Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06792 Davidia involucrata HOM05D000103 ORTHO05D185031 2.9e-61 238.4 123 100.0
Dinv20805 Davidia involucrata HOM05D000103 ORTHO05D000049 2.2e-13 79.3 56 71.4
Rhsim09G0143800 Rhododendron simsii HOM05D000103 ORTHO05D000049 4.2e-12 75.1 56 64.3
Actinidia34711 Actinidia chinensis HOM05D000103 ORTHO05D000049 9.4e-12 73.9 55 63.6
vmacro10282 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 9.4e-12 73.9 56 66.1
Oeu060255.1 Olea europaea HOM05D000103 ORTHO05D000049 2.1e-11 72.8 56 60.7
SGA_v2.0_scaffold13G06495 Striga asiatica HOM05D000103 ORTHO05D000049 2.1e-11 72.8 56 60.7
vmacro10292 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 2.1e-11 72.8 56 64.3
CSS0009588 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 7.9e-11 70.9 55 60.0
CSS0031134 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 7.9e-11 70.9 55 60.0
PGSC0003DMG400023490 Solanum tuberosum HOM05D000103 ORTHO05D000049 1.4e-10 70.1 55 60.0
SGA_v2.0_scaffold13G06496 Striga asiatica HOM05D000103 ORTHO05D000049 1.4e-10 70.1 56 58.9
Lj2C29G18 Lonicera japonica HOM05D000103 ORTHO05D000049 2.3e-10 69.3 55 58.2
CAN.G1550.8 Capsicum annuum HOM05D000103 ORTHO05D000049 3.0e-10 68.9 55 56.4
vmacro07386 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 3.0e-10 68.9 56 57.1
Cfa016564 Carpinus fangiana HOM05D000103 ORTHO05D000049 3.9e-10 68.6 56 60.7
vmacro07385 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 3.9e-10 68.6 56 58.9
TAR633G2791 Trochodendron aralioides HOM05D000103 ORTHO05D000049 5.1e-10 68.2 56 58.9
Oeu026569.1 Olea europaea HOM05D000103 ORTHO05D000049 6.7e-10 67.8 55 58.2
Rhsim03G0078700 Rhododendron simsii HOM05D000103 ORTHO05D000049 6.7e-10 67.8 56 57.1
Actinidia05447 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.1e-09 67.0 56 57.1
MSTRG.27526 Avicennia marina HOM05D000103 ORTHO05D000049 2.0e-09 66.2 55 58.2
CAN.G1550.9 Capsicum annuum HOM05D000103 ORTHO05D000049 2.0e-09 66.2 55 56.4
Peaxi162Scf00004g00041 Petunia axillaris HOM05D000103 ORTHO05D000049 2.0e-09 66.2 55 58.2
QL04p043094 Quercus lobata HOM05D000103 ORTHO05D000049 2.0e-09 66.2 56 55.4
vmacro08829 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 2.0e-09 66.2 56 57.1
Actinidia10393 Actinidia chinensis HOM05D000103 ORTHO05D000049 2.6e-09 65.9 55 52.7
Cpa.g.sc19.9 Carica papaya HOM05D000103 ORTHO05D000049 2.6e-09 65.9 56 55.4
CiPaw.10G006800 Carya illinoinensis HOM05D000103 ORTHO05D000049 2.6e-09 65.9 57 61.4
DCAR_019012 Daucus carota HOM05D000103 ORTHO05D000049 2.6e-09 65.9 56 57.1
Solyc05g055330.3 Solanum lycopersicum HOM05D000103 ORTHO05D000049 2.6e-09 65.9 55 58.2
Sopen05g033770 Solanum pennellii HOM05D000103 ORTHO05D000049 2.6e-09 65.9 55 58.2
TAR626G1590 Trochodendron aralioides HOM05D000103 ORTHO05D000049 2.6e-09 65.9 56 55.4
MSTRG.9107 Avicennia marina HOM05D000103 ORTHO05D000049 3.3e-09 65.5 56 57.1
Manes.09G058632 Manihot esculenta HOM05D000103 ORTHO05D000049 5.7e-09 64.7 55 54.5
Cpa.g.sc19.11 Carica papaya HOM05D000103 ORTHO05D000049 7.4e-09 64.3 56 53.6
Migut.F00897 Erythranthe guttata HOM05D000103 ORTHO05D000049 7.4e-09 64.3 57 54.4
Manes.09G058588 Manihot esculenta HOM05D000103 ORTHO05D000049 7.4e-09 64.3 55 56.4
Actinidia08426 Actinidia chinensis HOM05D000103 ORTHO05D000049 9.7e-09 63.9 56 55.4
Cc02_g09950 Coffea canephora HOM05D000103 ORTHO05D000049 9.7e-09 63.9 56 55.4
CSS0016744 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 1.3e-08 63.5 55 60.0
Haze_02584 Corylus avellana HOM05D000103 ORTHO05D000049 1.3e-08 63.5 54 53.7
Nitab4.5_0000962g0100 Nicotiana tabacum HOM05D000103 ORTHO05D000049 1.3e-08 63.5 55 60.0
Nitab4.5_0005390g0020 Nicotiana tabacum HOM05D000103 ORTHO05D000049 1.3e-08 63.5 55 60.0
SalBow6G0711 Salvia bowleyana HOM05D000103 ORTHO05D000049 1.3e-08 63.5 55 52.7
Migut.F01640 Erythranthe guttata HOM05D000103 ORTHO05D000049 1.7e-08 63.2 56 53.6
HanXRQChr12g0368161 Helianthus annuus HOM05D000103 ORTHO05D000049 1.7e-08 63.2 55 47.3
TAR633G0417 Trochodendron aralioides HOM05D000103 ORTHO05D000049 1.7e-08 63.2 56 53.6
GSVIVG01034745001 Vitis vinifera HOM05D000103 ORTHO05D000049 1.7e-08 63.2 56 55.4
Lj3C930T8 Lonicera japonica HOM05D000103 ORTHO05D000049 2.2e-08 62.8 55 49.1
Peaxi162Scf00244g01216 Petunia axillaris HOM05D000103 ORTHO05D000049 2.2e-08 62.8 55 58.2
Rhsim02G0208600 Rhododendron simsii HOM05D000103 ORTHO05D000049 2.2e-08 62.8 54 50.0
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 2.8e-08 62.4 56 58.9
Eucgr.A01530 Eucalyptus grandis HOM05D000103 ORTHO05D000049 2.8e-08 62.4 56 57.1
QL04p043050 Quercus lobata HOM05D000103 ORTHO05D000049 2.8e-08 62.4 56 53.6
QL04p043127 Quercus lobata HOM05D000103 ORTHO05D000049 2.8e-08 62.4 56 53.6
Medtr1g492950 Medicago truncatula HOM05D000103 ORTHO05D000049 3.7e-08 62.0 55 54.5
Nn6g35005 Nelumbo nucifera HOM05D000103 ORTHO05D000049 3.7e-08 62.0 56 51.8
Solyc11g007290.1 Solanum lycopersicum HOM05D000103 ORTHO05D000049 3.7e-08 62.0 55 56.4
GSVIVG01034741001 Vitis vinifera HOM05D000103 ORTHO05D000049 3.7e-08 62.0 56 55.4
Cpa.g.sc19.8 Carica papaya HOM05D000103 ORTHO05D000049 4.8e-08 61.6 55 50.9
Cfa002177 Carpinus fangiana HOM05D000103 ORTHO05D000049 4.8e-08 61.6 55 54.5
Ciclev10033294m.g Citrus clementina HOM05D000103 ORTHO05D000049 4.8e-08 61.6 56 57.1
ECA232G3756 Erigeron canadensis HOM05D000103 ORTHO05D000049 4.8e-08 61.6 56 51.8
MD02G1254900 Malus domestica HOM05D000103 ORTHO05D000049 4.8e-08 61.6 56 55.4
Peaxi162Scf00004g00036 Petunia axillaris HOM05D000103 ORTHO05D000049 4.8e-08 61.6 54 50.0
Rhsim04G0134100 Rhododendron simsii HOM05D000103 ORTHO05D000049 4.8e-08 61.6 54 50.0
PGSC0003DMG400019476 Solanum tuberosum HOM05D000103 ORTHO05D000049 4.8e-08 61.6 55 58.2
TWI38G0686 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 4.8e-08 61.6 56 55.4
Cfa011245 Carpinus fangiana HOM05D000103 ORTHO05D000049 6.3e-08 61.2 55 50.9
CiPaw.09G010000 Carya illinoinensis HOM05D000103 ORTHO05D000049 6.3e-08 61.2 56 55.4
Cc02_g09960 Coffea canephora HOM05D000103 ORTHO05D000049 6.3e-08 61.2 56 48.2
Hma1.2p1_0084F.1_g043410 Hydrangea macrophylla HOM05D000103 ORTHO05D000049 6.3e-08 61.2 56 51.8
Nn2g14053 Nelumbo nucifera HOM05D000103 ORTHO05D000049 6.3e-08 61.2 56 50.0
Psat6g176960 Pisum sativum HOM05D000103 ORTHO05D000049 6.3e-08 61.2 54 53.7
Sopen11g003180 Solanum pennellii HOM05D000103 ORTHO05D000049 6.3e-08 61.2 55 56.4
Lsat_1_v5_gn_0_7421 Lactuca sativa HOM05D000103 ORTHO05D000049 8.2e-08 60.8 56 50.0
Oeu059861.1 Olea europaea HOM05D000103 ORTHO05D000049 8.2e-08 60.8 55 52.7
Potri.006G115000 Populus trichocarpa HOM05D000103 ORTHO05D000049 1.1e-07 60.5 57 52.6
PGSC0003DMG400019477 Solanum tuberosum HOM05D000103 ORTHO05D000049 1.1e-07 60.5 55 56.4
TAR636G0453 Trochodendron aralioides HOM05D000103 ORTHO05D000049 1.1e-07 60.5 55 47.3
unitig_750.g28440 Utricularia gibba HOM05D000103 ORTHO05D000049 1.1e-07 60.5 54 48.1
vmacro08827 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 1.1e-07 60.5 55 49.1
Cfa020758 Carpinus fangiana HOM05D000103 ORTHO05D000049 1.4e-07 60.1 56 58.9
Eucgr.G02707 Eucalyptus grandis HOM05D000103 ORTHO05D000049 1.4e-07 60.1 56 58.9
Lj3C930T9 Lonicera japonica HOM05D000103 ORTHO05D000049 1.4e-07 60.1 55 47.3
PGR142G1460 Punica granatum HOM05D000103 ORTHO05D000049 1.4e-07 60.1 55 54.5
TPR.G2538 Trifolium pratense HOM05D000103 ORTHO05D000049 1.4e-07 60.1 55 54.5
unitig_26.g8830 Utricularia gibba HOM05D000103 ORTHO05D000049 1.4e-07 60.1 54 50.0
GSVIVG01033804001 Vitis vinifera HOM05D000103 ORTHO05D000049 1.4e-07 60.1 54 50.0
GSVIVG01034748001 Vitis vinifera HOM05D000103 ORTHO05D000049 1.4e-07 60.1 56 53.6
EL10Ac7g16965 Beta vulgaris HOM05D000103 ORTHO05D000049 1.8e-07 59.7 53 52.8
Potri.009G147100 Populus trichocarpa HOM05D000103 ORTHO05D000049 1.8e-07 59.7 55 47.3
QL07p039925 Quercus lobata HOM05D000103 ORTHO05D000049 1.8e-07 59.7 56 55.4
Thecc.06G052400 Theobroma cacao HOM05D000103 ORTHO05D000049 1.8e-07 59.7 55 52.7
GSVIVG01034746001 Vitis vinifera HOM05D000103 ORTHO05D000049 1.8e-07 59.7 56 55.4
CSS0001133 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 2.4e-07 59.3 56 53.6
FAN05G3663 Fragaria x ananassa HOM05D000103 ORTHO05D000049 2.4e-07 59.3 56 53.6
FAN05G5465 Fragaria x ananassa HOM05D000103 ORTHO05D000049 2.4e-07 59.3 56 53.6
FAN09G4677 Fragaria x ananassa HOM05D000103 ORTHO05D000049 2.4e-07 59.3 56 53.6
Hma1.2p1_0084F.1_g043260 Hydrangea macrophylla HOM05D000103 ORTHO05D000049 2.4e-07 59.3 56 51.8
MD12G1020800 Malus domestica HOM05D000103 ORTHO05D000049 2.4e-07 59.3 56 55.4
Solyc11g007280.3 Solanum lycopersicum HOM05D000103 ORTHO05D000049 2.4e-07 59.3 55 56.4
Sopen11g003170 Solanum pennellii HOM05D000103 ORTHO05D000049 2.4e-07 59.3 55 56.4
Thecc.05G084300 Theobroma cacao HOM05D000103 ORTHO05D000049 2.4e-07 59.3 55 49.1
CAN.G534.9 Capsicum annuum HOM05D000103 ORTHO05D000049 3.1e-07 58.9 55 54.5
FvH4_6g18150 Fragaria vesca HOM05D000103 ORTHO05D000049 3.1e-07 58.9 56 53.6
FAN02G2199 Fragaria x ananassa HOM05D000103 ORTHO05D000049 3.1e-07 58.9 56 53.6
FAN14G2407 Fragaria x ananassa HOM05D000103 ORTHO05D000049 3.1e-07 58.9 56 53.6
Gohir.D04G019800 Gossypium hirsutum HOM05D000103 ORTHO05D000049 3.1e-07 58.9 56 57.1
Gorai.012G023600 Gossypium raimondii HOM05D000103 ORTHO05D000049 3.1e-07 58.9 56 57.1
HanXRQChr11g0321251 Helianthus annuus HOM05D000103 ORTHO05D000049 3.1e-07 58.9 56 48.2
Prupe.6G121200 Prunus persica HOM05D000103 ORTHO05D000049 3.1e-07 58.9 56 51.8
Rhsim02G0208400 Rhododendron simsii HOM05D000103 ORTHO05D000049 3.1e-07 58.9 55 50.9
arahy.Tifrunner.gnm1.ann1.IIQV7F Arachis hypogaea HOM05D000103 ORTHO05D000049 4.1e-07 58.5 56 51.8
arahy.Tifrunner.gnm1.ann1.XN7CAS Arachis hypogaea HOM05D000103 ORTHO05D000049 4.1e-07 58.5 56 51.8
CSS0036685 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 4.1e-07 58.5 56 53.6
COL.COLO4_20101 Corchorus olitorius HOM05D000103 ORTHO05D000049 4.1e-07 58.5 56 57.1
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 4.1e-07 58.5 55 45.5
Peaxi162Scf00244g01215 Petunia axillaris HOM05D000103 ORTHO05D000049 4.1e-07 58.5 55 50.9
QL07p039944 Quercus lobata HOM05D000103 ORTHO05D000049 4.1e-07 58.5 55 50.9
Sabra06G0089900 Salix brachista HOM05D000103 ORTHO05D000049 4.1e-07 58.5 56 48.2
Thecc.10G103900 Theobroma cacao HOM05D000103 ORTHO05D000049 4.1e-07 58.5 55 54.5
Actinidia37092 Actinidia chinensis HOM05D000103 ORTHO05D000049 5.3e-07 58.2 56 48.2
arahy.Tifrunner.gnm1.ann1.964VMB Arachis hypogaea HOM05D000103 ORTHO05D000049 5.3e-07 58.2 55 50.9
arahy.Tifrunner.gnm1.ann1.LND7SA Arachis hypogaea HOM05D000103 ORTHO05D000049 5.3e-07 58.2 55 50.9
ECA238G0934 Erigeron canadensis HOM05D000103 ORTHO05D000049 5.3e-07 58.2 55 47.3
HanXRQChr08g0217851 Helianthus annuus HOM05D000103 ORTHO05D000049 5.3e-07 58.2 54 46.3
PGR142G0194 Punica granatum HOM05D000103 ORTHO05D000049 5.3e-07 58.2 55 52.7
Duzib106G0914 Durio zibethinus HOM05D000103 ORTHO05D000049 7.0e-07 57.8 55 47.3
Manes.10G057300 Manihot esculenta HOM05D000103 ORTHO05D000049 9.1e-07 57.4 55 49.1
Actinidia18584 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.2e-06 57.0 56 51.8
CSS0014614 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 1.2e-06 57.0 56 53.6
Eucgr.K02065 Eucalyptus grandis HOM05D000103 ORTHO05D000049 1.2e-06 57.0 55 56.4
TWI15G0425 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 1.2e-06 57.0 56 51.8
Eucgr.J00449 Eucalyptus grandis HOM05D000103 ORTHO05D000049 1.5e-06 56.6 56 51.8
MD14G1018100 Malus domestica HOM05D000103 ORTHO05D000049 1.5e-06 56.6 56 50.0
Medtr7g104100 Medicago truncatula HOM05D000103 ORTHO05D000049 1.5e-06 56.6 56 46.4
TPR.G19530 Trifolium pratense HOM05D000103 ORTHO05D000049 1.5e-06 56.6 56 51.8
TAR623G0536 Trochodendron aralioides HOM05D000103 ORTHO05D000049 1.5e-06 56.6 56 48.2
PGR119G0243 Punica granatum HOM05D000103 ORTHO05D000049 2.0e-06 56.2 55 43.6
Gohir.A05G395200 Gossypium hirsutum HOM05D000103 ORTHO05D000049 2.6e-06 55.8 56 55.4
MD11G1159000 Malus domestica HOM05D000103 ORTHO05D000049 2.6e-06 55.8 56 50.0
MD14G1017900 Malus domestica HOM05D000103 ORTHO05D000049 2.6e-06 55.8 56 50.0
Medtr1g050525 Medicago truncatula HOM05D000103 ORTHO05D000049 2.6e-06 55.8 55 52.7
RcHm_v2.0_Chr3g0472451 Rosa chinensis HOM05D000103 ORTHO05D000049 2.6e-06 55.8 56 51.8
TPR.G22710 Trifolium pratense HOM05D000103 ORTHO05D000049 2.6e-06 55.8 55 52.7
Ca_25042_v3 Cicer arietinum L. HOM05D000103 ORTHO05D000049 3.4e-06 55.5 55 50.9
Glyma.19G192900 Glycine max HOM05D000103 ORTHO05D000049 3.4e-06 55.5 56 48.2
Gohir.D09G136900 Gossypium hirsutum HOM05D000103 ORTHO05D000049 3.4e-06 55.5 55 45.5
Gorai.006G157100 Gossypium raimondii HOM05D000103 ORTHO05D000049 3.4e-06 55.5 55 45.5
Lsat_1_v5_gn_8_24501 Lactuca sativa HOM05D000103 ORTHO05D000049 3.4e-06 55.5 54 42.6
Lalb_Chr02g0151441 Lupinus albus HOM05D000103 ORTHO05D000049 3.4e-06 55.5 56 48.2
PGR119G0083 Punica granatum HOM05D000103 ORTHO05D000049 3.4e-06 55.5 56 50.0
VMungo0720G0204 Vigna mungo HOM05D000103 ORTHO05D000049 4.5e-06 55.1 55 49.1
Gorai.009G304900 Gossypium raimondii HOM05D000103 ORTHO05D000049 5.9e-06 54.7 56 57.1
Lj5g0025113 Lotus japonicus HOM05D000103 ORTHO05D000049 5.9e-06 54.7 55 50.9
MD12G1020900 Malus domestica HOM05D000103 ORTHO05D000001 5.9e-06 54.7 56 50.0
Medtr7g104130 Medicago truncatula HOM05D000103 ORTHO05D000049 5.9e-06 54.7 56 50.0
Sc02g0001060 Simmondsia chinensis HOM05D000103 ORTHO05D000049 5.9e-06 54.7 57 49.1
PGSC0003DMG400019478 Solanum tuberosum HOM05D000103 ORTHO05D000049 5.9e-06 54.7 59 49.2
COL.COLO4_29790 Corchorus olitorius HOM05D000103 ORTHO05D000049 7.7e-06 54.3 55 49.1
Medtr7g104150 Medicago truncatula HOM05D000103 ORTHO05D000049 7.7e-06 54.3 56 44.6
Oeu052892.1 Olea europaea HOM05D000103 ORTHO05D000049 7.7e-06 54.3 55 50.9
Phvul.007G247200 Phaseolus vulgaris HOM05D000103 ORTHO05D000049 7.7e-06 54.3 55 49.1
PGR142G3037 Punica granatum HOM05D000103 ORTHO05D000049 7.7e-06 54.3 57 54.4


User provided reference genes

Program Settings