Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06767 Davidia involucrata HOM05D003544 ORTHO05D003830 5.4e-102 374.4 198 100.0
QL08p060246 Quercus lobata HOM05D003544 ORTHO05D003830 9.9e-88 327.0 192 88.0
QL08p060482 Quercus lobata HOM05D003544 ORTHO05D003830 9.9e-88 327.0 192 88.0
Phvul.001G233500 Phaseolus vulgaris HOM05D003544 ORTHO05D003830 1.7e-87 326.2 192 88.0
MD07G1201500 Malus domestica HOM05D003544 ORTHO05D003830 3.8e-87 325.1 192 88.5
FvH4_7g22830 Fragaria vesca HOM05D003544 ORTHO05D003830 6.4e-87 324.3 192 87.5
FAN01G0392 Fragaria x ananassa HOM05D000150 ORTHO05D003830 6.4e-87 324.3 192 87.5
FAN01G0956 Fragaria x ananassa HOM05D000150 ORTHO05D003830 6.4e-87 324.3 192 87.5
FAN03G2315 Fragaria x ananassa HOM05D003544 ORTHO05D003830 6.4e-87 324.3 192 87.5
FAN06G0546 Fragaria x ananassa HOM05D003544 ORTHO05D003830 6.4e-87 324.3 192 87.5
COL.COLO4_15089 Corchorus olitorius HOM05D003544 ORTHO05D003830 8.4e-87 323.9 192 87.0
CSS0004294 Camellia sinensis var. sinensis HOM05D003544 ORTHO05D003830 1.1e-86 323.6 192 88.0
Glyma.18G037200 Glycine max HOM05D003544 ORTHO05D003830 1.1e-86 323.6 192 87.0
CiPaw.01G289700 Carya illinoinensis HOM05D003544 ORTHO05D003830 1.4e-86 323.2 191 86.9
FAN10G3533 Fragaria x ananassa HOM05D003544 ORTHO05D003830 1.4e-86 323.2 192 87.0
RcHm_v2.0_Chr1g0367981 Rosa chinensis HOM05D003544 ORTHO05D003830 1.9e-86 322.8 192 87.5
Potri.010G201500 Populus trichocarpa HOM05D003544 ORTHO05D003830 2.4e-86 322.4 192 86.5
Prupe.2G238100 Prunus persica HOM05D003544 ORTHO05D003830 2.4e-86 322.4 192 87.5
TAR623G1685 Trochodendron aralioides HOM05D003544 ORTHO05D003830 4.2e-86 321.6 191 86.4
MD01G1136500 Malus domestica HOM05D003544 ORTHO05D003830 5.4e-86 321.2 192 87.0
Glyma.11G220200 Glycine max HOM05D003544 ORTHO05D003830 1.2e-85 320.1 192 85.9
SGA_v2.0_scaffold221G42690 Striga asiatica HOM05D003544 ORTHO05D003830 1.2e-85 320.1 192 86.5
Duzib114G0911 Durio zibethinus HOM05D003544 ORTHO05D003830 1.6e-85 319.7 192 86.5
Lj8A82T51 Lonicera japonica HOM05D003544 ORTHO05D003830 2.1e-85 319.3 192 88.0
Lj6g0009635 Lotus japonicus HOM05D003544 ORTHO05D003830 2.7e-85 318.9 192 85.9
Medtr3g067995 Medicago truncatula HOM05D003544 ORTHO05D003830 3.5e-85 318.5 192 85.9
Thecc.10G037000 Theobroma cacao HOM05D003544 ORTHO05D003830 4.6e-85 318.2 192 87.0
Atru.chr12.416 Acer truncatum HOM05D003544 ORTHO05D003830 7.8e-85 317.4 192 85.9
PSO339G1680 Papaver somniferum HOM05D003544 ORTHO05D003830 1.0e-84 317.0 192 85.4
vmacro10222 Vaccinium macrocarpon HOM05D003544 ORTHO05D003830 1.0e-84 317.0 192 86.5
Migut.F01531 Erythranthe guttata HOM05D003544 ORTHO05D003830 1.7e-84 316.2 195 83.6
Nitab4.5_0006365g0020 Nicotiana tabacum HOM05D003544 ORTHO05D003830 2.3e-84 315.8 192 84.9
PSO063G3772 Papaver somniferum HOM05D003544 ORTHO05D003830 2.3e-84 315.8 192 84.9
Nitab4.5_0000647g0150 Nicotiana tabacum HOM05D003544 ORTHO05D003830 3.0e-84 315.5 192 84.9
Peaxi162Scf00164g01220 Petunia axillaris HOM05D003544 ORTHO05D003830 3.0e-84 315.5 192 84.9
Cpa.g.sc1.429 Carica papaya HOM05D003544 ORTHO05D003830 3.9e-84 315.1 183 88.5
Manes.07G118000 Manihot esculenta HOM05D003544 ORTHO05D003830 5.1e-84 314.7 192 85.4
VMungo1383G2117 Vigna mungo HOM05D003544 ORTHO05D003830 8.7e-84 313.9 180 88.9
Cc02_g07580 Coffea canephora HOM05D003544 ORTHO05D003830 1.1e-83 313.5 184 87.0
COL.COLO4_18562 Corchorus olitorius HOM05D003544 ORTHO05D003830 2.5e-83 312.4 189 85.7
SGA_v2.0_scaffold2G01024 Striga asiatica HOM05D003544 ORTHO05D003830 4.3e-83 311.6 192 85.4
GSVIVG01016511001 Vitis vinifera HOM05D003544 ORTHO05D003830 4.3e-83 311.6 178 89.3
HanXRQChr10g0312851 Helianthus annuus HOM05D003544 ORTHO05D003830 7.3e-83 310.8 192 82.3
Gohir.D03G122700 Gossypium hirsutum HOM05D003544 ORTHO05D003830 9.6e-83 310.5 190 85.3
TWI15G1030 Tripterygium wilfordii HOM05D003544 ORTHO05D003830 9.6e-83 310.5 193 85.0
Duzib106G1967 Durio zibethinus HOM05D003544 ORTHO05D003830 1.3e-82 310.1 188 84.6
Sc10g0001720 Simmondsia chinensis HOM05D003544 ORTHO05D003830 1.3e-82 310.1 194 83.5
THA.LOC104810038 Tarenaya hassleriana HOM05D003544 ORTHO05D003830 1.3e-82 310.1 196 82.1
MSTRG.8261 Avicennia marina HOM05D003544 ORTHO05D003830 1.6e-82 309.7 192 84.4
CANSAT56G1342 Cannabis sativa HOM05D003544 ORTHO05D003830 1.6e-82 309.7 194 84.0
Duzib168G0263 Durio zibethinus HOM05D003544 ORTHO05D003830 1.6e-82 309.7 191 84.8
Gorai.003G129400 Gossypium raimondii HOM05D003544 ORTHO05D003830 1.6e-82 309.7 190 84.2
Sopen05g031560 Solanum pennellii HOM05D003544 ORTHO05D003830 2.1e-82 309.3 192 82.8
Ca_08172_v3 Cicer arietinum L. HOM05D003544 ORTHO05D003830 2.8e-82 308.9 195 82.6
Cfa001450 Carpinus fangiana HOM05D003544 ORTHO05D003830 4.8e-82 308.1 176 88.6
Psat5g123600 Pisum sativum HOM05D003544 ORTHO05D003830 6.2e-82 307.8 192 83.9
Thecc.09G317500 Theobroma cacao HOM05D003544 ORTHO05D003830 6.2e-82 307.8 192 83.9
Thhalv10010626m.g Eutrema salsugineum HOM05D003544 ORTHO05D003830 8.1e-82 307.4 192 83.3
CsaV3_6G001260 Cucumis sativus L. HOM05D003544 ORTHO05D003830 1.1e-81 307.0 193 84.5
Gohir.A03G044500 Gossypium hirsutum HOM05D003544 ORTHO05D003830 1.8e-81 306.2 190 83.7
ClCG11G006780 Citrullus lanatus HOM05D003544 ORTHO05D003830 2.4e-81 305.8 193 84.5
Hma1.2p1_1480F.1_g286053 Hydrangea macrophylla HOM05D003544 ORTHO05D003830 4.0e-81 305.1 178 86.5
Ciclev10032379m.g Citrus clementina HOM05D003544 ORTHO05D003830 5.3e-81 304.7 192 83.3
Solyc05g053040.3 Solanum lycopersicum HOM05D003544 ORTHO05D003830 5.3e-81 304.7 193 82.4
arahy.Tifrunner.gnm1.ann1.2U9KWS Arachis hypogaea HOM05D003544 ORTHO05D003830 6.9e-81 304.3 219 76.3
arahy.Tifrunner.gnm1.ann1.95BPNM Arachis hypogaea HOM05D003544 ORTHO05D003830 6.9e-81 304.3 219 76.3
Aqoxy1G00897 Aquilegia oxysepala HOM05D003544 ORTHO05D003830 9.0e-81 303.9 192 82.3
GSVIVG01024921001 Vitis vinifera HOM05D003544 ORTHO05D003830 1.2e-80 303.5 193 83.9
A09p48540 Brassica napus HOM05D003544 ORTHO05D003830 2.0e-80 302.8 192 82.3
BolC8t50710H Brassica oleracea HOM05D003544 ORTHO05D003830 2.0e-80 302.8 192 82.3
Manes.01G170400 Manihot esculenta HOM05D003544 ORTHO05D003830 2.6e-80 302.4 194 82.0
Duzib170G0696 Durio zibethinus HOM05D003544 ORTHO05D003830 3.4e-80 302.0 190 82.6
Atru.chr3.3967 Acer truncatum HOM05D003544 ORTHO05D003830 4.4e-80 301.6 192 81.2
ECA232G4890 Erigeron canadensis HOM05D003544 ORTHO05D003830 4.4e-80 301.6 197 81.7
CANSAT54G2540 Cannabis sativa HOM05D003544 ORTHO05D003830 5.8e-80 301.2 191 80.6
Lsat_1_v5_gn_2_118280 Lactuca sativa HOM05D003544 ORTHO05D003830 7.6e-80 300.8 195 80.5
Sed0003735 Sechium edule HOM05D003544 ORTHO05D003830 7.6e-80 300.8 193 82.9
Haze_17091 Corylus avellana HOM05D003544 ORTHO05D003830 1.3e-79 300.1 192 81.8
Gorai.013G263100 Gossypium raimondii HOM05D003544 ORTHO05D003830 1.3e-79 300.1 189 83.1
Eucgr.G02946 Eucalyptus grandis HOM05D003544 ORTHO05D003830 1.7e-79 299.7 192 80.7
BcaC07g39879 Brassica carinata HOM05D003544 ORTHO05D003830 2.9e-79 298.9 191 81.7
C08p30840 Brassica napus HOM05D003544 ORTHO05D003830 2.9e-79 298.9 191 81.7
MSTRG.276 Avicennia marina HOM05D003544 ORTHO05D003830 3.8e-79 298.5 192 83.9
BcaB01g00085 Brassica carinata HOM05D003544 ORTHO05D003830 3.8e-79 298.5 192 81.2
Sp5g06950 Schrenkiella parvula HOM05D003544 ORTHO05D003830 3.8e-79 298.5 192 81.8
Dinv34268 Davidia involucrata HOM05D003544 ORTHO05D003830 4.9e-79 298.1 198 81.3
MD11G1096300 Malus domestica HOM05D003544 ORTHO05D003830 4.9e-79 298.1 191 80.1
Gohir.A13G227000 Gossypium hirsutum HOM05D003544 ORTHO05D003830 6.4e-79 297.7 189 83.1
Prupe.6G071900 Prunus persica HOM05D003544 ORTHO05D003830 6.4e-79 297.7 191 80.1
AL5G36700 Arabidopsis lyrata HOM05D003544 ORTHO05D003830 1.1e-78 297.0 192 81.2
EL10Ac2g04722 Beta vulgaris HOM05D003544 ORTHO05D003830 1.1e-78 297.0 192 82.3
Gohir.D13G232300 Gossypium hirsutum HOM05D003544 ORTHO05D003830 1.1e-78 297.0 189 82.5
Lalb_Chr15g0084651 Lupinus albus HOM05D003544 ORTHO05D003830 1.4e-78 296.6 192 82.3
Sed0018949 Sechium edule HOM05D003544 ORTHO05D003830 1.4e-78 296.6 193 82.4
Cfa011530 Carpinus fangiana HOM05D003544 ORTHO05D003830 1.9e-78 296.2 186 81.2
vmacro03041 Vaccinium macrocarpon HOM05D003544 ORTHO05D003830 1.9e-78 296.2 191 80.1
Hund16071 Selenicereus undatus HOM05D003544 ORTHO05D003830 7.1e-78 294.3 189 82.0
PGR142G2124 Punica granatum HOM05D003544 ORTHO05D003830 9.3e-78 293.9 192 79.7
MBI05_g29687_MAGBIO Magnolia biondii HOM05D003544 ORTHO05D003830 1.6e-77 293.1 208 78.4
Potri.009G034700 Populus trichocarpa HOM05D003544 ORTHO05D003830 1.6e-77 293.1 190 80.5
PGR119G0781 Punica granatum HOM05D003544 ORTHO05D003830 1.6e-77 293.1 195 79.0
Cpa.g.sc81.110 Carica papaya HOM05D003544 ORTHO05D003830 2.1e-77 292.7 191 78.0
AUR62040717 Chenopodium quinoa HOM05D003544 ORTHO05D003830 4.6e-77 291.6 192 80.2
Ciclev10030412m.g Citrus clementina HOM05D003544 ORTHO05D003830 4.6e-77 291.6 192 79.7
AUR62012119 Chenopodium quinoa HOM05D003544 ORTHO05D003830 6.0e-77 291.2 192 80.2
Nn2g11170 Nelumbo nucifera HOM05D003544 ORTHO05D003830 7.9e-77 290.8 175 85.1
AT3G55530 Arabidopsis thaliana HOM05D003544 ORTHO05D003830 1.0e-76 290.4 193 80.8
Carub.0005s2226 Capsella rubella HOM05D003544 ORTHO05D003830 1.3e-76 290.0 192 80.7
ATR0559G280 Amborella trichopoda HOM05D003544 ORTHO05D003830 1.7e-76 289.7 197 79.7
Oeu017652.1 Olea europaea HOM05D003544 ORTHO05D003830 2.3e-76 289.3 176 85.8
QL01p030710 Quercus lobata HOM05D003544 ORTHO05D003830 3.0e-76 288.9 189 79.4
Rhsim09G0167200 Rhododendron simsii HOM05D003544 ORTHO05D003830 3.0e-76 288.9 227 71.8
CARHR165590 Cardamine hirsuta HOM05D003544 ORTHO05D003830 1.1e-75 287.0 193 80.3
CSS0032889 Camellia sinensis var. sinensis HOM05D003544 ORTHO05D003830 1.9e-75 286.2 190 77.9
Hma1.2p1_0757F.1_g213320 Hydrangea macrophylla HOM05D003544 ORTHO05D003830 3.3e-75 285.4 203 75.4
Gorai.011G266800 Gossypium raimondii HOM05D003544 ORTHO05D003830 7.3e-75 284.3 192 77.6
Haze_24135 Corylus avellana HOM05D003544 ORTHO05D003830 9.6e-75 283.9 208 72.6
Gohir.A10G221000 Gossypium hirsutum HOM05D003544 ORTHO05D003830 1.3e-74 283.5 192 77.1
TWI31G1295 Tripterygium wilfordii HOM05D003544 ORTHO05D003830 2.1e-74 282.7 189 78.3
Gohir.D10G233200 Gossypium hirsutum HOM05D003544 ORTHO05D003830 2.8e-74 282.3 192 77.1
Actinidia08535 Actinidia chinensis HOM05D003544 ORTHO05D003830 8.1e-74 280.8 198 77.3
Rhsim13G0078200 Rhododendron simsii HOM05D000082 ORTHO05D003830 1.1e-73 280.4 182 79.1
SHI22634 Sapria himalayana HOM05D003544 ORTHO05D003830 1.8e-73 279.6 192 76.0
unitig_0.g1019 Utricularia gibba HOM05D003544 ORTHO05D003830 1.2e-72 276.9 192 77.6
TPR.G15819 Trifolium pratense HOM05D003544 ORTHO05D003830 2.0e-72 276.2 197 75.6
Ah.15g098530 Amaranthus hybridus HOM05D003544 ORTHO05D003830 2.6e-72 275.8 192 75.5
AUR62001751 Chenopodium quinoa HOM05D003544 ORTHO05D003830 4.5e-72 275.0 194 74.2
EL10Ac7g16053 Beta vulgaris HOM05D003544 ORTHO05D003830 7.6e-72 274.2 192 74.5
Aa31LG10G10560 Aethionema arabicum HOM05D003544 ORTHO05D003830 1.3e-71 273.5 208 73.1
Phvul.011G062500 Phaseolus vulgaris HOM05D003544 ORTHO05D003830 6.4e-71 271.2 193 72.5
Os03g0272300 Oryza sativa ssp. japonica HOM05D003544 ORTHO05D003830 1.1e-70 270.4 197 74.6
Ah.16g102480 Amaranthus hybridus HOM05D003544 ORTHO05D003392 1.9e-70 269.6 197 75.6
AUR62020020 Chenopodium quinoa HOM05D002577 ORTHO05D003830 2.4e-70 269.2 190 74.2
CiPaw.13G090700 Carya illinoinensis HOM05D003544 ORTHO05D003830 5.5e-70 268.1 190 76.8
Sabra09G0024700 Salix brachista HOM05D002577 ORTHO05D002883 9.3e-70 267.3 220 67.7
Lj1C940T8 Lonicera japonica HOM05D003544 ORTHO05D003830 1.2e-69 266.9 178 80.9
VMungo1127G1202 Vigna mungo HOM05D003544 ORTHO05D003830 1.6e-69 266.5 192 72.9
HPP92_006644 Vanilla planifolia HOM05D003544 ORTHO05D003830 3.5e-69 265.4 197 75.6
Glyma.11G137400 Glycine max HOM05D003544 ORTHO05D003830 1.0e-68 263.8 193 72.5
Lj1A148T52 Lonicera japonica HOM05D003544 ORTHO05D003830 2.3e-68 262.7 192 71.9
CDE02G1059 Ceratophyllum demersum HOM05D003544 ORTHO05D003830 3.0e-68 262.3 198 70.7
Ca_20624_v3 Cicer arietinum L. HOM05D003544 ORTHO05D003830 3.9e-68 261.9 193 69.4
Zm00001eb012200 Zea mays HOM05D003544 ORTHO05D003830 7.4e-67 257.7 199 71.4
PGSC0003DMG400027142 Solanum tuberosum HOM05D000478 ORTHO05D003830 2.1e-66 256.1 152 86.8
Psat7g210640 Pisum sativum HOM05D003544 ORTHO05D003830 1.4e-65 253.4 190 68.9
Hund04929 Selenicereus undatus HOM05D003544 ORTHO05D003830 2.4e-65 252.7 190 72.6
TPR.G23586 Trifolium pratense HOM05D003544 ORTHO05D003830 6.9e-65 251.1 192 67.2
Eucgr.J02038 Eucalyptus grandis HOM05D003544 ORTHO05D003830 1.2e-64 250.4 194 70.6
Lj3g0017508 Lotus japonicus HOM05D003544 ORTHO05D003830 1.2e-64 250.4 193 68.4
arahy.Tifrunner.gnm1.ann1.80FYU6 Arachis hypogaea HOM05D003544 ORTHO05D003830 1.3e-63 246.9 190 66.8
FAN06G3709 Fragaria x ananassa HOM05D003544 ORTHO05D003830 2.2e-63 246.1 192 71.9
Glyma.12G060800 Glycine max HOM05D003544 ORTHO05D003830 3.2e-62 242.3 221 62.0
Sabra10G0155500 Salix brachista HOM05D003544 ORTHO05D003830 9.3e-62 240.7 192 68.8
PSO339G2861 Papaver somniferum HOM05D003544 ORTHO05D003830 5.1e-60 235.0 187 67.9
Mapoly0020s0054 Marchantia polymorpha HOM05D003544 ORTHO05D003830 3.7e-58 228.8 196 65.8
MELO3C008223.2 Cucumis melo HOM05D003544 ORTHO05D003830 4.8e-58 228.4 143 84.6
Lalb_Chr24g0394051 Lupinus albus HOM05D003544 ORTHO05D003830 4.8e-58 228.4 189 64.0
Psat0ss2553g0040 Pisum sativum HOM05D003544 ORTHO05D003830 6.3e-58 228.0 177 70.1
arahy.Tifrunner.gnm1.ann1.1A4P42 Arachis hypogaea HOM05D003544 ORTHO05D003830 1.4e-57 226.9 228 56.1
SMO367G0986 Selaginella moellendorffii HOM05D003544 ORTHO05D003830 1.8e-57 226.5 192 63.0
PSO513G0026 Papaver somniferum HOM05D003544 ORTHO05D003830 5.9e-56 221.5 194 59.3
CDE08G0984 Ceratophyllum demersum HOM05D003544 ORTHO05D003830 2.1e-53 213.0 198 62.1
Medtr4g064560 Medicago truncatula HOM05D003544 ORTHO05D003830 3.0e-52 209.1 193 58.0
Pp3c15_2690 Physcomitrium patens HOM05D003544 ORTHO05D003830 1.1e-51 207.2 192 60.4
PSO339G1503 Papaver somniferum HOM05D003544 ORTHO05D003830 7.4e-51 204.5 195 59.0
Medtr4g064550 Medicago truncatula HOM05D003544 ORTHO05D003830 4.1e-49 198.7 199 55.3
Actinidia13886 Actinidia chinensis HOM05D003544 ORTHO05D003830 5.5e-46 188.3 114 86.0
PSO675G7116 Papaver somniferum HOM05D003544 ORTHO05D003830 9.4e-46 187.6 207 53.1
Zm00001eb397760 Zea mays HOM05D003544 ORTHO05D003830 1.1e-43 180.6 141 70.9
Ca_26141_v3 Cicer arietinum L. HOM05D001813 ORTHO05D003830 5.3e-41 171.8 107 86.0
Pp3c9_2330 Physcomitrium patens HOM05D003544 ORTHO05D003830 1.0e-39 167.5 201 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3221 Anthoceros agrestis HOM05D003544 ORTHO05D003830 2.9e-39 166.0 138 63.8
Duzib150G1491 Durio zibethinus HOM05D003544 ORTHO05D003830 3.6e-37 159.1 123 72.4
Actinidia26727 Actinidia chinensis HOM05D003544 ORTHO05D003830 6.7e-28 128.3 158 52.5
Actinidia36892 Actinidia chinensis HOM05D003544 ORTHO05D003830 5.0e-23 112.1 65 86.2
Actinidia12908 Actinidia chinensis HOM05D003544 ORTHO05D003830 3.2e-22 109.4 160 45.6
Peaxi162Scf00122g00048 Petunia axillaris HOM05D003544 ORTHO05D003830 4.5e-16 89.0 162 35.2
PGSC0003DMG400002152 Solanum tuberosum HOM05D003544 ORTHO05D003830 5.5e-14 82.0 155 37.4
DCAR_010129 Daucus carota HOM05D001994 ORTHO05D001954 6.1e-13 78.6 54 72.2
Nitab4.5_0000272g0040 Nicotiana tabacum HOM05D003544 ORTHO05D003830 2.3e-12 76.6 132 40.9
DCAR_018921 Daucus carota HOM05D003544 ORTHO05D003830 5.2e-12 75.5 190 32.1
Sc21g0005970 Simmondsia chinensis HOM05D003544 ORTHO05D003830 3.4e-11 72.8 124 43.5
Nitab4.5_0008249g0030 Nicotiana tabacum HOM05D003544 ORTHO05D003830 9.8e-11 71.2 106 40.6
arahy.Tifrunner.gnm1.ann1.J5AQBN Arachis hypogaea HOM05D003544 ORTHO05D003830 5.9e-08 62.0 53 60.4
arahy.Tifrunner.gnm1.ann1.JYY6TN Arachis hypogaea HOM05D003544 ORTHO05D003830 2.9e-07 59.7 53 58.5


User provided reference genes

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