Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 5.1e-265 917.1 455 100.0
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 8.2e-255 883.2 488 91.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 5.3e-254 880.6 489 91.4
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 5.3e-254 880.6 489 91.4
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 5.3e-254 880.6 489 91.4
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 9.1e-254 879.8 489 91.0
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.6e-250 869.0 489 90.8
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 2.1e-250 868.6 489 90.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.0e-250 866.7 489 90.6
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.0e-250 866.7 489 90.6
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.0e-250 866.7 489 90.6
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.0e-249 866.3 486 90.5
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-248 861.7 489 90.0
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 2.4e-246 855.1 488 90.0
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.3e-246 854.0 489 89.8
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.3e-246 854.0 489 89.8
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.2e-245 852.8 489 89.6
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 6.5e-244 847.0 489 89.2
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 4.7e-242 840.9 473 91.1
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.0e-240 835.5 458 92.8
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 9.8e-240 833.2 489 88.1
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 7.0e-238 827.0 489 87.5
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 7.0e-238 827.0 489 87.5
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 7.0e-238 827.0 489 87.5
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 7.0e-238 827.0 489 87.5
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 7.0e-238 827.0 489 87.5
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 1.6e-237 825.9 485 88.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.0e-237 825.5 435 95.9
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.5e-237 824.7 489 87.1
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 7.7e-237 823.5 418 98.1
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.3e-236 822.8 430 96.5
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 5.0e-236 820.8 485 87.4
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.7e-231 804.7 457 90.2
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 1.2e-229 799.7 488 85.0
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.3e-228 795.4 455 89.7
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 1.7e-223 779.2 488 83.6
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.7e-223 778.1 490 84.3
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 7.3e-219 763.8 488 81.8
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.9e-215 751.1 486 80.7
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-214 749.6 430 90.0
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 9.2e-214 746.9 479 81.6
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-212 741.5 475 81.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 7.1e-198 694.1 485 77.3
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.5e-195 686.4 423 84.2
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 9.6e-195 683.7 455 80.9
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 4.9e-191 671.4 361 95.0
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 4.9e-191 671.4 361 95.0
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 9.6e-187 657.1 462 76.2
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 2.7e-181 639.0 392 85.2
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 8.7e-172 607.4 355 87.3
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.6e-168 594.3 321 91.3
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 1.7e-159 566.6 461 69.2
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.9e-159 565.8 297 97.0
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 5.1e-156 555.1 283 96.1
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-152 543.9 318 86.5
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 3.6e-149 532.3 364 77.7
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.8e-132 474.6 463 59.2
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.5e-128 462.6 265 90.2
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.4e-126 454.5 284 82.4
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.8e-123 444.5 284 81.3
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 2.0e-120 436.8 365 66.8
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.0e-119 434.5 549 49.4
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 1.3e-114 417.5 254 84.3
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-113 414.5 222 95.5
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 3.1e-113 412.9 254 83.9
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 2.0e-107 393.7 254 81.1
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.5e-107 391.7 321 67.6
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.9e-106 389.8 312 70.5
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.9e-105 387.1 250 80.0
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 9.2e-105 384.8 203 96.1
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.9e-102 377.1 454 51.8
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 8.0e-101 371.7 274 72.6
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 8.0e-101 371.7 274 72.6
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 6.0e-96 355.5 268 71.3
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 6.6e-95 352.1 262 77.1
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 4.3e-94 349.4 404 54.7
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 2.8e-93 346.7 201 89.6
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.1e-92 344.7 188 94.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.7e-85 319.3 382 49.2
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.5e-83 314.3 235 71.9
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.1e-81 305.4 299 57.9
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-76 291.6 175 84.0
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 9.0e-76 288.5 165 90.9
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.4e-75 286.2 189 78.8
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.4e-75 286.2 189 78.8
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.4e-75 286.2 189 78.8
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 9.9e-75 285.0 189 78.3
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.6e-72 276.2 159 88.7
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 5.1e-71 272.7 189 75.7
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.3e-68 262.7 431 41.5
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 9.3e-65 251.9 328 47.9
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 3.5e-64 250.0 373 37.5
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 8.7e-63 245.4 378 46.0
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 6.2e-61 239.2 201 68.7
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 2.4e-60 237.3 122 98.4
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.9e-57 227.6 128 86.7
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 5.6e-54 216.1 138 81.9
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.1e-53 214.2 107 99.1
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 2.8e-53 213.8 158 71.5
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.8e-52 211.1 137 81.0
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.2e-50 204.1 136 79.4
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 1.4e-49 201.4 125 80.8
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 3.0e-47 193.7 94 96.8
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.4e-44 184.1 91 95.6
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 3.4e-43 180.3 153 67.3
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.4e-43 180.3 98 87.8
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 4.5e-43 179.9 197 52.8
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 2.2e-42 177.6 95 95.8
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 2.9e-42 177.2 250 46.8
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 7.2e-41 172.6 165 59.4
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 9.4e-41 172.2 91 90.1
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 4.6e-40 169.9 122 72.1
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 6.1e-40 169.5 211 52.6
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 8.8e-39 165.6 98 81.6
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 1.1e-38 165.2 91 92.3
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 1.7e-37 161.4 156 59.0
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 4.8e-37 159.8 81 92.6
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-36 157.9 169 53.8
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 2.0e-35 154.5 89 83.1
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 3.4e-35 153.7 134 58.2
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 1.7e-34 151.4 85 85.9
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 1.7e-34 151.4 74 97.3
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 6.5e-34 149.4 125 67.2
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 6.5e-34 149.4 168 57.1
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 1.4e-33 148.3 92 79.3
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 7.2e-33 146.0 112 72.3
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 4.7e-32 143.3 119 64.7
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 7.9e-32 142.5 129 62.8
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 2.6e-27 127.5 80 78.8
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.5e-27 127.1 68 88.2
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.5e-27 127.1 68 88.2
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 3.0e-23 114.0 109 58.7
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.0e-22 111.3 76 73.7
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-21 107.8 82 76.8
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 4.1e-20 103.6 53 88.7
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.0e-19 101.3 66 77.3
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 3.5e-19 100.5 65 76.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 4.5e-19 100.1 68 76.5
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 4.2e-17 93.6 47 95.7
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.2e-16 92.0 91 56.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.3e-13 82.0 223 32.3
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 3.7e-13 80.5 48 83.3
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 6.3e-13 79.7 50 80.0
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 6.3e-13 79.7 50 76.0
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 3.5e-11 73.9 33 97.0
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 6.5e-10 69.7 46 76.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-09 68.9 36 88.9
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 3.6e-08 63.9 55 63.6


User provided reference genes

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