Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 3.8e-171 604.7 303 100.0
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.6e-153 546.2 306 90.5
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.8e-150 535.4 305 89.2
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 8.7e-144 513.8 305 84.3
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 6.3e-142 507.7 306 84.3
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.1e-141 506.9 305 84.3
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.1e-141 505.0 305 83.9
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 5.3e-141 504.6 305 83.0
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 5.3e-141 504.6 309 82.8
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 6.9e-141 504.2 305 83.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 9.0e-141 503.8 305 83.9
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 5.9e-140 501.1 322 82.3
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.0e-139 500.4 305 83.6
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.7e-139 499.6 305 82.6
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.2e-139 499.2 358 75.1
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 8.5e-139 497.3 305 81.3
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.7e-137 492.3 306 81.0
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 7.9e-137 490.7 304 81.6
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.3e-136 490.0 303 81.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.9e-136 488.4 305 81.0
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 6.7e-136 487.6 303 78.9
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 8.7e-136 487.3 306 79.1
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.5e-135 486.5 311 81.0
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.9e-135 486.1 306 81.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.5e-135 485.7 340 74.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 9.7e-135 483.8 303 79.5
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 9.7e-135 483.8 327 76.8
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-134 482.6 303 78.2
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.7e-134 481.9 305 79.0
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 6.3e-134 481.1 305 80.3
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.2e-132 476.9 303 76.9
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.2e-132 476.9 305 78.0
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.5e-132 476.5 307 77.5
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.0e-132 476.1 293 80.2
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 3.4e-132 475.3 304 78.3
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.4e-132 475.3 306 78.4
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.3e-131 473.4 270 87.8
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.9e-131 472.2 304 77.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 3.8e-131 471.9 303 77.9
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 5.0e-131 471.5 307 77.9
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.1e-130 470.3 287 80.1
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.4e-130 469.9 305 76.7
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 3.2e-130 468.8 305 78.0
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 9.4e-130 467.2 303 77.2
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 9.4e-130 467.2 278 81.3
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 9.4e-130 467.2 303 77.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 9.4e-130 467.2 303 77.6
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 9.4e-130 467.2 305 75.4
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-129 466.8 303 77.2
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 3.6e-129 465.3 306 78.1
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.8e-128 463.0 290 80.7
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.8e-128 463.0 313 75.1
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 2.3e-128 462.6 270 84.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 3.0e-128 462.2 278 83.5
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.9e-128 461.8 305 75.7
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 3.9e-128 461.8 303 75.9
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 1.1e-127 460.3 312 74.4
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 4.4e-127 458.4 293 75.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.2e-126 456.1 315 72.7
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.8e-126 455.7 282 78.7
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 6.3e-126 454.5 318 73.0
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.4e-125 453.4 271 83.0
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.8e-125 453.0 279 78.1
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.4e-124 448.7 295 75.6
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 7.7e-124 447.6 306 74.5
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.3e-123 446.8 309 74.8
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.7e-123 446.4 271 83.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.9e-122 443.0 305 75.7
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 2.5e-122 442.6 295 74.6
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 7.2e-122 441.0 302 71.2
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 6.1e-121 438.0 303 71.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.1e-121 438.0 281 76.2
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 3.0e-120 435.6 303 71.3
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 3.0e-120 435.6 304 70.7
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 5.2e-120 434.9 306 70.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 3.3e-119 432.2 305 72.5
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 3.3e-119 432.2 305 69.8
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.8e-117 426.4 302 69.5
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 2.4e-117 426.0 305 69.2
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 5.3e-117 424.9 307 71.0
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.2e-116 423.7 315 70.2
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 2.0e-116 422.9 305 70.5
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.6e-116 422.5 286 73.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.8e-115 418.7 286 72.7
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.6e-113 413.3 309 68.6
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.6e-113 413.3 283 76.3
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 2.1e-113 412.9 309 68.6
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.3e-112 409.5 305 68.2
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 8.2e-110 401.0 280 73.2
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 2.4e-109 399.4 334 63.8
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.2e-108 397.1 280 67.9
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.6e-108 396.7 331 63.4
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 2.0e-108 396.4 303 67.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.0e-108 396.4 264 71.6
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 9.4e-106 387.5 288 67.7
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.8e-104 383.3 289 65.4
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.0e-104 382.5 331 62.2
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 4.4e-103 378.6 215 88.4
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.8e-102 375.2 306 69.0
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 8.3e-102 374.4 264 73.5
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.2e-100 370.5 265 70.9
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 2.0e-100 369.8 252 73.0
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.0e-100 369.8 264 72.0
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.7e-99 366.7 259 69.5
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 8.6e-99 364.4 243 71.2
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.1e-98 364.0 259 69.5
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.2e-95 354.0 261 67.4
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 3.4e-95 352.4 259 67.6
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.2e-94 349.7 275 62.9
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 3.1e-93 345.9 250 70.4
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.1e-90 337.4 204 81.4
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.6e-90 335.1 250 65.2
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 4.7e-89 332.0 215 78.6
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 6.8e-88 328.2 273 60.1
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.5e-87 327.0 250 63.6
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.0e-87 326.6 336 53.0
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.3e-86 323.9 257 68.5
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 3.0e-83 312.8 227 67.0
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.1e-80 302.8 250 60.8
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 2.0e-76 290.0 220 65.9
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 4.9e-62 242.3 287 47.0
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.6e-60 237.3 249 51.8
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 3.9e-59 232.6 283 43.1
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.9e-53 213.8 122 84.4
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.1e-50 204.5 156 67.9
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 9.6e-50 201.4 123 78.0
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 3.4e-47 193.0 122 77.9
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 1.1e-45 188.0 272 40.8
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 6.7e-43 178.7 259 39.8
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 2.4e-40 170.2 119 68.1
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-36 156.4 148 56.8
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.0e-35 154.8 88 85.2
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 4.5e-31 139.4 83 78.3
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 2.3e-27 127.1 107 63.6
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 3.9e-27 126.3 91 70.3
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.1e-24 116.7 72 76.4
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.5e-23 112.8 288 28.5
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 5.5e-21 105.9 292 30.1
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 7.2e-21 105.5 261 31.4
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.6e-20 104.4 317 26.8
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.3e-19 100.5 154 44.2
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 5.1e-19 99.4 107 52.3
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.3e-17 94.7 209 28.2
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 4.1e-16 89.7 61 67.2
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 3.4e-15 86.7 81 58.0
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 5.9e-15 85.9 75 60.0
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.4e-13 81.3 51 70.6
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 3.2e-13 80.1 69 60.9
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 3.6e-12 76.6 310 23.9
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 4.7e-12 76.3 310 23.9
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.0e-11 75.1 47 72.3
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.3e-09 68.2 59 61.0
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 4.8e-09 66.2 234 23.5
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 4.8e-09 66.2 39 76.9
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.5e-07 61.2 78 48.7


User provided reference genes

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