Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 2.2e-80 302.4 164 100.0
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 2.2e-61 239.2 129 98.4
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 6.3e-56 221.1 127 89.0
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 6.3e-56 221.1 127 89.0
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 3.1e-55 218.8 127 89.0
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 4.1e-55 218.4 127 88.2
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 1.2e-54 216.9 127 85.8
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 2.0e-54 216.1 127 85.8
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 3.5e-54 215.3 142 79.6
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 3.5e-54 215.3 127 85.0
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 4.5e-54 214.9 127 86.6
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 1.3e-53 213.4 127 85.0
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.3e-53 213.4 127 85.8
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.3e-53 213.4 127 85.8
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 1.7e-53 213.0 127 85.0
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 2.3e-53 212.6 126 86.5
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.3e-53 212.6 127 85.8
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.3e-53 212.6 127 85.8
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 5.0e-53 211.5 127 84.3
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 5.0e-53 211.5 127 85.0
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 8.6e-53 210.7 127 81.9
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 8.6e-53 210.7 127 82.7
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 1.5e-52 209.9 127 83.5
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 1.5e-52 209.9 127 81.1
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 1.9e-52 209.5 127 85.0
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 2.5e-52 209.1 127 83.5
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 4.2e-52 208.4 127 84.3
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 5.5e-52 208.0 127 84.3
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 5.5e-52 208.0 127 83.5
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 5.5e-52 208.0 126 84.9
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 7.2e-52 207.6 127 78.7
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 9.5e-52 207.2 127 82.7
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 1.2e-51 206.8 127 82.7
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 1.6e-51 206.5 127 83.5
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 1.6e-51 206.5 127 83.5
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 2.8e-51 205.7 120 85.0
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 4.7e-51 204.9 131 80.9
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 6.1e-51 204.5 127 81.9
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 1.0e-50 203.8 126 82.5
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 1.0e-50 203.8 127 81.9
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 1.0e-50 203.8 127 81.9
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-50 203.8 127 81.1
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 1.8e-50 203.0 127 78.7
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 1.8e-50 203.0 127 79.5
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 1.8e-50 203.0 127 79.5
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 1.8e-50 203.0 127 81.1
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 2.3e-50 202.6 127 80.3
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.0e-50 201.8 127 81.1
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 4.0e-50 201.8 127 79.5
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 5.2e-50 201.4 126 81.7
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 8.9e-50 200.7 126 81.7
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 1.5e-49 199.9 127 76.4
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 1.5e-49 199.9 127 77.2
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 2.0e-49 199.5 128 80.5
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 2.6e-49 199.1 127 78.7
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.4e-49 198.7 127 79.5
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 4.4e-49 198.4 127 79.5
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 5.7e-49 198.0 127 79.5
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 5.7e-49 198.0 128 81.2
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 5.7e-49 198.0 127 79.5
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 5.7e-49 198.0 127 79.5
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 5.7e-49 198.0 127 79.5
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 7.5e-49 197.6 127 78.7
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 9.8e-49 197.2 146 69.2
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 9.8e-49 197.2 127 78.7
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 2.2e-48 196.1 128 78.9
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 2.8e-48 195.7 127 78.7
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 6.3e-48 194.5 127 78.0
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 6.3e-48 194.5 128 75.0
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 8.3e-48 194.1 127 77.2
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 1.1e-47 193.7 127 77.2
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 1.4e-47 193.4 127 78.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.8e-47 193.0 123 79.7
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 4.1e-47 191.8 127 74.8
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 5.4e-47 191.4 127 78.0
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 7.0e-47 191.0 127 75.6
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 9.2e-47 190.7 127 76.4
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 1.2e-46 190.3 106 89.6
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 1.6e-46 189.9 135 71.1
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.6e-46 189.9 127 74.8
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.0e-46 189.5 127 74.0
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 2.7e-46 189.1 127 73.2
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 2.7e-46 189.1 127 74.0
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 3.5e-46 188.7 127 74.0
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 3.5e-46 188.7 127 75.6
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 3.5e-46 188.7 127 74.8
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 3.5e-46 188.7 127 78.0
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 3.5e-46 188.7 127 73.2
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 7.8e-46 187.6 127 74.8
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 7.8e-46 187.6 127 73.2
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 7.8e-46 187.6 123 76.4
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 2.3e-45 186.0 127 72.4
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 2.3e-45 186.0 127 73.2
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 2.3e-45 186.0 127 73.2
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 2.3e-45 186.0 127 72.4
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 2.9e-45 185.7 127 72.4
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 2.9e-45 185.7 140 68.6
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 6.6e-45 184.5 127 71.7
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 6.6e-45 184.5 127 72.4
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 1.1e-44 183.7 127 69.3
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 3.3e-44 182.2 123 74.8
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 4.3e-44 181.8 127 68.5
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.6e-43 179.9 127 73.2
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 2.1e-43 179.5 127 72.4
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 2.1e-43 179.5 125 73.6
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 2.1e-43 179.5 125 73.6
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 2.1e-43 179.5 127 70.1
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.0e-42 177.2 114 78.9
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.6e-41 172.6 136 68.4
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.8e-33 144.1 86 86.0
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 4.9e-32 141.7 135 57.0
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 6.0e-30 134.8 125 54.4
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 3.3e-28 129.0 129 52.7
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 9.9e-25 117.5 122 52.5
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.2e-18 95.1 90 55.6
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 8.9e-18 94.4 100 49.0
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.5e-17 93.6 59 72.9
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.9e-16 88.6 58 70.7
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.1e-12 77.4 84 53.6
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 8.1e-11 71.2 51 68.6
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.4e-10 70.5 133 33.8
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 1.9e-07 60.1 48 54.2
Solyc07g040661.1 Solanum lycopersicum HOM05D003586 ORTHO05D051155 3.2e-07 59.3 72 43.1


User provided reference genes

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