Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 2.8e-203 711.8 394 100.0
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.7e-184 649.4 394 91.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.8e-181 639.4 394 90.4
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.9e-178 629.4 394 88.3
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 5.4e-178 627.9 394 87.1
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.7e-176 622.9 394 88.3
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 3.1e-173 612.1 394 86.5
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 3.1e-173 612.1 410 84.6
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 6.8e-173 610.9 438 79.9
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 8.9e-173 610.5 394 85.5
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.5e-172 609.8 394 83.8
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 9.8e-172 607.1 394 86.0
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 2.2e-171 605.9 394 85.8
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 2.2e-171 605.9 394 85.0
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 2.2e-171 605.9 394 85.0
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 4.9e-171 604.7 394 84.3
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 6.4e-171 604.4 394 84.0
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.3e-171 604.0 394 84.3
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.3e-171 604.0 394 84.3
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 2.4e-170 602.4 394 83.2
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 9.2e-170 600.5 394 84.3
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-169 600.1 394 83.5
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-169 600.1 394 83.5
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.6e-169 599.7 394 82.7
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 2.1e-169 599.4 394 84.5
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 3.5e-169 598.6 394 84.8
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 6.0e-169 597.8 395 85.1
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.8e-169 597.4 394 83.2
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 7.8e-169 597.4 394 84.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.0e-168 597.0 394 84.5
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 2.3e-168 595.9 394 84.3
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 5.1e-168 594.7 395 84.6
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.9e-167 592.8 394 83.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 1.2e-166 590.1 394 84.0
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 2.8e-166 589.0 394 82.2
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 3.6e-166 588.6 394 81.0
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 8.1e-166 587.4 404 83.9
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 8.1e-166 587.4 394 83.0
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.3e-165 585.9 394 81.5
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 8.9e-165 583.9 394 81.7
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 8.9e-165 583.9 392 81.4
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.5e-164 583.2 394 82.0
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.5e-164 583.2 394 81.7
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 5.8e-164 581.3 394 82.0
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 7.6e-164 580.9 394 81.7
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 3.8e-163 578.6 417 78.9
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 3.2e-162 575.5 396 80.1
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 4.1e-162 575.1 394 77.4
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 2.1e-161 572.8 370 85.9
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 3.5e-161 572.0 394 81.2
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.7e-160 569.7 394 81.7
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 5.1e-160 568.2 394 76.9
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 6.6e-160 567.8 394 78.4
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 6.6e-160 567.8 394 81.0
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.1e-159 567.0 397 81.1
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 3.6e-158 562.0 370 85.4
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 4.0e-157 558.5 378 81.5
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 5.2e-157 558.1 394 73.1
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 6.9e-157 557.8 394 72.8
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 9.0e-157 557.4 394 74.9
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 4.4e-156 555.1 394 72.3
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.1e-154 550.4 394 71.8
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.1e-154 550.4 394 70.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 4.2e-154 548.5 394 71.6
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.7e-153 545.8 397 72.0
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.7e-152 543.1 426 74.9
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 8.7e-152 540.8 396 79.8
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.5e-151 540.0 396 79.8
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.9e-151 539.7 394 78.7
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.5e-151 539.3 393 77.6
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 5.6e-151 538.1 394 72.1
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 4.8e-150 535.0 394 78.2
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.1e-149 533.9 394 69.5
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 1.4e-149 533.5 394 78.4
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.4e-149 533.5 395 76.7
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 2.4e-149 532.7 394 77.7
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 4.0e-149 531.9 394 70.6
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-148 530.4 394 70.1
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 3.4e-148 528.9 394 77.9
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 3.4e-148 528.9 395 74.9
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 7.6e-148 527.7 394 69.8
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 7.6e-148 527.7 394 69.8
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 1.3e-147 526.9 399 69.7
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.7e-147 526.6 394 78.7
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 5.4e-146 521.5 394 76.6
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 3.0e-144 515.8 411 73.7
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 5.6e-143 511.5 378 70.4
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 3.7e-142 508.8 405 74.3
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.2e-142 508.1 395 73.2
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 9.9e-140 500.7 387 75.5
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.1e-138 497.3 358 73.7
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.4e-138 496.9 398 71.6
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.3e-134 483.8 394 74.4
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 1.5e-132 476.9 403 64.8
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.5e-130 469.5 394 64.0
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 9.7e-127 457.6 372 73.4
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 3.9e-120 435.6 394 58.9
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.4e-114 417.2 346 74.0
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.3e-112 409.8 382 61.0
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 5.3e-101 372.1 394 56.6
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 9.1e-101 371.3 287 76.3
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 7.2e-98 361.7 328 69.5
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 7.2e-98 361.7 396 52.8
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.7e-92 343.2 398 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.0e-91 341.3 399 49.6
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 7.2e-90 335.1 246 67.9
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 3.3e-82 309.7 378 51.1
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 2.4e-77 293.5 302 57.0
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.7e-76 290.0 295 54.2
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 1.8e-72 277.3 390 53.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.5e-71 274.2 182 73.6
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 4.4e-71 272.7 182 73.1
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 3.7e-62 243.0 292 50.3
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.7e-54 217.6 122 89.3
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 8.3e-54 215.3 540 32.0
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 7.8e-52 208.8 153 75.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 7.3e-50 202.2 165 64.2
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.1e-48 198.4 422 32.9
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.1e-48 198.4 205 55.6
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 2.1e-44 184.1 125 76.0
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 2.1e-41 174.1 424 33.7
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.4e-40 170.6 165 53.3
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 2.4e-37 160.6 398 31.2
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.0e-35 155.2 92 83.7
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-32 144.4 122 60.7
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 9.0e-32 142.1 125 68.0
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-31 141.7 111 70.3
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.5e-31 141.4 71 88.7
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 6.7e-27 125.9 148 44.6
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.5e-26 124.8 131 52.7
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 1.9e-26 124.4 150 45.3
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 2.5e-26 124.0 71 85.9
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.3e-26 123.6 88 69.3
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 2.8e-25 120.6 130 67.7
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 4.8e-25 119.8 106 58.5
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.5e-18 98.2 50 84.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 7.4e-18 95.9 80 67.5
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.4e-15 87.0 48 72.9
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-14 85.1 106 47.2
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.2e-14 84.3 51 82.4
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 6.5e-14 82.8 46 87.0
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 9.3e-13 79.0 44 88.6
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.5e-10 71.6 38 92.1
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.5e-10 70.9 77 45.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 2.5e-10 70.9 41 75.6
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 3.3e-10 70.5 35 100.0
MBI14_g47597_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 7.7e-07 59.3 50 66.0


User provided reference genes

Program Settings