Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv06170 Davidia involucrata HOM05D060011 ORTHO05D045116 3.0e-87 325.1 156 100.0
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 1.5e-27 126.7 114 64.9
Dinv04940 Davidia involucrata HOM05D060011 ORTHO05D045116 7.2e-25 117.9 55 92.7
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.8e-20 103.2 114 53.5
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.2e-18 96.3 114 52.6
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 2.2e-18 96.3 114 52.6
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 6.5e-18 94.7 113 49.6
Dinv29240 Davidia involucrata HOM05D003194 ORTHO05D003790 8.5e-18 94.4 53 84.9
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 3.2e-17 92.4 112 49.1
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 3.6e-16 89.0 111 48.6
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 4.7e-16 88.6 114 48.2
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 6.1e-16 88.2 114 50.0
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 3.0e-15 85.9 113 46.9
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 3.9e-15 85.5 112 46.4
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 1.1e-14 84.0 115 45.2
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 1.5e-14 83.6 112 45.5
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 1.5e-14 83.6 114 44.7
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 1.5e-14 83.6 112 47.3
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 2.0e-14 83.2 112 46.4
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 2.6e-14 82.8 112 44.6
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 2.6e-14 82.8 112 47.3
unitig_699.g19718 Utricularia gibba HOM05D004718 ORTHO05D005838 2.6e-14 82.8 132 42.4
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 3.3e-14 82.4 112 49.1
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 3.3e-14 82.4 114 45.6
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 4.4e-14 82.0 111 45.9
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 7.4e-14 81.3 112 44.6
Cpa.g.sc42.63 Carica papaya HOM05D004718 ORTHO05D005838 9.7e-14 80.9 112 43.8
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 1.7e-13 80.1 112 44.6
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 2.2e-13 79.7 113 46.9
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 2.8e-13 79.3 112 45.5
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 4.8e-13 78.6 113 42.5
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 4.8e-13 78.6 112 46.4
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 6.3e-13 78.2 112 42.9
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 6.3e-13 78.2 116 44.8
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 6.3e-13 78.2 112 46.4
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 8.2e-13 77.8 113 43.4
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 1.1e-12 77.4 112 43.8
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 1.1e-12 77.4 112 42.9
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 1.4e-12 77.0 112 42.0
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 1.4e-12 77.0 112 42.9
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 1.8e-12 76.6 112 44.6
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.8e-12 76.6 112 43.8
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 1.8e-12 76.6 111 44.1
CARHR158620 Cardamine hirsuta HOM05D004718 ORTHO05D005838 2.4e-12 76.3 112 43.8
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 3.1e-12 75.9 112 41.1
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 3.1e-12 75.9 112 42.0
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 4.1e-12 75.5 112 42.9
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 5.3e-12 75.1 112 42.9
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 5.3e-12 75.1 112 44.6
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 5.3e-12 75.1 111 44.1
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 7.0e-12 74.7 112 41.1
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 7.0e-12 74.7 112 42.0
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 9.1e-12 74.3 112 43.8
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 9.1e-12 74.3 112 41.1
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 1.2e-11 73.9 112 41.1
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 1.2e-11 73.9 112 42.9
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 1.2e-11 73.9 112 43.8
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 1.2e-11 73.9 110 43.6
Eucgr.E04341 Eucalyptus grandis HOM05D004718 ORTHO05D005838 1.6e-11 73.6 112 41.1
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 2.0e-11 73.2 112 42.9
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 2.6e-11 72.8 112 39.3
PGSC0003DMG401018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 3.5e-11 72.4 111 45.0
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 4.5e-11 72.0 112 42.9
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 4.5e-11 72.0 112 42.9
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 4.5e-11 72.0 112 42.0
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 5.9e-11 71.6 112 40.2
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 5.9e-11 71.6 112 40.2
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 5.9e-11 71.6 112 40.2
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 5.9e-11 71.6 112 40.2
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 5.9e-11 71.6 112 41.1
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 5.9e-11 71.6 112 41.1
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 7.7e-11 71.2 111 42.3
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 7.7e-11 71.2 112 40.2
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 1.0e-10 70.9 112 42.0
Os03g0192800 Oryza sativa ssp. japonica HOM05D004718 ORTHO05D005838 1.0e-10 70.9 112 40.2
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 1.3e-10 70.5 112 42.9
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 1.3e-10 70.5 111 41.4
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 1.3e-10 70.5 112 42.0
HPP92_023162 Vanilla planifolia HOM05D004718 ORTHO05D005838 1.3e-10 70.5 114 38.6
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 1.7e-10 70.1 112 42.9
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 1.7e-10 70.1 112 42.9
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 2.2e-10 69.7 112 42.9
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 2.2e-10 69.7 112 42.9
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 2.9e-10 69.3 111 39.6
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 2.9e-10 69.3 112 41.1
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 2.9e-10 69.3 108 42.6
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 3.8e-10 68.9 111 41.4
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 3.8e-10 68.9 111 41.4
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 3.8e-10 68.9 111 41.4
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 5.0e-10 68.6 112 43.8
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 6.5e-10 68.2 111 41.4
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 6.5e-10 68.2 111 41.4
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 6.5e-10 68.2 112 36.6
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 1.9e-09 66.6 112 38.4
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 1.9e-09 66.6 114 39.5
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 2.5e-09 66.2 111 42.3
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 4.2e-09 65.5 110 40.9
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 7.2e-09 64.7 112 39.3
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 9.4e-09 64.3 112 39.3
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 1.6e-08 63.5 112 38.4
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 2.7e-08 62.8 112 38.4
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 3.6e-08 62.4 112 38.4
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 8.0e-08 61.2 112 37.5
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 8.0e-08 61.2 112 40.2
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 1.4e-07 60.5 51 56.9
vmacro12747 Vaccinium macrocarpon HOM05D004718 ORTHO05D005838 1.8e-07 60.1 90 44.4
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 4.0e-07 58.9 113 38.9
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 8.8e-07 57.8 112 38.4
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 2.6e-06 56.2 114 35.1
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 4.4e-06 55.5 112 36.6
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 4.4e-06 55.5 112 36.6
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 7.5e-06 54.7 109 38.5


User provided reference genes

Program Settings