Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 2405.9 1278 100.0
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 2062.0 1360 80.7
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1676.4 1360 67.7
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1608.6 1372 65.0
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1590.1 1364 64.0
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1569.3 1364 63.1
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1565.8 1362 64.5
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1557.7 1478 61.4
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1545.4 1357 63.1
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1537.7 1361 64.9
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1525.0 1359 62.1
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1508.0 1337 63.5
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1504.2 1401 61.2
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1479.9 1356 61.3
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1479.2 1357 61.5
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1478.4 1493 57.5
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1476.5 1357 61.5
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1466.1 1453 59.9
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1452.6 1335 61.1
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1438.3 1362 59.4
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1420.2 1358 60.0
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1391.7 1410 59.8
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1391.3 1366 57.0
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1386.7 1372 57.1
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1372.8 1359 57.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1366.7 1341 58.0
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1350.1 1435 54.4
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1346.3 1361 57.0
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1342.8 1350 58.4
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1341.3 1302 62.3
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1338.9 1351 57.5
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1337.4 1349 57.4
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1336.6 1379 58.1
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1323.9 1340 56.1
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1323.9 1366 55.4
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1322.4 1364 58.4
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1318.1 1367 56.9
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1311.6 1345 55.3
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1309.3 1339 55.0
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1308.1 1350 55.5
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1298.1 1357 57.3
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1298.1 1361 54.7
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1296.2 1337 57.2
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1295.8 1356 57.4
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1292.3 1302 59.7
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1291.9 1365 56.1
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1285.4 1367 54.1
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1281.5 1406 54.1
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1279.2 1389 54.3
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1278.1 1350 54.8
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1266.1 1424 54.2
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1263.4 1389 54.4
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1263.1 1350 53.6
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1261.9 1350 56.1
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1255.4 1376 53.3
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1246.9 1359 53.4
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1245.3 1359 53.6
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1236.9 1406 50.9
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1236.5 1348 53.4
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1234.9 1394 56.5
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1232.6 1350 55.3
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1231.5 1395 52.1
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1229.2 1355 54.5
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1216.4 1395 51.6
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1212.2 1397 51.8
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1196.4 1251 57.6
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1186.0 1332 51.2
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1182.5 1370 51.6
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1178.7 1321 51.6
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1166.0 1422 49.4
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1165.2 1323 54.2
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 1355 50.0
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1161.4 1356 51.2
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1149.4 1363 51.1
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1147.9 1365 49.5
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1145.2 1364 50.7
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1144.8 1354 50.4
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1141.3 1360 50.3
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1136.3 1355 50.4
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1134.8 1362 50.4
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1130.2 1357 50.3
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1129.8 1363 50.2
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1128.2 1355 51.7
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1127.1 1356 51.8
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1124.0 1364 50.0
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1121.7 1363 50.0
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1121.7 1363 50.0
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1121.7 1363 50.0
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1083.6 1055 59.0
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.1e-304 1050.4 914 64.2
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 3.9e-302 1042.0 1340 47.6
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 2.1e-284 983.0 1329 45.1
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 5.8e-282 974.9 913 61.3
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 4.3e-277 958.7 1259 47.5
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.9e-272 943.3 1126 49.9
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 2.5e-269 932.9 1369 43.5
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.9e-249 866.3 825 59.8
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.0e-230 804.7 705 63.3
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 8.3e-228 795.0 925 52.2
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 1.4e-219 767.7 845 53.7
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.2e-215 754.6 717 59.1
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 1.5e-200 704.5 599 61.6
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 1.1e-192 678.3 641 64.6
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 6.2e-191 672.5 702 56.4
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 6.6e-185 652.5 788 51.0
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 1.3e-161 575.1 507 60.6
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.9e-155 554.7 845 46.6
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.4e-150 537.7 480 66.5
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.4e-139 501.9 358 73.7
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 4.4e-136 490.3 1274 31.2
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 8.5e-132 476.1 358 67.6
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 3.1e-126 457.6 358 64.8
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.2e-111 408.3 774 36.7
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.4e-110 405.6 678 37.8
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 5.6e-107 393.7 1318 27.8
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 1.2e-104 386.0 1141 30.8
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 7.3e-99 366.7 1131 28.9
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.7e-92 345.5 322 58.7
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.3e-91 340.9 379 47.5
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 7.3e-91 340.1 238 68.9
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 7.8e-85 320.1 493 43.6
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.2e-82 312.8 347 48.1
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 6.2e-82 310.5 235 71.1
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 4.6e-77 294.3 376 49.7
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.2e-71 275.4 325 49.8
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.8e-60 239.2 272 51.5
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 4.3e-59 234.6 288 44.4
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.9e-47 194.5 174 63.2
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.5e-43 182.2 182 64.3
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.1e-42 179.1 282 44.0
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 3.2e-38 165.2 301 39.2
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 4.6e-37 161.4 296 36.8
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 2.0e-32 146.0 217 44.7
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.0e-28 132.1 120 60.8
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.2e-26 125.9 166 45.8
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.8e-25 122.9 85 69.4
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 9.1e-25 120.6 424 23.6
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 3.2e-22 112.1 203 36.0
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 2.2e-18 99.4 247 30.0
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.2e-18 99.4 115 53.9
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 3.1e-17 95.5 86 60.5
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 4.1e-17 95.1 104 53.8
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 9.1e-17 94.0 468 27.1
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.7e-16 90.9 284 26.4
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.3e-15 90.1 70 64.3
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 2.9e-15 89.0 398 26.9
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 4.5e-08 65.1 98 43.9
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.7e-07 63.2 45 64.4


User provided reference genes

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