Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.6e-77 293.5 161 100.0
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 1.1e-65 254.2 153 92.2
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 5.9e-64 248.4 153 89.5
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.3e-63 247.3 150 90.0
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.7e-63 246.9 153 89.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 5.0e-63 245.4 153 88.9
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.9e-62 243.4 151 88.1
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 4.2e-62 242.3 150 88.7
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.2e-61 240.7 153 85.0
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 3.6e-61 239.2 151 87.4
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 6.1e-61 238.4 153 86.3
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.0e-60 237.7 153 85.6
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 1.0e-60 237.7 144 89.6
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 1.0e-60 237.7 150 88.7
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.0e-60 237.7 153 86.3
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 1.4e-60 237.3 151 87.4
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.4e-60 237.3 153 83.0
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.4e-60 237.3 154 87.0
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 2.3e-60 236.5 150 88.0
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.3e-60 236.5 153 83.0
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 4.0e-60 235.7 149 89.3
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 5.2e-60 235.3 146 88.4
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 8.8e-60 234.6 150 83.3
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 8.8e-60 234.6 153 83.7
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 2.0e-59 233.4 150 87.3
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.0e-59 233.4 153 81.7
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 4.4e-59 232.3 151 84.1
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 7.5e-59 231.5 153 83.7
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 9.7e-59 231.1 152 84.9
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.3e-58 230.7 152 82.2
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.7e-58 230.3 151 82.8
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 4.8e-58 228.8 153 83.0
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 6.3e-58 228.4 153 83.7
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.1e-57 227.6 150 83.3
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 1.8e-57 226.9 153 83.7
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.4e-57 226.5 166 76.5
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 4.1e-57 225.7 150 84.7
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 5.3e-57 225.3 150 83.3
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 7.0e-57 224.9 149 82.6
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 7.0e-57 224.9 150 86.7
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 7.0e-57 224.9 150 83.3
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 7.0e-57 224.9 172 76.2
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-56 224.2 153 72.5
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 2.0e-56 223.4 150 84.0
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.0e-56 223.4 146 83.6
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.7e-56 223.0 149 85.2
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 3.5e-56 222.6 150 82.0
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 5.9e-56 221.9 153 80.4
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 2.2e-55 219.9 152 80.3
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 2.2e-55 219.9 150 84.0
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.2e-54 215.7 142 80.3
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 6.1e-53 211.8 150 78.7
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 8.0e-53 211.5 164 75.6
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.4e-52 210.7 150 78.7
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 3.0e-52 209.5 154 78.6
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 3.0e-52 209.5 191 67.0
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 5.2e-52 208.8 150 80.0
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 8.8e-52 208.0 157 75.8
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 8.8e-52 208.0 130 87.7
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.2e-51 207.6 153 73.9
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 9.8e-51 204.5 134 86.6
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-50 204.1 141 82.3
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.8e-50 203.0 150 78.0
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 3.7e-50 202.6 150 80.0
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 8.3e-50 201.4 153 75.2
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 1.1e-49 201.1 152 75.0
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 1.1e-49 201.1 152 75.0
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.1e-49 201.1 153 74.5
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.1e-49 201.1 133 88.0
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.8e-49 200.3 153 74.5
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.8e-49 200.3 153 76.5
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 1.8e-49 200.3 153 75.2
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 3.1e-49 199.5 149 77.2
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 5.9e-48 195.3 153 73.2
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 5.0e-47 192.2 145 75.9
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 8.5e-47 191.4 152 72.4
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 1.9e-46 190.3 150 74.7
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.2e-46 189.5 173 59.0
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 7.2e-46 188.3 143 75.5
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 2.7e-45 186.4 123 84.6
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.7e-45 185.7 126 84.1
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.0e-44 184.5 117 87.2
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 4.0e-44 182.6 145 72.4
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-43 181.0 155 61.9
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 7.5e-43 178.3 201 49.3
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 1.8e-41 173.7 134 73.9
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.2e-40 171.0 152 64.5
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.2e-40 171.0 142 60.6
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 5.9e-40 168.7 178 61.2
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 7.7e-40 168.3 89 88.8
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.3e-39 167.5 123 76.4
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 2.3e-39 166.8 134 72.4
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 3.3e-38 162.9 153 62.7
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 4.3e-38 162.5 92 82.6
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-37 161.0 171 60.8
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 3.0e-36 156.4 114 75.4
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 8.9e-36 154.8 152 55.9
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.2e-35 154.5 152 61.8
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.2e-35 154.5 151 59.6
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.6e-35 153.3 95 76.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 3.7e-34 149.4 140 59.3
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 4.9e-34 149.1 92 77.2
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 6.4e-34 148.7 129 67.4
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 5.4e-33 145.6 150 62.0
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 9.2e-33 144.8 153 52.3
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.2e-32 144.4 117 70.9
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-30 137.9 121 70.2
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 2.5e-30 136.7 139 61.2
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.1e-29 133.7 92 69.6
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 2.8e-29 133.3 95 68.4
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.7e-29 132.5 132 59.8
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 6.2e-29 132.1 129 51.2
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.4e-28 131.0 133 61.7
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 2.3e-28 130.2 92 68.5
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 2.3e-28 130.2 122 69.7
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.1e-28 129.8 131 53.4
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 8.9e-28 128.3 147 56.5
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.4e-27 125.9 90 64.4
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 7.5e-27 125.2 93 67.7
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.3e-26 124.4 141 56.7
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 2.9e-26 123.2 93 68.8
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 3.7e-26 122.9 137 53.3
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-25 120.9 123 63.4
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-25 120.2 97 66.0
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 2.4e-25 120.2 130 58.5
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.0e-25 118.6 92 57.6
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 6.0e-24 115.5 119 63.9
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-22 111.3 115 57.4
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 2.8e-21 106.7 107 64.5
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 4.7e-21 105.9 117 59.8
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 1.3e-18 97.8 89 55.1
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.9e-18 96.7 80 81.2
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 3.7e-18 96.3 49 85.7
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.9e-18 95.9 118 46.6
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.3e-18 95.1 115 45.2
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.9e-17 94.0 49 83.7
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 9.2e-17 91.7 113 44.2
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-16 91.3 140 37.9
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-16 91.3 87 52.9
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.7e-16 90.1 113 46.0
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.6e-16 89.4 86 53.5
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.0e-16 89.0 173 39.9
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.0e-15 88.2 45 86.7
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 3.9e-15 86.3 113 45.1
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.6e-13 80.9 136 40.4
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.8e-13 80.1 45 75.6
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.7e-13 79.3 63 54.0
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 8.1e-13 78.6 62 56.5
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.1e-13 78.6 62 56.5
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 8.1e-13 78.6 46 76.1
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.0e-12 76.3 81 44.4
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.2e-11 74.7 45 77.8
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-11 74.7 81 53.1
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 2.6e-11 73.6 37 81.1
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.6e-11 73.6 163 40.5
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.9e-11 71.6 66 51.5
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.3e-10 71.2 37 78.4
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-10 70.9 92 42.4
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 2.2e-10 70.5 50 66.0
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.1e-09 68.2 37 75.7
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-09 68.2 136 45.6
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 2.3e-07 60.5 38 63.2
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.0e-07 60.1 60 50.0
HanXRQChr12g0369131 Helianthus annuus HOM05D000515 ORTHO05D022581 9.6e-06 55.1 36 66.7


User provided reference genes

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