Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 1.4e-145 519.6 264 100.0
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 6.5e-135 484.2 254 96.9
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 9.4e-110 400.6 240 85.0
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 5.9e-80 301.6 244 68.0
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.0e-79 300.8 245 67.3
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.0e-79 300.8 243 67.1
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 3.8e-79 298.9 262 63.4
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 2.8e-77 292.7 247 68.8
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 1.8e-76 290.0 243 66.7
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 2.3e-76 289.7 246 64.6
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 5.2e-76 288.5 243 68.3
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 1.2e-75 287.3 246 63.8
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.7e-74 282.3 241 66.8
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 2.4e-73 279.6 244 63.1
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 7.0e-73 278.1 244 63.1
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.0e-72 276.6 242 63.6
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.7e-72 276.2 244 62.3
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 5.9e-72 275.0 243 63.8
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 7.8e-72 274.6 242 63.2
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 1.7e-71 273.5 245 62.4
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 6.6e-71 271.6 245 64.5
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 1.5e-70 270.4 243 65.8
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 2.1e-69 266.5 147 88.4
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 2.1e-69 266.5 242 61.2
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 8.0e-69 264.6 243 63.4
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.4e-68 263.8 244 59.4
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 6.8e-68 261.5 242 64.9
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 6.8e-68 261.5 244 63.1
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 2.0e-67 260.0 242 59.9
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 4.4e-67 258.8 244 59.4
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 7.5e-67 258.1 253 57.3
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 2.9e-66 256.1 245 60.8
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 2.9e-66 256.1 245 60.8
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.9e-65 253.4 243 60.9
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 2.4e-65 253.1 241 58.9
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 7.0e-65 251.5 243 61.3
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 7.0e-65 251.5 244 59.0
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.2e-64 250.8 238 62.2
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 7.8e-64 248.1 243 60.1
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.3e-63 246.5 243 60.1
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 3.9e-63 245.7 247 60.3
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 6.2e-61 238.4 248 57.7
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 6.2e-61 238.4 247 55.5
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 1.1e-60 237.7 249 56.2
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 2.3e-60 236.5 245 55.5
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.2e-59 234.2 245 55.1
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.5e-59 231.5 245 54.7
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 2.9e-58 229.6 245 53.9
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.7e-58 229.2 245 54.3
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.9e-57 226.9 249 55.0
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 1.2e-56 224.2 220 57.7
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 2.1e-56 223.4 242 53.7
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 3.3e-54 216.1 248 51.2
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 9.5e-54 214.5 218 56.0
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 1.4e-52 210.7 246 52.0
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 3.1e-52 209.5 218 55.0
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 4.0e-52 209.1 248 52.0
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.2e-51 207.6 257 51.8
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 3.4e-51 206.1 247 50.2
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 7.6e-51 204.9 255 48.6
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 7.6e-51 204.9 242 53.7
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 9.9e-51 204.5 211 54.0
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 9.9e-51 204.5 211 54.0
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 1.3e-50 204.1 239 52.7
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.9e-50 202.2 242 54.1
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 8.4e-50 201.4 225 54.7
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 8.4e-50 201.4 243 51.4
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.4e-49 200.7 244 49.2
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 1.9e-49 200.3 242 52.9
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 9.2e-49 198.0 241 51.0
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 1.6e-48 197.2 242 53.3
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 7.8e-48 194.9 204 55.4
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 1.5e-46 190.7 243 49.4
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 1.9e-46 190.3 242 48.3
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 5.6e-46 188.7 240 51.2
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 4.7e-45 185.7 227 52.0
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 4.7e-45 185.7 218 50.9
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 6.2e-45 185.3 218 51.8
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.1e-44 184.5 229 51.1
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.4e-44 184.1 264 47.0
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 4.4e-43 179.1 241 48.1
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 5.4e-41 172.2 241 46.5
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.6e-40 170.6 241 47.3
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 1.3e-37 161.0 247 45.3
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 1.2e-35 154.5 168 56.0
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 8.4e-34 148.3 242 45.5
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 1.9e-33 147.1 254 41.3
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 4.2e-33 146.0 243 42.8
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 9.3e-33 144.8 239 42.7
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.3e-31 140.2 236 40.3
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 3.0e-31 139.8 239 40.6
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 9.6e-30 134.8 221 41.6
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 2.1e-29 133.7 110 70.9
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 4.8e-29 132.5 207 42.5
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 1.4e-28 131.0 202 45.5
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 2.4e-28 130.2 237 42.6
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 2.4e-28 130.2 127 57.5
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 3.1e-28 129.8 252 38.1
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 6.4e-26 122.1 242 40.1
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 6.4e-26 122.1 242 40.1
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 8.4e-26 121.7 235 40.4
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 8.4e-26 121.7 235 40.4
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 1.1e-25 121.3 249 38.2
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.1e-25 121.3 202 40.1
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 1.4e-25 120.9 242 39.7
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 4.2e-25 119.4 240 39.6
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 4.2e-25 119.4 240 39.6
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 1.6e-24 117.5 205 40.5
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.7e-24 116.7 251 36.7
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 4.6e-24 115.9 257 35.0
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 7.9e-24 115.2 237 33.8
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 1.1e-22 111.3 243 35.8
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.5e-22 110.9 241 35.7
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 9.6e-22 108.2 228 36.0
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 2.8e-21 106.7 232 35.3
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 6.2e-21 105.5 235 36.6
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 1.0e-18 98.2 174 44.8
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 1.0e-18 98.2 231 35.5
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 7.1e-17 92.0 113 55.8
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 5.7e-14 82.4 196 31.6
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 9.6e-14 81.6 208 31.7
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 9.0e-12 75.1 186 32.8
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 5.9e-11 72.4 112 41.1
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 1.4e-09 67.8 237 30.0
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 4.2e-09 66.2 193 27.5
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 5.5e-09 65.9 133 39.1
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 7.2e-09 65.5 212 28.8
DCAR_012866 Daucus carota HOM05D001755 ORTHO05D001665 1.6e-08 64.3 245 26.9
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 1.6e-08 64.3 224 27.7
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 4.6e-08 62.8 251 25.5
Lj4C91T0 Lonicera japonica HOM05D001755 ORTHO05D001665 7.9e-08 62.0 293 25.3
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 1.3e-07 61.2 267 26.6
Sed0009224 Sechium edule HOM05D001755 ORTHO05D001665 1.8e-07 60.8 235 25.5
Ah.05g170640 Amaranthus hybridus HOM05D001755 ORTHO05D001665 2.3e-07 60.5 241 26.6
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 2.3e-07 60.5 75 45.3
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 3.9e-07 59.7 264 26.1
Peaxi162Scf00281g00710 Petunia axillaris HOM05D001755 ORTHO05D001665 3.9e-07 59.7 242 26.4
Aqoxy5G01330 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 5.1e-07 59.3 232 27.2
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 5.1e-07 59.3 44 56.8
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 5.1e-07 59.3 244 26.6
EL10Ac1g01104 Beta vulgaris HOM05D001755 ORTHO05D001665 6.7e-07 58.9 238 25.6
Oeu029675.1 Olea europaea HOM05D001755 ORTHO05D001665 8.7e-07 58.5 307 22.5
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 1.1e-06 58.2 247 26.3
Lsat_1_v5_gn_1_2200 Lactuca sativa HOM05D001755 ORTHO05D001665 1.9e-06 57.4 221 25.8
SGA_v2.0_scaffold145G36024 Striga asiatica HOM05D001755 ORTHO05D001665 3.3e-06 56.6 276 23.2
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 4.3e-06 56.2 262 23.7
MSTRG.5276 Avicennia marina HOM05D001755 ORTHO05D001665 5.7e-06 55.8 258 25.2
Oeu049222.1 Olea europaea HOM05D001755 ORTHO05D001665 7.4e-06 55.5 292 26.0
TAR381G1650 Trochodendron aralioides HOM05D001755 ORTHO05D001665 7.4e-06 55.5 246 23.6
Peaxi162Scf00160g01119 Petunia axillaris HOM05D001755 ORTHO05D001665 9.7e-06 55.1 244 23.4


User provided reference genes

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