Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05184 Davidia involucrata HOM05D003754 ORTHO05D004530 4.5e-166 587.8 287 100.0
Lj4A856T33 Lonicera japonica HOM05D003754 ORTHO05D004530 8.0e-131 470.7 266 88.3
Hma1.2p1_1882F.1_g306410 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 1.4e-130 469.9 270 86.3
Actinidia06664 Actinidia chinensis HOM05D003754 ORTHO05D004530 4.0e-130 468.4 269 85.9
Actinidia09819 Actinidia chinensis HOM05D003754 ORTHO05D004530 6.8e-130 467.6 264 86.7
DCAR_014347 Daucus carota HOM05D003754 ORTHO05D004530 2.6e-129 465.7 271 83.0
vmacro18661 Vaccinium macrocarpon HOM05D003754 ORTHO05D004530 1.7e-128 463.0 270 85.6
Hma1.2p1_0252F.1_g102755 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 4.9e-128 461.5 271 86.0
Hma1.2p1_0975F.1_g243110 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 9.2e-127 457.2 271 85.6
Gorai.003G069700 Gossypium raimondii HOM05D003754 ORTHO05D004530 3.5e-126 455.3 272 81.2
COL.COLO4_22427 Corchorus olitorius HOM05D003754 ORTHO05D004530 4.6e-126 454.9 272 81.6
CiPaw.03G124200 Carya illinoinensis HOM05D003754 ORTHO05D004530 7.8e-126 454.1 273 81.3
Gohir.D11G231200 Gossypium hirsutum HOM05D003754 ORTHO05D004530 7.8e-126 454.1 272 81.2
QL06p051895 Quercus lobata HOM05D003754 ORTHO05D004530 7.8e-126 454.1 273 81.7
Cfa002865 Carpinus fangiana HOM05D003754 ORTHO05D004530 2.3e-125 452.6 273 82.4
Gohir.A11G227533 Gossypium hirsutum HOM05D003754 ORTHO05D004530 3.9e-125 451.8 271 80.8
TWI79G1638 Tripterygium wilfordii HOM05D003754 ORTHO05D004530 8.6e-125 450.7 268 82.1
TAR625G1071 Trochodendron aralioides HOM05D003754 ORTHO05D004530 1.1e-124 450.3 269 80.3
Gorai.007G063500 Gossypium raimondii HOM05D003754 ORTHO05D004530 2.5e-124 449.1 271 80.4
PGR142G4345 Punica granatum HOM05D003754 ORTHO05D004530 4.3e-124 448.4 270 82.2
Dinv09929 Davidia involucrata HOM05D003754 ORTHO05D004530 7.3e-124 447.6 229 94.8
MD11G1021800 Malus domestica HOM05D003754 ORTHO05D004530 7.3e-124 447.6 271 81.5
Thecc.01G121700 Theobroma cacao HOM05D003754 ORTHO05D004530 7.3e-124 447.6 268 82.1
Nn7g38167 Nelumbo nucifera HOM05D003754 ORTHO05D004530 1.2e-123 446.8 269 80.7
Gohir.A11G054600 Gossypium hirsutum HOM05D003754 ORTHO05D004530 1.6e-123 446.4 271 80.4
Gohir.D11G058200 Gossypium hirsutum HOM05D003754 ORTHO05D004530 1.6e-123 446.4 271 80.1
Duzib264G0672 Durio zibethinus HOM05D003754 ORTHO05D004530 2.1e-123 446.0 272 82.0
Solyc03g115630.3 Solanum lycopersicum HOM05D003754 ORTHO05D004530 1.8e-122 443.0 266 82.0
GSVIVG01026584001 Vitis vinifera HOM05D003754 ORTHO05D004530 2.3e-122 442.6 268 81.0
MD03G1020600 Malus domestica HOM05D003754 ORTHO05D004530 3.1e-122 442.2 255 83.9
Potri.001G153400 Populus trichocarpa HOM05D003754 ORTHO05D004530 3.1e-122 442.2 271 80.4
PGSC0003DMG401024557 Solanum tuberosum HOM05D003754 ORTHO05D004530 4.0e-122 441.8 251 84.5
Potri.003G080900 Populus trichocarpa HOM05D003754 ORTHO05D004530 6.8e-122 441.0 261 83.1
EL10Ac4g10006 Beta vulgaris HOM05D003754 ORTHO05D004530 8.9e-122 440.7 268 79.9
Sopen03g034620 Solanum pennellii HOM05D003754 ORTHO05D004530 1.2e-121 440.3 266 81.6
MSTRG.2686 Avicennia marina HOM05D003754 ORTHO05D004530 2.6e-121 439.1 248 85.1
CAN.G479.50 Capsicum annuum HOM05D003754 ORTHO05D004530 3.4e-121 438.7 250 84.4
Cc07_g17390 Coffea canephora HOM05D003754 ORTHO05D004530 5.8e-121 438.0 259 83.8
Migut.H01123 Erythranthe guttata HOM05D003754 ORTHO05D004530 7.5e-121 437.6 248 85.1
FAN21G2117 Fragaria x ananassa HOM05D003754 ORTHO05D004530 7.5e-121 437.6 269 80.7
Phvul.009G147600 Phaseolus vulgaris HOM05D003754 ORTHO05D004530 7.5e-121 437.6 273 78.4
Prupe.6G163300 Prunus persica HOM05D003754 ORTHO05D004530 9.8e-121 437.2 271 80.4
SalBow5G2472 Salvia bowleyana HOM05D003754 ORTHO05D004530 9.8e-121 437.2 242 87.2
SalBow5G4447 Salvia bowleyana HOM05D003754 ORTHO05D004530 9.8e-121 437.2 242 87.2
Sed0005502 Sechium edule HOM05D003754 ORTHO05D004530 1.3e-120 436.8 274 79.9
FvH4_3g43670 Fragaria vesca HOM05D003754 ORTHO05D004530 2.2e-120 436.0 269 79.9
Sc25g0003300 Simmondsia chinensis HOM05D003754 ORTHO05D004530 2.2e-120 436.0 244 85.2
Eucgr.I00242 Eucalyptus grandis HOM05D003754 ORTHO05D004530 2.9e-120 435.6 270 81.5
VMungo1309G1400 Vigna mungo HOM05D003754 ORTHO05D004530 6.4e-120 434.5 274 78.1
ClCG11G013120 Citrullus lanatus HOM05D003754 ORTHO05D004530 8.3e-120 434.1 278 78.4
RcHm_v2.0_Chr5g0078331 Rosa chinensis HOM05D003754 ORTHO05D004530 8.3e-120 434.1 269 79.6
Atru.chr4.2901 Acer truncatum HOM05D003754 ORTHO05D004530 1.1e-119 433.7 272 78.7
CAN.G1241.25 Capsicum annuum HOM05D003754 ORTHO05D004530 1.1e-119 433.7 249 83.9
FAN11G0854 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.1e-119 433.7 259 81.5
FAN25G1759 Fragaria x ananassa HOM05D003754 ORTHO05D004530 1.4e-119 433.3 269 79.9
Nitab4.5_0000540g0290 Nicotiana tabacum HOM05D003754 ORTHO05D004530 1.4e-119 433.3 272 80.9
MELO3C011808.2 Cucumis melo HOM05D003754 ORTHO05D004530 3.2e-119 432.2 278 77.7
Lsat_1_v5_gn_2_115701 Lactuca sativa HOM05D003754 ORTHO05D004530 3.2e-119 432.2 269 79.2
Oeu037781.1 Olea europaea HOM05D003754 ORTHO05D004530 3.2e-119 432.2 246 84.6
RcHm_v2.0_Chr2g0150151 Rosa chinensis HOM05D003754 ORTHO05D004530 7.0e-119 431.0 268 79.9
CANSAT01G2639 Cannabis sativa HOM05D003754 ORTHO05D004530 9.2e-119 430.6 255 82.4
MBI07_g22390_MAGBIO Magnolia biondii HOM05D003754 ORTHO05D004530 9.2e-119 430.6 268 77.2
Sabra03G0052100 Salix brachista HOM05D003754 ORTHO05D004530 1.2e-118 430.3 261 81.6
AUR62017270 Chenopodium quinoa HOM05D003754 ORTHO05D004530 1.6e-118 429.9 270 77.8
Sed0000423 Sechium edule HOM05D003754 ORTHO05D004530 2.1e-118 429.5 245 84.1
Ah.15g092910 Amaranthus hybridus HOM05D003754 ORTHO05D004530 2.7e-118 429.1 248 82.3
CsaV3_5G029640 Cucumis sativus L. HOM05D003754 ORTHO05D004530 3.5e-118 428.7 278 77.0
Hund00470 Selenicereus undatus HOM05D003754 ORTHO05D004530 3.5e-118 428.7 268 77.6
EL10Ac7g16883 Beta vulgaris HOM05D003754 ORTHO05D004530 4.6e-118 428.3 263 80.6
Cpa.g.sc42.92 Carica papaya HOM05D003754 ORTHO05D004530 4.6e-118 428.3 268 78.0
PGSC0003DMG400000337 Solanum tuberosum HOM05D003754 ORTHO05D004530 4.6e-118 428.3 262 79.8
Haze_25183 Corylus avellana HOM05D003754 ORTHO05D004530 6.0e-118 427.9 315 70.2
HanXRQChr05g0132711 Helianthus annuus HOM05D003754 ORTHO05D004530 6.0e-118 427.9 268 79.1
Lalb_Chr13g0296421 Lupinus albus HOM05D003754 ORTHO05D004530 6.0e-118 427.9 272 77.6
TPR.G3506 Trifolium pratense HOM05D003754 ORTHO05D004530 1.3e-117 426.8 272 76.8
FAN16G1056 Fragaria x ananassa HOM05D003754 ORTHO05D004530 2.3e-117 426.0 269 78.8
Manes.13G086500 Manihot esculenta HOM05D003754 ORTHO05D004530 3.0e-117 425.6 245 84.1
Ciclev10025660m.g Citrus clementina HOM05D003754 ORTHO05D004530 3.9e-117 425.2 272 77.2
TPR.G18713 Trifolium pratense HOM05D003754 ORTHO05D004530 3.9e-117 425.2 272 76.5
AUR62010627 Chenopodium quinoa HOM05D003754 ORTHO05D004530 6.6e-117 424.5 270 77.4
ECA246G0381 Erigeron canadensis HOM05D003754 ORTHO05D004530 8.6e-117 424.1 268 79.9
Glyma.06G150000 Glycine max HOM05D003754 ORTHO05D004530 1.9e-116 422.9 273 77.7
SGA_v2.0_scaffold47G17755 Striga asiatica HOM05D003754 ORTHO05D004530 1.9e-116 422.9 269 79.2
Prupe.6G016000 Prunus persica HOM05D003754 ORTHO05D004530 2.5e-116 422.5 256 81.6
Medtr4g103830 Medicago truncatula HOM05D003754 ORTHO05D004530 3.3e-116 422.2 272 75.7
CDE02G3666 Ceratophyllum demersum HOM05D003754 ORTHO05D004530 7.3e-116 421.0 248 80.2
Ca_16915_v3 Cicer arietinum L. HOM05D003754 ORTHO05D004530 9.5e-116 420.6 273 74.7
Lalb_Chr12g0203311 Lupinus albus HOM05D003754 ORTHO05D004530 1.6e-115 419.9 272 76.1
Peaxi162Scf00498g00315 Petunia axillaris HOM05D003754 ORTHO05D004530 3.6e-115 418.7 221 90.5
Lj1g0021659 Lotus japonicus HOM05D003754 ORTHO05D004530 6.2e-115 417.9 273 76.2
Glyma.04G216000 Glycine max HOM05D003754 ORTHO05D004530 8.1e-115 417.5 273 76.9
FvH4_5g29030 Fragaria vesca HOM05D003754 ORTHO05D004530 1.8e-114 416.4 269 77.0
Glyma.05G188500 Glycine max HOM05D003754 ORTHO05D004530 1.8e-114 416.4 269 77.7
FAN13G0594 Fragaria x ananassa HOM05D003754 ORTHO05D004530 3.1e-114 415.6 269 77.0
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 8.9e-114 414.1 244 81.6
C02p26550 Brassica napus HOM05D003754 ORTHO05D004530 1.2e-113 413.7 257 76.7
arahy.Tifrunner.gnm1.ann1.IAY1GN Arachis hypogaea HOM05D003754 ORTHO05D004530 1.5e-113 413.3 275 74.9
BcaC03g15094 Brassica carinata HOM05D003754 ORTHO05D004530 1.5e-113 413.3 257 76.7
Psat5g063800 Pisum sativum HOM05D003754 ORTHO05D004530 2.6e-113 412.5 272 74.3
A02p15970 Brassica napus HOM05D003754 ORTHO05D004530 5.8e-113 411.4 257 75.9
Oeu047648.2 Olea europaea HOM05D003754 ORTHO05D004530 5.8e-113 411.4 296 70.9
THA.LOC104820363 Tarenaya hassleriana HOM05D003754 ORTHO05D004530 5.8e-113 411.4 256 78.5
HanXRQChr16g0507191 Helianthus annuus HOM05D003754 ORTHO05D004530 9.9e-113 410.6 269 76.6
BraA07t31175Z Brassica rapa HOM05D003754 ORTHO05D004530 1.7e-112 409.8 260 76.2
A07p35920 Brassica napus HOM05D003754 ORTHO05D004530 2.2e-112 409.5 260 76.2
VMungo0251G2586 Vigna mungo HOM05D003754 ORTHO05D004530 2.9e-112 409.1 258 78.7
BolC2t08726H Brassica oleracea HOM05D003754 ORTHO05D004530 3.7e-112 408.7 264 75.0
Thhalv10018601m.g Eutrema salsugineum HOM05D003754 ORTHO05D004530 4.9e-112 408.3 260 75.8
BolC6t39404H Brassica oleracea HOM05D003754 ORTHO05D004530 6.4e-112 407.9 260 75.8
FAN18G2098 Fragaria x ananassa HOM05D003754 ORTHO05D004530 6.4e-112 407.9 286 72.0
BcaB03g14725 Brassica carinata HOM05D003754 ORTHO05D004530 8.3e-112 407.5 271 74.2
BcaC08g46397 Brassica carinata HOM05D003754 ORTHO05D004530 8.3e-112 407.5 260 75.4
C06p43290 Brassica napus HOM05D003754 ORTHO05D004530 8.3e-112 407.5 260 75.4
arahy.Tifrunner.gnm1.ann1.H83BDD Arachis hypogaea HOM05D003754 ORTHO05D004530 1.4e-111 406.8 275 73.8
BraA02t06656Z Brassica rapa HOM05D003754 ORTHO05D004530 1.4e-111 406.8 264 74.2
Sp5g24680 Schrenkiella parvula HOM05D003754 ORTHO05D004530 1.9e-111 406.4 260 75.4
BcaB05g24461 Brassica carinata HOM05D003754 ORTHO05D004530 2.4e-111 406.0 252 75.8
CARHR038270 Cardamine hirsuta HOM05D003754 ORTHO05D004530 2.1e-110 402.9 244 79.5
CDE09G1207 Ceratophyllum demersum HOM05D003754 ORTHO05D004530 4.6e-110 401.7 226 84.5
PSO170G5654 Papaver somniferum HOM05D003754 ORTHO05D004530 6.0e-110 401.4 248 78.6
Medtr3g095490 Medicago truncatula HOM05D003754 ORTHO05D004530 1.0e-109 400.6 262 74.8
PSO675G1326 Papaver somniferum HOM05D003754 ORTHO05D004530 1.3e-109 400.2 248 76.6
PSO017G1739 Papaver somniferum HOM05D003754 ORTHO05D004530 3.3e-108 395.6 248 76.6
Carub.0005s0630 Capsella rubella HOM05D003754 ORTHO05D004530 5.6e-108 394.8 268 70.5
AT3G27740 Arabidopsis thaliana HOM05D003754 ORTHO05D004530 1.6e-107 393.3 272 70.6
HPP92_024510 Vanilla planifolia HOM05D003754 ORTHO05D004530 2.1e-107 392.9 255 74.9
Sabra01G0123200 Salix brachista HOM05D003754 ORTHO05D004530 2.8e-107 392.5 369 58.5
AL5G17190 Arabidopsis lyrata HOM05D003754 ORTHO05D004530 4.7e-107 391.7 272 70.2
ATR0787G147 Amborella trichopoda HOM05D003754 ORTHO05D004530 6.2e-107 391.3 238 79.0
Zm00001eb252240 Zea mays HOM05D003754 ORTHO05D004530 3.1e-106 389.0 255 72.9
PSO063G2422 Papaver somniferum HOM05D003754 ORTHO05D004530 5.2e-106 388.3 248 77.4
HPP92_024507 Vanilla planifolia HOM05D003754 ORTHO05D004530 6.8e-106 387.9 221 82.8
Os02g0708100 Oryza sativa ssp. japonica HOM05D003754 ORTHO05D004530 8.9e-106 387.5 237 77.6
Nitab4.5_0008523g0020 Nicotiana tabacum HOM05D003754 ORTHO05D004530 5.8e-105 384.8 313 67.7
unitig_699.g19714 Utricularia gibba HOM05D003754 ORTHO05D004530 5.8e-105 384.8 261 72.4
Zm00001eb188530 Zea mays HOM05D003754 ORTHO05D004530 1.3e-104 383.6 255 73.3
Aqoxy1G00632 Aquilegia oxysepala HOM05D003754 ORTHO05D004530 2.4e-103 379.4 250 73.6
Aqoxy5G02121 Aquilegia oxysepala HOM05D003754 ORTHO05D004530 1.2e-102 377.1 280 67.9
MD15G1342500 Malus domestica HOM05D003754 ORTHO05D004530 3.6e-99 365.5 269 69.5
AagrBONN_evm.TU.Sc2ySwM_117.1845 Anthoceros agrestis HOM05D003754 ORTHO05D004530 1.7e-96 356.7 231 73.2
Pp3c7_8810 Physcomitrium patens HOM05D003754 ORTHO05D004530 8.4e-96 354.4 240 69.2
Duzib187G1293 Durio zibethinus HOM05D003754 ORTHO05D004530 1.9e-95 353.2 271 67.5
Mapoly0008s0155 Marchantia polymorpha HOM05D003754 ORTHO05D004530 7.8e-94 347.8 239 67.8
Atru.chr4.649 Acer truncatum HOM05D003754 ORTHO05D004530 3.3e-92 342.4 272 68.0
CSS0004755 Camellia sinensis var. sinensis HOM05D003754 ORTHO05D004530 7.3e-92 341.3 176 93.2
Pp3c11_11760 Physcomitrium patens HOM05D003754 ORTHO05D004530 1.4e-90 337.0 240 66.2
Peaxi162Scf00025g02016 Petunia axillaris HOM05D003754 ORTHO05D004530 4.3e-84 315.5 251 67.7
SMO164G0151 Selaginella moellendorffii HOM05D003754 ORTHO05D004530 3.7e-83 312.4 267 58.8
FAN08G0734 Fragaria x ananassa HOM05D003754 ORTHO05D004530 4.2e-79 298.9 196 76.0
MCO05G701 Micromonas commoda HOM05D003754 ORTHO05D004530 1.0e-77 294.3 272 51.8
CBR_g8394 Chara braunii HOM05D003754 ORTHO05D004530 8.4e-72 274.6 280 51.8
Duzib187G0686 Durio zibethinus HOM05D003754 ORTHO05D004530 1.1e-71 274.2 150 87.3
Cre06.g308500 Chlamydomonas reinhardtii HOM05D003754 ORTHO05D004530 1.2e-70 270.8 223 56.1
QL10p011683 Quercus lobata HOM05D003754 ORTHO05D004530 3.0e-69 266.2 154 83.8
PRCOL_00005740 Prasinoderma coloniale HOM05D003754 ORTHO05D004530 6.7e-69 265.0 212 59.0
SGA_v2.0_scaffold34G13603 Striga asiatica HOM05D003754 ORTHO05D004530 1.6e-67 260.4 234 63.2
SMO292G0005 Selaginella moellendorffii HOM05D003754 ORTHO05D004530 7.7e-65 251.5 266 48.9
SEGI_05555 Sequoiadendron giganteum HOM05D003754 ORTHO05D004530 1.1e-63 247.7 163 69.9
vmacro21315 Vaccinium macrocarpon HOM05D003754 ORTHO05D004530 2.6e-44 183.3 95 94.7
arahy.Tifrunner.gnm1.ann1.JRXR5K Arachis hypogaea HOM05D003754 ORTHO05D004530 9.7e-44 181.4 206 51.9
arahy.Tifrunner.gnm1.ann1.2GFV1T Arachis hypogaea HOM05D003754 ORTHO05D004530 7.7e-41 171.8 128 69.5
Nn5g28719 Nelumbo nucifera HOM05D003754 ORTHO05D004530 8.5e-40 168.3 243 46.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.6e-38 162.9 216 41.2
arahy.Tifrunner.gnm1.ann1.RLN2F0 Arachis hypogaea HOM05D003754 ORTHO05D004530 2.2e-35 153.7 130 61.5
Haze_27195 Corylus avellana HOM05D003754 ORTHO05D004530 2.2e-35 153.7 226 38.1
Haze_27203 Corylus avellana HOM05D003754 ORTHO05D004530 9.4e-31 138.3 222 36.5
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 2.8e-27 126.7 84 70.2
CSS0003432 Camellia sinensis var. sinensis HOM05D003754 ORTHO05D004530 1.2e-25 121.3 89 69.7
Nitab4.5_0002388g0110 Nicotiana tabacum HOM05D003754 ORTHO05D004530 1.2e-25 121.3 138 52.2
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 2.5e-23 113.6 243 30.0
Sed0026112 Sechium edule HOM05D003754 ORTHO05D004530 2.1e-22 110.5 95 67.4
arahy.Tifrunner.gnm1.ann1.KN16SD Arachis hypogaea HOM05D003754 ORTHO05D004530 2.3e-21 107.1 110 56.4
SEGI_39075 Sequoiadendron giganteum HOM05D003754 ORTHO05D004530 3.5e-17 93.2 90 55.6
Sopen10g006850 Solanum pennellii HOM05D003754 ORTHO05D004530 7.0e-10 68.9 44 79.5


User provided reference genes

Program Settings