Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.4e-198 695.3 347 100.0
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.4e-177 625.5 347 89.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.5e-176 622.9 347 89.9
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.6e-176 620.5 344 89.0
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.2e-173 613.2 348 87.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 9.6e-171 603.6 345 87.0
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.8e-170 602.1 347 85.3
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.8e-170 601.3 347 85.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 4.8e-170 601.3 347 85.3
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.1e-169 600.1 348 84.5
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.1e-169 598.6 346 85.8
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 4.0e-169 598.2 346 85.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 5.3e-169 597.8 347 86.5
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.4e-168 595.1 351 84.9
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.5e-168 594.7 347 84.7
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 5.8e-168 594.3 345 85.2
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.8e-168 594.3 346 85.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 7.6e-168 594.0 347 83.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 9.9e-168 593.6 342 86.0
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 9.9e-168 593.6 348 84.8
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.7e-167 592.8 347 85.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.2e-167 592.4 345 86.1
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 8.4e-167 590.5 347 83.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 8.4e-167 590.5 345 85.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.2e-166 588.6 347 83.9
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.2e-166 588.6 347 83.9
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.4e-166 587.8 345 83.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.7e-165 585.5 347 84.4
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 4.6e-165 584.7 378 79.4
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.3e-163 578.6 351 81.2
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 7.4e-163 577.4 351 82.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.8e-162 574.7 351 80.3
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 6.2e-162 574.3 348 82.8
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.4e-161 573.2 353 80.7
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 5.3e-161 571.2 358 81.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 5.3e-161 571.2 349 81.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.0e-160 569.3 357 80.4
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.0e-160 569.3 355 80.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 3.4e-160 568.5 326 85.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 5.8e-160 567.8 346 81.5
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.3e-159 566.6 351 80.6
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.8e-159 565.1 349 79.9
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.8e-159 565.1 327 86.5
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.8e-159 565.1 348 82.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 8.4e-159 563.9 345 80.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 8.4e-159 563.9 360 78.3
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.5e-158 562.4 348 81.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.2e-158 561.6 323 86.7
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 7.1e-158 560.8 350 80.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.1e-157 559.3 349 81.4
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.5e-157 558.5 349 81.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.5e-157 558.5 350 80.3
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.6e-157 558.1 347 80.7
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.3e-156 556.6 348 80.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.5e-155 553.1 347 79.5
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.9e-155 552.7 347 80.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.5e-155 552.4 352 79.0
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 6.2e-154 547.7 352 76.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.3e-151 540.0 351 76.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-151 540.0 333 80.5
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.2e-151 539.3 327 82.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.8e-151 538.5 326 81.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.5e-150 535.8 347 77.2
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-149 533.5 324 80.2
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.1e-149 532.7 324 81.2
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.1e-149 532.7 402 69.4
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.0e-148 530.4 345 77.7
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.0e-148 530.4 306 86.3
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.8e-148 529.6 322 80.1
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.1e-148 528.1 354 75.4
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 5.1e-148 528.1 378 71.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 5.1e-148 528.1 347 76.4
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.5e-147 526.6 350 76.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-147 526.6 348 77.3
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.9e-147 526.2 347 77.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.5e-147 525.8 347 75.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.6e-146 523.1 348 76.7
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.6e-146 523.1 349 75.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.2e-146 522.7 353 75.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 6.3e-146 521.2 328 78.4
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 8.2e-146 520.8 324 80.2
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.8e-145 519.6 348 75.6
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.4e-145 519.2 325 78.2
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 9.0e-145 517.3 325 76.6
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.9e-143 512.3 345 75.7
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.9e-142 509.6 325 75.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 5.5e-142 508.1 341 77.4
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.0e-140 503.8 325 75.7
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.4e-140 503.4 324 75.3
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.8e-140 503.1 342 75.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.3e-140 502.7 326 76.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-139 500.4 325 76.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.3e-139 498.4 341 73.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.8e-138 495.7 360 71.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.3e-138 494.6 326 75.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-137 493.8 329 76.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.4e-137 493.4 326 73.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.8e-137 493.0 317 77.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.4e-137 492.7 322 74.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.4e-137 492.7 333 72.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 4.1e-137 491.9 323 74.9
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.2e-136 490.3 322 74.5
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.0e-136 489.6 319 75.2
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.0e-136 489.6 319 74.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.4e-136 488.8 322 73.9
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 3.4e-136 488.8 323 74.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 7.7e-136 487.6 323 74.3
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 7.7e-136 487.6 335 71.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.9e-135 485.7 351 68.9
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 6.5e-135 484.6 323 73.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 8.5e-135 484.2 323 73.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 8.5e-135 484.2 326 73.6
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.9e-134 483.0 322 73.6
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.2e-134 481.9 348 71.8
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.5e-134 481.5 311 76.8
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.0e-132 477.2 354 68.9
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.4e-132 476.9 305 78.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 8.8e-132 474.2 317 74.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-131 473.8 265 87.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.3e-131 472.2 322 73.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 4.4e-131 471.9 272 87.5
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.7e-131 471.5 312 75.3
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.3e-130 470.3 324 71.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 8.2e-130 467.6 331 69.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.0e-129 464.5 345 66.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.3e-127 460.3 347 69.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 5.0e-127 458.4 327 71.3
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.7e-125 452.6 524 49.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.3e-123 445.7 283 80.6
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.1e-121 438.7 265 83.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-110 404.1 325 65.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.9e-102 376.7 351 56.1
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.2e-102 375.6 232 80.6
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 3.6e-101 372.5 338 56.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.5e-96 355.9 280 67.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.9e-95 352.8 242 70.7
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.4e-92 344.0 206 83.0
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.0e-91 340.1 228 74.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 8.3e-90 334.7 288 59.0
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 7.0e-89 331.6 267 66.3
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.7e-87 327.0 203 80.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 5.2e-84 315.5 228 71.1
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.9e-84 314.7 188 84.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-75 287.7 163 87.7
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 3.1e-68 263.1 374 41.7
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 5.4e-65 252.3 186 67.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.1e-64 250.4 185 70.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 6.0e-64 248.8 212 62.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.6e-63 245.4 165 74.5
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 7.3e-62 241.9 161 74.5
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.2e-58 230.3 142 78.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.9e-54 217.2 269 48.7
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.2e-49 199.9 193 57.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 5.4e-49 199.1 329 41.3
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.7e-40 170.2 112 75.9
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.1e-33 145.6 151 51.0
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 8.2e-29 132.1 381 32.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.1e-28 130.2 298 33.9
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.5e-27 127.9 71 90.1
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 5.9e-27 125.9 294 32.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.9e-23 113.2 206 37.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.3e-22 110.2 63 79.4
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.3e-22 109.8 63 79.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.4e-19 100.1 57 82.5
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.5e-18 95.9 60 81.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 6.5e-18 95.9 91 54.9
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 2.8e-13 80.5 77 53.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 8.5e-10 68.9 49 63.3
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 4.7e-08 63.2 57 57.9
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 2.3e-07 60.8 35 77.1


User provided reference genes

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