Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 0.0e+00 1174.5 576 100.0
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 4.0e-307 1057.4 572 90.2
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 4.2e-304 1047.3 571 88.8
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 2.3e-302 1041.6 571 88.1
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.1e-301 1039.3 572 87.8
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.5e-301 1038.9 572 87.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 3.7e-300 1034.2 572 88.1
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 9.9e-298 1026.2 573 86.7
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 9.9e-298 1026.2 603 83.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.3e-297 1025.8 576 85.9
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 6.4e-297 1023.5 595 84.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.1e-296 1022.7 576 85.8
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 5.5e-296 1020.4 576 85.4
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 3.5e-295 1017.7 569 85.4
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.6e-295 1017.3 569 85.4
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 7.9e-295 1016.5 569 85.4
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-294 1015.8 569 85.4
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-294 1015.8 569 85.4
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.3e-294 1015.8 575 86.3
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.3e-294 1015.8 575 84.2
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.8e-294 1015.4 575 84.5
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 572 85.8
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 572 85.1
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 3.0e-294 1014.6 573 86.2
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 3.9e-294 1014.2 573 86.2
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 3.9e-294 1014.2 569 85.6
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 8.7e-294 1013.1 569 86.5
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.1e-293 1012.7 569 85.4
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 2.5e-293 1011.5 573 84.3
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 577 85.4
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 3.3e-293 1011.1 575 83.5
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 569 85.2
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 573 84.3
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.3e-292 1009.2 572 85.1
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 2.1e-292 1008.4 572 85.0
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.7e-292 1007.7 573 83.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.4e-291 1005.7 558 86.4
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.4e-291 1005.7 572 84.6
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.4e-291 1005.0 567 84.5
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.0e-291 1004.2 573 83.8
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 9.0e-291 1003.0 571 83.9
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 572 83.2
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.6e-290 1001.5 571 83.4
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.4e-290 1001.1 574 84.1
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.7e-289 998.8 572 84.3
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 2.9e-289 998.0 555 86.5
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.4e-288 995.7 572 84.4
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 1.4e-288 995.7 571 84.4
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.5e-288 995.0 564 84.6
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 5.5e-288 993.8 554 85.6
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 9.3e-288 993.0 563 84.4
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 7.9e-287 989.9 563 84.2
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 3.0e-286 988.0 575 83.5
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 3.0e-286 988.0 576 83.2
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 6.7e-286 986.9 562 84.7
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.3e-285 984.2 563 84.0
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 5.7e-285 983.8 576 82.8
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.4e-285 983.4 551 84.9
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.6e-284 982.2 551 84.8
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.6e-282 974.9 572 82.3
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 7.6e-282 973.4 573 81.8
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 6.5e-281 970.3 579 81.0
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.6e-279 965.7 573 82.0
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.6e-279 964.5 547 83.5
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 4.6e-279 964.1 548 83.9
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 6.1e-279 963.8 551 82.8
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 6.1e-279 963.8 573 81.8
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.3e-278 961.8 547 83.4
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-277 959.5 551 83.5
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.5e-277 958.4 538 86.6
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 7.4e-277 956.8 548 83.4
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 6.3e-276 953.7 548 83.8
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 8.2e-276 953.4 551 82.0
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 8.2e-276 953.4 551 82.2
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.4e-275 952.6 547 82.4
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.4e-275 952.6 563 80.5
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 6.9e-275 950.3 563 81.2
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 2.6e-274 948.3 547 82.4
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 5.9e-274 947.2 551 81.9
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 5.9e-274 947.2 564 80.1
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 5.9e-274 947.2 563 80.1
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 2.9e-273 944.9 547 81.5
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.1e-272 943.0 547 82.1
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.5e-272 941.8 551 81.5
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 3.2e-272 941.4 569 79.1
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 4.2e-272 941.0 554 83.8
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 4.7e-271 937.6 575 78.3
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 6.7e-270 933.7 549 81.4
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 3.3e-269 931.4 572 80.9
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.4e-269 930.2 575 77.9
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.3e-268 929.5 564 80.1
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.7e-268 929.1 555 80.2
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.7e-268 929.1 552 81.0
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 3.7e-268 927.9 571 79.0
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 5.0e-265 917.5 572 80.1
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 9.4e-264 913.3 577 76.9
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.2e-258 896.3 572 76.4
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 6.1e-255 884.0 568 77.5
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 6.1e-255 884.0 454 95.2
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 3.0e-254 881.7 564 78.0
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.2e-253 879.8 551 76.4
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.5e-253 879.4 564 75.7
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 3.3e-253 878.2 550 74.7
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 9.7e-253 876.7 565 75.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.3e-249 866.3 499 83.8
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.2e-249 865.5 544 76.1
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.8e-249 864.8 544 75.9
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 8.3e-244 847.0 570 76.3
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 9.1e-243 843.6 558 73.8
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 4.0e-238 828.2 572 73.1
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.2e-237 826.6 557 71.3
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.6e-231 806.2 511 76.5
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 2.7e-226 788.9 543 69.8
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 3.5e-226 788.5 560 66.4
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.5e-224 783.1 426 89.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.1e-222 776.9 547 67.3
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 6.8e-222 774.2 427 88.1
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.3e-216 755.0 537 68.0
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 6.6e-209 731.1 541 65.6
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.5e-208 729.2 542 64.8
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 2.8e-207 725.7 609 64.9
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.6e-202 708.4 542 66.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.6e-202 708.4 542 66.1
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.5e-168 596.3 572 59.1
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.7e-164 583.6 336 83.9
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 9.4e-163 577.8 328 85.4
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 6.7e-145 518.5 552 49.6
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-142 511.1 292 84.2
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.8e-134 483.8 311 77.2
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 6.5e-132 475.3 324 71.9
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.4e-126 457.6 355 68.2
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 5.4e-102 375.9 199 89.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.4e-88 330.1 506 43.5
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.7e-71 274.6 336 44.9
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.7e-69 267.3 186 66.7
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 2.7e-61 240.7 140 84.3
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.8e-57 228.0 134 82.8
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-54 217.6 131 78.6
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.3e-50 205.3 109 80.7
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.2e-46 190.7 132 70.5
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 3.6e-45 187.2 128 69.5
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.0e-44 185.7 140 64.3
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.0e-44 184.1 119 73.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 2.0e-43 181.4 95 85.3
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.7e-42 177.2 130 65.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.7e-42 177.2 130 65.4
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 5.0e-39 166.8 119 65.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 5.0e-39 166.8 119 65.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 2.7e-37 161.0 122 63.1
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 2.7e-37 161.0 122 63.1
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 7.4e-35 152.9 76 89.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 2.8e-26 124.4 83 73.5
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 3.5e-24 117.5 189 41.8
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.9e-24 116.7 86 66.3
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 2.2e-23 114.8 118 46.6
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.5e-22 111.3 121 48.8
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 5.7e-19 100.1 61 77.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 5.9e-16 90.1 58 70.7


User provided reference genes

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