Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 2357.0 1405 100.0
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1509.2 1482 65.7
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 0.0e+00 1360.9 1518 60.1
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1357.8 1415 65.0
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1347.8 1428 64.9
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1333.2 1504 60.6
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 0.0e+00 1323.9 1429 61.0
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1317.0 1451 60.3
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1316.6 1423 60.7
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1294.3 1423 61.2
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1280.4 1379 59.7
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1261.1 1358 62.1
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1260.0 1423 59.5
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 0.0e+00 1259.6 1417 61.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1253.4 1453 59.0
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1246.5 1461 57.5
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 0.0e+00 1243.8 1417 58.6
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 0.0e+00 1241.9 1442 60.1
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 0.0e+00 1233.0 1438 59.4
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 1228.8 1422 59.2
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1228.8 1423 59.3
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1227.6 1445 59.0
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1218.4 1422 58.4
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1216.4 1492 55.2
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1214.5 1438 58.6
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1205.7 1422 57.7
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1203.0 1447 58.4
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 0.0e+00 1201.8 1446 56.9
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 0.0e+00 1191.8 1426 60.3
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 0.0e+00 1186.0 1432 58.9
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 0.0e+00 1181.0 1428 59.3
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 0.0e+00 1167.1 1438 54.7
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 0.0e+00 1151.7 1522 54.1
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 0.0e+00 1138.6 1512 53.5
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 0.0e+00 1136.7 1482 54.3
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 1131.3 1482 54.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 0.0e+00 1126.3 1434 58.5
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 0.0e+00 1125.9 1481 52.1
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 0.0e+00 1117.8 1469 54.5
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 0.0e+00 1104.7 1447 52.9
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 0.0e+00 1102.0 1413 54.1
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 0.0e+00 1099.3 1471 53.2
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1093.6 1444 54.9
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 0.0e+00 1086.6 1410 54.5
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 0.0e+00 1084.3 1416 52.0
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 0.0e+00 1080.1 1420 52.7
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 0.0e+00 1076.2 1535 53.1
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 0.0e+00 1075.5 1473 53.8
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 6.7e-311 1071.2 1443 53.7
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.3e-310 1068.9 1246 59.1
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 1.5e-307 1060.1 1494 53.7
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 4.4e-307 1058.5 1475 50.8
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.4e-305 1053.5 1493 51.6
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 3.5e-304 1048.9 1529 50.4
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 4.7e-301 1038.5 1439 55.0
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 9.8e-299 1030.8 1435 52.8
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.9e-298 1029.2 1504 49.7
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 9.2e-297 1024.2 1339 52.7
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.2e-293 1013.8 1507 50.1
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 4.4e-291 1005.4 1436 52.4
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 5.4e-289 998.4 1411 49.3
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 6.6e-287 991.5 1461 54.2
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 3.6e-285 985.7 1423 52.6
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 5.2e-284 981.9 1431 51.6
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 9.9e-283 977.6 1480 49.7
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 4.6e-280 968.8 1443 51.2
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 1.3e-279 967.2 1426 50.6
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 2.7e-272 943.0 1238 52.5
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 9.6e-270 934.5 1696 46.2
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.2e-266 923.3 1449 48.5
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 5.5e-265 918.7 1455 49.6
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 3.0e-263 912.9 1508 46.4
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.5e-262 910.6 1236 51.8
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 7.1e-257 891.7 720 70.6
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 9.3e-257 891.3 1477 47.8
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 3.5e-256 889.4 1463 49.1
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 3.8e-250 869.4 1506 45.9
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 6.5e-250 868.6 1541 46.9
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 1.4e-249 867.5 1426 47.3
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.6e-248 864.0 1393 48.1
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 3.4e-243 846.3 1479 50.4
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 3.0e-239 833.2 1478 49.0
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 2.2e-237 827.0 1492 44.8
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 7.7e-235 818.5 1409 48.6
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.8e-228 797.3 1061 50.8
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 5.3e-228 795.8 1451 48.4
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.0e-226 791.6 1459 48.4
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 6.7e-223 778.9 1440 47.4
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 6.7e-223 778.9 1440 47.4
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.2e-221 773.9 1459 47.7
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 4.8e-221 772.7 1486 46.8
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 4.1e-220 769.6 1459 44.5
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 7.7e-211 738.8 1475 42.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 1.3e-202 711.4 1454 41.6
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.6e-200 704.5 1466 43.0
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 6.1e-200 702.6 1439 41.7
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.9e-182 642.1 583 68.4
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 7.8e-179 632.5 1284 42.1
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 6.0e-171 606.3 1214 37.8
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 8.4e-165 585.9 1424 36.0
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.0e-154 552.4 613 55.0
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 2.5e-153 547.7 1245 39.7
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 7.4e-153 546.2 1526 37.4
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 1.3e-149 535.4 770 48.1
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 5.1e-146 523.5 808 54.2
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 2.9e-133 481.1 1501 37.0
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 5.9e-126 456.8 1308 34.7
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 9.8e-89 333.2 1448 31.8
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 7.5e-81 307.0 259 67.6
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.2e-71 275.0 1493 26.3
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 1.2e-70 273.1 329 61.7
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 8.1e-59 233.8 1148 27.3
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.1e-58 233.4 1522 25.4
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 5.8e-57 227.6 335 39.4
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 8.4e-56 223.8 1486 25.7
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 6.6e-53 214.2 1435 24.7
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 8.4e-48 197.2 296 54.7
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 2.3e-45 189.1 376 45.5
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 7.6e-41 174.1 171 54.4
Actinidia04098 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.1e-38 166.0 241 49.8
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 3.0e-37 162.2 328 40.2
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 6.7e-37 161.0 335 41.2
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 8.7e-37 160.6 140 68.6
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 5.6e-36 157.9 92 77.2
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.4e-34 153.3 481 40.5
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.9e-32 145.6 395 37.2
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 9.6e-28 130.6 276 46.4
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 2.8e-27 129.0 162 55.6
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 2.8e-27 129.0 122 58.2
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 2.5e-23 115.9 64 89.1
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 7.1e-23 114.4 344 40.1
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 6.1e-22 111.3 134 50.7
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 7.4e-20 104.4 64 75.0
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.2e-19 102.8 69 72.5
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 6.3e-19 101.3 301 37.9
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 4.5e-17 95.1 61 73.8
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 9.4e-15 87.4 108 52.8
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 1.4e-13 83.6 270 33.7
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.3e-13 82.8 50 74.0
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 8.8e-13 80.9 154 37.0
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.1e-12 80.5 50 70.0
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 4.3e-12 78.6 95 55.8
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.1e-10 73.9 313 23.3
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-10 73.6 76 48.7
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 9.1e-10 70.9 103 40.8
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 9.1e-10 70.9 64 57.8
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 7.7e-09 67.8 52 61.5
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 1.0e-08 67.4 89 48.3
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 1.1e-07 63.9 54 59.3
BcaB07g33689 Brassica carinata HOM05D004594 ORTHO05D021612 7.2e-07 61.2 69 47.8
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 9.4e-07 60.8 81 44.4
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 1.2e-06 60.5 55 52.7


User provided reference genes

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