Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 3.6e-154 548.1 263 100.0
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.3e-124 449.9 264 81.4
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.5e-115 419.9 263 76.0
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.3e-114 416.8 263 74.5
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.6e-109 398.3 261 72.4
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.1e-105 387.1 263 70.0
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 3.6e-101 372.1 263 68.8
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 7.9e-101 370.9 263 67.7
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 7.9e-101 370.9 192 92.2
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 8.8e-100 367.5 253 69.2
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 2.0e-96 356.3 263 66.2
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 4.7e-93 345.1 264 64.8
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.3e-92 342.8 268 60.4
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.5e-91 340.1 267 61.8
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 4.4e-91 338.6 252 62.7
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 7.4e-91 337.8 268 60.4
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.3e-90 337.0 252 64.3
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.8e-90 335.9 252 65.1
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 8.2e-90 334.3 259 64.9
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.2e-90 334.3 265 62.3
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 1.1e-89 334.0 265 60.0
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-89 333.2 265 61.9
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.4e-89 332.8 253 60.9
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 2.4e-89 332.8 267 64.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 2.4e-89 332.8 267 64.8
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 3.1e-89 332.4 261 60.5
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.6e-88 330.1 268 60.4
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.6e-88 330.1 265 60.4
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.6e-88 329.3 265 60.8
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 2.6e-88 329.3 268 59.3
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.6e-88 329.3 266 60.9
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.6e-88 329.3 265 61.5
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 2.2e-87 326.2 265 60.0
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.9e-87 325.9 199 76.4
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.9e-87 325.9 267 62.2
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.1e-86 323.9 267 59.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.5e-86 321.6 232 65.9
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 7.2e-86 321.2 265 59.6
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 9.4e-86 320.9 266 58.6
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.2e-85 320.5 260 57.3
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.2e-85 320.5 272 60.3
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 2.7e-85 319.3 268 61.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.0e-84 315.5 263 59.7
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.2e-84 315.1 268 62.7
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 6.7e-84 314.7 264 59.5
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.6e-83 312.8 266 57.9
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 4.4e-83 312.0 269 56.1
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 5.7e-83 311.6 251 62.2
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 7.5e-83 311.2 262 57.6
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.8e-81 306.6 264 58.3
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 7.0e-81 304.7 251 59.4
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 2.0e-80 303.1 252 57.5
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.0e-80 303.1 268 57.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 7.7e-80 301.2 268 57.8
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 7.7e-80 301.2 225 64.0
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 7.7e-80 301.2 266 58.3
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.0e-79 300.8 219 65.8
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.0e-79 300.8 249 59.4
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 1.0e-79 300.8 265 56.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 1.1e-78 297.4 264 56.4
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.9e-78 296.6 255 58.0
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 4.2e-78 295.4 255 57.6
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 7.2e-78 294.7 269 54.3
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 4.7e-77 292.0 253 54.5
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 8.0e-77 291.2 268 57.8
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.5e-75 287.0 251 59.0
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 2.6e-75 286.2 267 54.7
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.4e-75 285.4 263 55.9
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 5.7e-75 285.0 264 56.1
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 7.5e-75 284.6 211 64.0
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 3.7e-74 282.3 270 51.5
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.7e-74 282.3 257 53.3
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.4e-73 280.4 255 53.7
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.8e-73 280.0 244 56.1
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.1e-73 278.9 244 57.4
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 7.0e-73 278.1 244 56.1
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.9e-72 275.0 246 55.7
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.0e-71 274.2 251 57.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.3e-71 273.9 266 53.8
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 3.8e-71 272.3 250 54.8
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 8.6e-71 271.2 255 52.9
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.9e-70 270.0 274 55.8
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.2e-69 267.3 266 52.6
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.2e-69 267.3 273 55.7
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 8.0e-69 264.6 268 50.7
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 4.0e-68 262.3 264 50.0
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 5.2e-68 261.9 230 55.7
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.5e-67 260.4 284 47.9
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 2.6e-67 259.6 257 49.8
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 3.4e-67 259.2 263 50.2
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 3.4e-67 259.2 263 50.2
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 3.4e-67 259.2 263 50.2
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.4e-67 259.2 263 49.8
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 5.7e-67 258.5 209 59.3
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 5.7e-67 258.5 266 48.9
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 9.8e-67 257.7 201 60.7
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.7e-66 256.9 238 52.9
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.2e-66 256.5 241 53.1
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 3.7e-66 255.8 264 48.5
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.9e-66 255.4 264 50.4
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 6.3e-66 255.0 266 49.6
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.1e-65 254.2 286 46.5
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.1e-65 254.2 250 54.8
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.4e-65 253.1 262 48.5
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 2.4e-65 253.1 227 52.9
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 4.1e-65 252.3 274 50.0
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 9.2e-65 251.1 264 48.1
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 9.2e-65 251.1 251 51.8
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 9.2e-65 251.1 265 49.8
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.6e-64 250.4 267 51.3
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.7e-64 249.6 258 49.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.7e-64 249.6 250 54.4
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 4.5e-64 248.8 251 48.2
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 4.5e-64 248.8 285 47.0
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 1.0e-63 247.7 265 48.3
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 1.0e-63 247.7 265 48.3
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.0e-63 247.7 267 47.2
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 1.0e-63 247.7 241 49.8
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 2.9e-63 246.1 265 47.9
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 2.9e-63 246.1 265 47.9
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 6.6e-63 245.0 221 54.8
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 6.6e-63 245.0 259 47.1
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 1.5e-62 243.8 212 55.7
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 1.9e-62 243.4 220 55.9
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.5e-62 243.0 275 46.9
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.6e-62 241.9 258 46.9
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 4.7e-61 238.8 212 50.0
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 8.0e-61 238.0 159 70.4
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.4e-60 237.3 261 48.7
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 6.8e-60 235.0 272 46.7
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 6.8e-60 235.0 232 51.7
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 5.7e-59 231.9 211 52.6
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.9e-58 229.6 211 50.7
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.9e-58 228.8 210 51.4
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 4.9e-58 228.8 255 48.6
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.4e-57 227.3 239 46.9
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.4e-57 227.3 178 60.7
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.4e-57 226.5 309 42.1
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 3.2e-57 226.1 312 42.0
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.1e-57 225.7 265 45.7
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 9.2e-57 224.6 179 58.1
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 5.6e-54 215.3 170 61.8
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.5e-54 214.5 261 44.1
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 2.1e-53 213.4 283 42.0
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.3e-52 209.9 263 44.5
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 4.4e-51 205.7 179 59.8
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.2e-48 197.6 261 44.1
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.0e-48 195.3 152 61.2
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.5e-46 189.9 233 44.6
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.6e-46 188.7 264 43.9
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 6.2e-45 185.3 210 46.2
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-44 184.5 180 50.6
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 2.3e-44 183.3 244 43.0
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 5.4e-41 172.2 167 48.5
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 5.4e-41 172.2 220 46.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 6.6e-39 165.2 146 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 7.3e-38 161.8 307 30.3
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.8e-36 157.1 238 39.9
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 2.0e-35 153.7 221 36.7
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.4e-35 152.9 125 59.2
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 3.8e-34 149.4 318 30.2
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.6e-32 142.5 240 36.7
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 7.8e-32 141.7 232 36.6
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 3.9e-31 139.4 166 47.0
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.5e-30 136.7 194 43.3
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.8e-29 133.3 85 69.4
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.0e-28 129.4 264 33.7
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 9.0e-28 128.3 262 33.6
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.3e-26 124.4 132 50.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.7e-26 124.0 81 70.4
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 1.4e-25 120.9 263 32.7
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 3.9e-23 112.8 72 69.4
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 5.3e-20 102.4 144 41.7
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.2e-19 101.3 130 46.9
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.4e-19 99.8 87 56.3
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 6.4e-18 95.5 94 48.9
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 2.7e-16 90.1 47 85.1
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 3.3e-14 83.2 130 40.0
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.4e-14 82.0 120 43.3
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-14 81.6 185 33.0
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.5e-11 74.3 74 51.4
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 4.5e-11 72.8 45 71.1
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 5.8e-11 72.4 59 61.0
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 3.8e-10 69.7 43 72.1
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.2e-08 64.7 66 54.5
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.3e-07 60.5 65 49.2


User provided reference genes

Program Settings