Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 6.9e-125 450.7 229 100.0
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.5e-103 379.0 215 88.4
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.0e-100 369.4 217 86.2
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.0e-99 367.1 217 85.7
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 7.1e-98 360.9 217 82.9
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 4.6e-97 358.2 219 84.5
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.3e-96 356.7 217 81.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 6.7e-96 354.4 217 81.1
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.1e-95 353.6 217 81.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 3.7e-94 348.6 223 78.9
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 4.8e-94 348.2 221 80.5
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 3.1e-93 345.5 217 79.7
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.1e-93 345.5 221 79.6
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.1e-93 345.5 217 78.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.4e-92 342.0 217 78.8
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 5.9e-92 341.3 217 78.3
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.2e-91 339.3 218 79.4
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 2.2e-91 339.3 216 77.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 3.8e-91 338.6 215 77.2
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.8e-91 338.6 217 77.4
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 3.8e-91 338.6 217 76.0
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 6.5e-91 337.8 218 78.0
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 6.5e-91 337.8 260 70.8
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 8.5e-91 337.4 215 77.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 8.5e-91 337.4 219 76.3
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.9e-90 336.3 217 79.7
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 3.2e-90 335.5 218 76.6
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 9.4e-90 334.0 217 76.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.8e-88 329.7 214 75.2
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 3.9e-88 328.6 217 75.6
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 3.9e-88 328.6 217 75.6
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 3.9e-88 328.6 216 76.4
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 5.1e-88 328.2 219 73.1
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.1e-87 327.0 217 75.1
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 1.1e-87 327.0 250 69.6
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.0e-87 326.2 233 74.2
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.5e-87 325.9 204 76.5
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.5e-87 325.9 218 75.7
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 4.3e-87 325.1 217 74.7
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 7.4e-87 324.3 192 81.8
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.8e-86 322.4 195 80.5
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 6.3e-86 321.2 217 72.8
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.1e-85 320.5 192 80.7
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.4e-85 320.1 222 72.1
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.4e-85 320.1 215 74.9
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.8e-85 319.7 182 87.4
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 3.1e-85 318.9 217 71.9
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.4e-84 315.5 214 72.9
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 4.5e-84 315.1 215 71.6
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.9e-84 314.7 218 73.9
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 7.7e-84 314.3 216 71.3
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 7.7e-84 314.3 226 69.5
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.7e-83 313.2 217 71.0
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 3.8e-83 312.0 216 70.8
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 8.5e-83 310.8 190 82.1
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.4e-82 310.1 195 74.9
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.4e-82 310.1 204 74.0
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.9e-82 309.7 207 72.9
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 4.2e-82 308.5 215 71.6
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 7.2e-82 307.8 215 70.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 7.2e-82 307.8 215 70.7
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 9.4e-82 307.4 223 72.6
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.6e-81 306.6 215 70.2
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 4.7e-81 305.1 191 76.4
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.0e-80 303.9 182 79.7
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.4e-80 303.5 182 81.3
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.9e-80 302.0 227 68.3
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.6e-79 299.3 227 67.4
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 7.4e-79 297.7 215 68.8
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.3e-78 297.0 216 68.1
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.7e-78 296.6 221 71.5
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.2e-78 296.2 215 66.5
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.8e-78 295.8 221 69.7
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 3.7e-78 295.4 216 67.6
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 4.8e-78 295.0 216 66.2
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 8.2e-78 294.3 193 71.0
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 8.2e-78 294.3 217 66.8
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.8e-77 293.1 216 67.1
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 4.1e-77 292.0 217 65.4
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 5.3e-77 291.6 215 67.0
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 9.1e-77 290.8 215 66.0
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 2.6e-76 289.3 185 80.5
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.5e-76 288.9 193 71.5
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 2.2e-75 286.2 216 65.7
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 6.5e-75 284.6 193 69.9
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.5e-75 284.6 198 72.7
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 4.7e-73 278.5 219 64.4
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 4.7e-73 278.5 217 65.9
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.4e-72 276.9 216 65.3
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.0e-72 275.8 196 66.8
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.0e-72 275.8 196 66.8
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 6.7e-72 274.6 216 64.4
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.2e-70 269.6 197 68.5
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 2.2e-70 269.6 200 64.0
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.4e-69 266.2 182 73.1
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 7.0e-69 264.6 201 63.7
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 3.5e-68 262.3 241 58.5
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 3.5e-68 262.3 176 69.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 7.7e-68 261.2 241 58.1
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.1e-66 257.3 216 62.0
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.1e-65 253.1 172 72.1
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.2e-63 247.3 241 56.8
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.2e-63 247.3 153 77.1
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 9.1e-61 237.7 187 59.9
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 3.8e-59 232.3 177 67.8
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.5e-58 230.3 193 62.7
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.9e-58 229.9 173 66.5
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.0e-56 224.2 161 65.2
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 1.5e-55 220.3 168 65.5
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.0e-55 219.9 248 48.0
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.3e-54 217.2 187 56.1
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.7e-54 216.9 173 64.2
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.6e-52 210.3 217 58.5
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.6e-52 210.3 172 60.5
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 5.9e-52 208.4 161 59.6
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.5e-50 203.0 145 65.5
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.2e-50 201.4 156 66.0
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 3.6e-49 199.1 126 77.0
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.6e-47 193.0 160 56.2
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.7e-44 183.0 116 73.3
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 6.4e-38 161.8 131 61.1
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 3.9e-35 152.5 210 41.4
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 3.3e-34 149.4 88 80.7
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 3.7e-30 136.0 83 74.7
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.0e-27 127.9 107 62.6
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 1.1e-24 117.9 190 35.8
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 6.8e-24 115.2 165 38.2
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.4e-21 107.5 200 36.5
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 9.2e-21 104.8 108 53.7
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.7e-19 100.5 162 40.1
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 5.1e-19 99.0 151 43.0
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 6.8e-16 88.6 71 57.7
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 3.4e-15 86.3 87 56.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.7e-14 84.0 59 62.7
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.1e-13 81.3 68 57.4
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.4e-13 80.1 51 68.6
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 7.1e-13 78.6 69 58.0
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 2.7e-12 76.6 153 31.4
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.5e-10 70.9 47 66.0
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 9.6e-10 68.2 57 59.6
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.6e-09 67.4 174 29.9
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.1e-09 67.0 34 88.2
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 2.8e-09 66.6 36 83.3
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 8.1e-09 65.1 39 74.4
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 2.4e-08 63.5 165 26.1
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 6.9e-08 62.0 35 80.0
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.5e-07 60.8 78 47.4
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-07 60.1 53 52.8
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 7.6e-07 58.5 167 28.7


User provided reference genes

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