Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02499 Davidia involucrata HOM05D003472 ORTHO05D004200 3.9e-60 234.6 115 100.0
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 6.4e-39 164.1 88 92.0
Dinv06032 Davidia involucrata HOM05D003472 ORTHO05D004200 1.4e-38 162.9 88 92.0
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 1.2e-29 133.3 92 71.7
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 9.6e-27 123.6 78 74.4
Oeu009991.1 Olea europaea HOM05D003472 ORTHO05D004200 1.6e-26 122.9 92 68.5
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 1.6e-26 122.9 92 68.5
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 5.3e-25 117.9 84 69.0
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 5.3e-25 117.9 86 67.4
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 6.9e-25 117.5 78 67.9
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 6.9e-25 117.5 81 70.4
Rhsim07G0079700 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.5e-24 116.3 92 65.2
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 2.0e-24 115.9 80 68.8
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 2.0e-24 115.9 84 66.7
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 4.5e-24 114.8 92 62.0
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 5.9e-24 114.4 85 67.1
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 1.7e-23 112.8 84 65.5
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 2.2e-23 112.5 84 66.7
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 2.2e-23 112.5 80 67.5
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 2.2e-23 112.5 79 68.4
CSS0032814 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 6.5e-23 110.9 85 63.5
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 6.5e-23 110.9 75 69.3
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 6.5e-23 110.9 90 62.2
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 6.5e-23 110.9 87 64.4
vmacro09227 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 6.5e-23 110.9 82 67.1
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 8.4e-23 110.5 81 67.9
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 8.4e-23 110.5 79 69.6
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 8.4e-23 110.5 81 67.9
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 8.4e-23 110.5 78 67.9
QL02p028402 Quercus lobata HOM05D003472 ORTHO05D004200 1.1e-22 110.2 84 64.3
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 1.1e-22 110.2 87 60.9
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.4e-22 109.8 89 62.9
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.4e-22 109.8 89 62.9
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 1.4e-22 109.8 90 62.2
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.4e-22 109.8 85 63.5
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 3.2e-22 108.6 81 64.2
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 3.2e-22 108.6 75 66.7
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 3.2e-22 108.6 88 62.5
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 4.2e-22 108.2 90 61.1
QL02p028401 Quercus lobata HOM05D003472 ORTHO05D004200 4.2e-22 108.2 84 64.3
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 7.2e-22 107.5 85 61.2
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 9.3e-22 107.1 78 66.7
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.2e-21 106.7 76 67.1
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 1.2e-21 106.7 77 66.2
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 2.1e-21 105.9 80 62.5
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 2.1e-21 105.9 84 60.7
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 3.5e-21 105.1 78 66.7
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.5e-21 105.1 84 63.1
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 4.6e-21 104.8 88 60.2
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 6.1e-21 104.4 78 65.4
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 7.9e-21 104.0 86 61.6
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 1.0e-20 103.6 78 65.4
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.0e-20 103.6 88 64.8
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 1.0e-20 103.6 86 61.6
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 1.3e-20 103.2 78 64.1
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 1.8e-20 102.8 78 64.1
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.8e-20 102.8 78 64.1
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.8e-20 102.8 90 57.8
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 2.3e-20 102.4 78 61.5
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.0e-20 102.1 78 64.1
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 3.0e-20 102.1 78 64.1
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 3.0e-20 102.1 90 56.7
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 3.9e-20 101.7 88 58.0
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 5.1e-20 101.3 73 67.1
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 6.7e-20 100.9 78 60.3
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 6.7e-20 100.9 78 66.7
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 6.7e-20 100.9 76 69.7
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 8.7e-20 100.5 78 61.5
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.5e-19 99.8 91 56.0
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.9e-19 99.4 76 64.5
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.5e-19 99.0 88 63.6
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 3.3e-19 98.6 88 61.4
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 4.3e-19 98.2 74 63.5
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 5.7e-19 97.8 85 57.6
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.3e-18 96.7 72 70.8
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 1.3e-18 96.7 81 58.0
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 2.2e-18 95.9 74 62.2
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 2.2e-18 95.9 73 71.2
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 3.7e-18 95.1 79 57.0
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 1.1e-17 93.6 92 52.2
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.1e-17 93.6 75 61.3
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 2.4e-17 92.4 75 60.0
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 2.4e-17 92.4 88 61.4
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 3.1e-17 92.0 78 56.4
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 4.1e-17 91.7 75 60.0
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 4.1e-17 91.7 75 58.7
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 5.3e-17 91.3 75 57.3
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 9.0e-17 90.5 86 52.3
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 9.0e-17 90.5 79 53.2
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 9.0e-17 90.5 87 55.2
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 2.0e-16 89.4 93 52.7
TPR.G40004 Trifolium pratense HOM05D003472 ORTHO05D004200 3.4e-16 88.6 87 54.0
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 5.9e-16 87.8 88 52.3
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 5.9e-16 87.8 89 51.7
Psat7g022760 Pisum sativum HOM05D003472 ORTHO05D004200 1.7e-15 86.3 74 56.8
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 1.7e-15 86.3 85 51.8
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 2.2e-15 85.9 74 55.4
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 5.0e-15 84.7 85 49.4
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 6.5e-15 84.3 73 58.9
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 3.2e-14 82.0 78 52.6
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 7.2e-14 80.9 68 58.8
Lalb_Chr05g0223891 Lupinus albus HOM05D003472 ORTHO05D004200 1.4e-12 76.6 70 51.4
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 3.0e-12 75.5 83 53.0
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 3.9e-12 75.1 89 44.9
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 8.8e-12 73.9 70 55.7
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 1.1e-11 73.6 73 47.9
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 2.0e-11 72.8 73 47.9
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 3.3e-11 72.0 68 51.5
Lj4g0019041 Lotus japonicus HOM05D003472 ORTHO05D004200 4.3e-11 71.6 73 49.3
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 5.7e-11 71.2 84 48.8
arahy.Tifrunner.gnm1.ann1.TJXZ67 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.7e-10 69.7 96 41.7
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 1.7e-10 69.7 73 49.3
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 2.8e-10 68.9 73 49.3
Aa31LG6G7240 Aethionema arabicum HOM05D003472 ORTHO05D004200 2.4e-09 65.9 82 48.8
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 2.4e-09 65.9 78 51.3
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 3.1e-09 65.5 82 48.8
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 4.1e-09 65.1 82 48.8
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 6.9e-09 64.3 78 50.0
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 6.9e-09 64.3 78 50.0
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 6.9e-09 64.3 83 51.8
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 1.2e-08 63.5 77 50.6
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 1.2e-08 63.5 77 50.6
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 1.5e-08 63.2 83 45.8
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.5e-08 63.2 66 45.5
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 2.6e-08 62.4 92 45.7
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 5.9e-08 61.2 92 43.5
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 5.9e-08 61.2 84 44.0
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 1.3e-07 60.1 75 53.3
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 5.0e-07 58.2 45 55.6
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 6.5e-07 57.8 40 67.5
Lj8C203T14 Lonicera japonica HOM05D003472 ORTHO05D004200 3.2e-06 55.5 40 65.0
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.2e-06 55.5 74 39.2
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 7.2e-06 54.3 70 41.4
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 9.4e-06 53.9 82 43.9
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 9.4e-06 53.9 82 43.9
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 9.4e-06 53.9 67 46.3
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 9.4e-06 53.9 67 46.3
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 9.4e-06 53.9 64 45.3


User provided reference genes

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