Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02142 Davidia involucrata HOM05D004403 ORTHO05D006164 8.5e-99 363.6 177 100.0
Dinv02140 Davidia involucrata HOM05D004403 ORTHO05D006164 5.2e-96 354.4 177 97.7
Dinv02141 Davidia involucrata HOM05D004403 ORTHO05D006164 1.7e-86 322.8 157 99.4
Dinv00168 Davidia involucrata HOM05D004403 ORTHO05D006164 6.3e-86 320.9 158 98.1
Hma1.2p1_0099F.1_g048870 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 8.0e-73 277.3 157 82.2
Hma1.2p1_0099F.1_g048890 Hydrangea macrophylla HOM05D004403 ORTHO05D006164 8.0e-73 277.3 157 82.2
CSS0005074 Camellia sinensis var. sinensis HOM05D004403 ORTHO05D006164 5.8e-71 271.2 157 80.9
Actinidia25041 Actinidia chinensis HOM05D004403 ORTHO05D006164 8.3e-70 267.3 159 78.6
TAR375G1017 Trochodendron aralioides HOM05D004403 ORTHO05D006164 1.0e-67 260.4 157 76.4
vmacro06764 Vaccinium macrocarpon HOM05D004403 ORTHO05D006164 4.3e-66 255.0 159 76.1
Thecc.03G162000 Theobroma cacao HOM05D004403 ORTHO05D006164 7.3e-66 254.2 157 75.2
GSVIVG01018506001 Vitis vinifera HOM05D004403 ORTHO05D006164 2.1e-65 252.7 157 75.8
COL.COLO4_14184 Corchorus olitorius HOM05D004403 ORTHO05D006164 8.0e-65 250.8 157 75.2
Lj8C36G18 Lonicera japonica HOM05D004403 ORTHO05D006164 8.0e-65 250.8 158 75.9
Prupe.2G282700 Prunus persica HOM05D004403 ORTHO05D006164 1.4e-64 250.0 158 74.1
CiPaw.04G063300 Carya illinoinensis HOM05D004403 ORTHO05D006164 1.8e-64 249.6 157 77.1
MD01G1186100 Malus domestica HOM05D004403 ORTHO05D006164 3.1e-64 248.8 158 74.1
Nn1g01207 Nelumbo nucifera HOM05D004403 ORTHO05D006164 1.5e-63 246.5 155 74.8
Cc02_g03860 Coffea canephora HOM05D004403 ORTHO05D006164 3.4e-63 245.4 161 70.8
RcHm_v2.0_Chr1g0375181 Rosa chinensis HOM05D004403 ORTHO05D006164 3.4e-63 245.4 159 72.3
Rhsim03G0172000 Rhododendron simsii HOM05D004403 ORTHO05D006164 7.5e-63 244.2 157 72.6
FvH4_7g28210 Fragaria vesca HOM05D004403 ORTHO05D006164 1.7e-62 243.0 158 70.9
FAN06G1852 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.7e-62 243.0 158 70.9
Hund11791 Selenicereus undatus HOM05D004403 ORTHO05D006164 2.2e-62 242.7 161 70.8
FAN03G0558 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.1e-61 240.4 158 69.6
FAN03G1790 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.1e-61 240.4 158 69.6
FAN06G4744 Fragaria x ananassa HOM05D004403 ORTHO05D006164 1.1e-61 240.4 158 69.6
FAN01G1597 Fragaria x ananassa HOM05D004403 ORTHO05D006164 2.4e-61 239.2 158 69.6
PGR142G2186 Punica granatum HOM05D004403 ORTHO05D006164 5.4e-61 238.0 157 67.5
Haze_13825 Corylus avellana HOM05D004403 ORTHO05D006164 9.2e-61 237.3 159 72.3
MBI04_g32240_MAGBIO Magnolia biondii HOM05D004403 ORTHO05D006164 1.2e-60 236.9 157 69.4
Gohir.D09G045100 Gossypium hirsutum HOM05D004403 ORTHO05D006164 1.6e-60 236.5 157 69.4
Gorai.006G065300 Gossypium raimondii HOM05D004403 ORTHO05D006164 1.6e-60 236.5 157 69.4
Cfa008231 Carpinus fangiana HOM05D004403 ORTHO05D006164 2.1e-60 236.1 159 73.0
THA.LOC104825074 Tarenaya hassleriana HOM05D004403 ORTHO05D006164 2.1e-60 236.1 158 67.7
FAN10G1553 Fragaria x ananassa HOM05D004403 ORTHO05D006164 4.6e-60 235.0 158 69.6
TWI39G0431 Tripterygium wilfordii HOM05D004403 ORTHO05D006164 4.6e-60 235.0 155 71.0
Gohir.A09G043600 Gossypium hirsutum HOM05D004403 ORTHO05D006164 7.8e-60 234.2 157 68.8
Aa31LG3G8090 Aethionema arabicum HOM05D004403 ORTHO05D006164 1.3e-59 233.4 156 68.6
CARHR264420 Cardamine hirsuta HOM05D004403 ORTHO05D006164 5.1e-59 231.5 156 68.6
ClCG09G013360 Citrullus lanatus HOM05D004403 ORTHO05D006164 8.6e-59 230.7 157 68.8
Eucgr.K00143 Eucalyptus grandis HOM05D004403 ORTHO05D006164 1.1e-58 230.3 158 69.6
SalBow2G1183 Salvia bowleyana HOM05D004403 ORTHO05D006164 1.1e-58 230.3 162 66.7
Oeu021730.2 Olea europaea HOM05D004403 ORTHO05D006164 3.3e-58 228.8 159 66.7
Ciclev10004147m.g Citrus clementina HOM05D004403 ORTHO05D006164 4.3e-58 228.4 155 69.0
Sc17g0003760 Simmondsia chinensis HOM05D004403 ORTHO05D006164 5.6e-58 228.0 162 65.4
SGA_v2.0_scaffold303G47887 Striga asiatica HOM05D004403 ORTHO05D006164 2.8e-57 225.7 159 69.8
Migut.F01168 Erythranthe guttata HOM05D004403 ORTHO05D006164 6.2e-57 224.6 159 67.9
Lalb_Chr03g0033081 Lupinus albus HOM05D004403 ORTHO05D006164 6.2e-57 224.6 161 65.8
MELO3C008722.2 Cucumis melo HOM05D004403 ORTHO05D006164 1.1e-56 223.8 157 66.9
AT5G51660 Arabidopsis thaliana HOM05D004403 ORTHO05D006164 3.1e-56 222.2 157 66.2
AUR62035037 Chenopodium quinoa HOM05D004403 ORTHO05D006164 4.0e-56 221.9 162 65.4
AL8G25910 Arabidopsis lyrata HOM05D004403 ORTHO05D006164 5.2e-56 221.5 157 66.2
arahy.Tifrunner.gnm1.ann1.ZK7SIQ Arachis hypogaea HOM05D004403 ORTHO05D006164 5.2e-56 221.5 168 66.1
Thhalv10012441m.g Eutrema salsugineum HOM05D004403 ORTHO05D006164 5.2e-56 221.5 158 66.5
arahy.Tifrunner.gnm1.ann1.R8RU34 Arachis hypogaea HOM05D004403 ORTHO05D006164 1.5e-55 219.9 168 65.5
Sed0016961 Sechium edule HOM05D004403 ORTHO05D006164 1.5e-55 219.9 157 66.9
CsaV3_2G009710 Cucumis sativus L. HOM05D004403 ORTHO05D006164 2.0e-55 219.5 157 65.0
BcaB05g23994 Brassica carinata HOM05D004403 ORTHO05D006164 7.6e-55 217.6 158 64.6
Ah.07g208350 Amaranthus hybridus HOM05D004403 ORTHO05D006164 1.7e-54 216.5 161 64.6
BcaC03g14584 Brassica carinata HOM05D004403 ORTHO05D006164 3.7e-54 215.3 161 64.0
BolC2t08162H Brassica oleracea HOM05D004403 ORTHO05D006164 3.7e-54 215.3 161 64.0
EL10Ac3g05779 Beta vulgaris HOM05D004403 ORTHO05D006164 6.4e-54 214.5 161 62.7
QL12p039581 Quercus lobata HOM05D004403 ORTHO05D006164 1.1e-53 213.8 164 64.6
A02p12180 Brassica napus HOM05D004403 ORTHO05D006164 1.9e-53 213.0 161 63.4
BraA02t06282Z Brassica rapa HOM05D004403 ORTHO05D006164 1.9e-53 213.0 161 63.4
Nitab4.5_0009404g0010 Nicotiana tabacum HOM05D004403 ORTHO05D006164 1.9e-53 213.0 157 65.6
ATR0810G058 Amborella trichopoda HOM05D004403 ORTHO05D006164 2.4e-53 212.6 162 63.0
C02p20300 Brassica napus HOM05D004403 ORTHO05D006164 2.4e-53 212.6 161 63.4
CDE12G0311 Ceratophyllum demersum HOM05D004403 ORTHO05D006164 4.1e-53 211.8 159 66.7
CAN.G916.4 Capsicum annuum HOM05D004403 ORTHO05D006164 5.4e-53 211.5 157 65.0
Potri.012G022700 Populus trichocarpa HOM05D004403 ORTHO05D006164 5.4e-53 211.5 161 64.0
Sabra12G0011100 Salix brachista HOM05D004403 ORTHO05D006164 5.4e-53 211.5 161 64.0
Sopen03g003090 Solanum pennellii HOM05D004403 ORTHO05D006164 7.1e-53 211.1 157 65.0
Lsat_1_v5_gn_8_8061 Lactuca sativa HOM05D004403 ORTHO05D006164 9.2e-53 210.7 163 63.8
Aqoxy7G00599 Aquilegia oxysepala HOM05D004403 ORTHO05D006164 1.2e-52 210.3 167 64.1
Carub.0008s1166 Capsella rubella HOM05D004403 ORTHO05D006164 1.2e-52 210.3 160 63.8
Solyc03g007100.3 Solanum lycopersicum HOM05D004403 ORTHO05D006164 2.1e-52 209.5 157 64.3
Sp6g13860 Schrenkiella parvula HOM05D004403 ORTHO05D006164 4.6e-52 208.4 154 65.6
Ca_26390_v3 Cicer arietinum L. HOM05D004403 ORTHO05D006164 3.9e-51 205.3 164 61.6
HPP92_003516 Vanilla planifolia HOM05D004403 ORTHO05D006164 5.1e-51 204.9 157 59.2
PSO782G0596 Papaver somniferum HOM05D004403 ORTHO05D006164 6.6e-51 204.5 161 66.5
Medtr6g461810 Medicago truncatula HOM05D004403 ORTHO05D006164 8.6e-51 204.1 165 60.6
Psat1g115120 Pisum sativum HOM05D004403 ORTHO05D006164 1.1e-50 203.8 162 60.5
ECA233G5768 Erigeron canadensis HOM05D004403 ORTHO05D006164 2.5e-50 202.6 164 61.6
Nitab4.5_0000072g0400 Nicotiana tabacum HOM05D004403 ORTHO05D006164 2.5e-50 202.6 149 65.1
HanXRQChr08g0214911 Helianthus annuus HOM05D004403 ORTHO05D006164 7.3e-50 201.1 161 62.7
Glyma.16G203900 Glycine max HOM05D004403 ORTHO05D006164 3.6e-49 198.7 162 60.5
DCAR_005517 Daucus carota HOM05D004403 ORTHO05D006164 4.7e-49 198.4 159 63.5
DCAR_016012 Daucus carota HOM05D004403 ORTHO05D006164 6.2e-49 198.0 159 62.9
SHI13862 Sapria himalayana HOM05D004403 ORTHO05D006164 6.2e-49 198.0 157 59.9
Cpa.g.sc3.267 Carica papaya HOM05D004403 ORTHO05D006164 1.4e-48 196.8 157 65.0
Lj2g0001335 Lotus japonicus HOM05D004403 ORTHO05D006164 1.4e-48 196.8 162 59.9
Glyma.09G153100 Glycine max HOM05D004403 ORTHO05D006164 1.8e-48 196.4 163 60.7
PSO478G4614 Papaver somniferum HOM05D004403 ORTHO05D006164 2.4e-48 196.1 161 64.0
VMungo0464G1100 Vigna mungo HOM05D004403 ORTHO05D006164 5.6e-42 174.9 223 44.4
Duzib205G1350 Durio zibethinus HOM05D004403 ORTHO05D006164 4.8e-41 171.8 108 70.4
AUR62016090 Chenopodium quinoa HOM05D004403 ORTHO05D006164 3.1e-40 169.1 162 54.9
Peaxi162Scf00192g01018 Petunia axillaris HOM05D004403 ORTHO05D006164 1.5e-39 166.8 157 53.5
Mapoly0021s0083 Marchantia polymorpha HOM05D004403 ORTHO05D006164 4.9e-38 161.8 175 52.0
unitig_0.g469 Utricularia gibba HOM05D004403 ORTHO05D006164 1.9e-37 159.8 159 49.7
Zm00001eb086790 Zea mays HOM05D004403 ORTHO05D006164 1.2e-36 157.1 166 51.2
Dinv28531 Davidia involucrata HOM05D004403 ORTHO05D006164 6.6e-35 151.4 90 82.2
AagrBONN_evm.TU.Sc2ySwM_228.3689 Anthoceros agrestis HOM05D004403 ORTHO05D006164 1.1e-34 150.6 172 46.5
Pp3c11_8810 Physcomitrium patens HOM05D004403 ORTHO05D006164 2.5e-34 149.4 168 47.0
CBR_g28568 Chara braunii HOM05D004403 ORTHO05D006164 3.2e-29 132.5 201 35.8
TPR.G10680 Trifolium pratense HOM05D004403 ORTHO05D006164 7.1e-29 131.3 113 56.6
SMO356G0002 Selaginella moellendorffii HOM05D004403 ORTHO05D006164 2.1e-28 129.8 169 45.0
TPR.G35938 Trifolium pratense HOM05D004403 ORTHO05D006164 2.9e-14 82.8 53 73.6
CDE04G0245 Ceratophyllum demersum HOM05D002993 ORTHO05D003432 7.2e-13 78.2 149 35.6
Cre13.g573450 Chlamydomonas reinhardtii HOM05D004403 ORTHO05D006164 2.3e-11 73.2 187 31.6
MCO07G456 Micromonas commoda HOM05D004403 ORTHO05D006164 3.0e-11 72.8 151 29.1
PRCOL_00006166 Prasinoderma coloniale HOM05D004403 ORTHO05D006164 8.5e-06 54.7 181 26.5


User provided reference genes

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