Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01512 Davidia involucrata HOM05D002425 ORTHO05D002709 1.0e-70 270.0 139 100.0
Dinv30053 Davidia involucrata HOM05D002425 ORTHO05D002709 1.7e-17 93.2 89 65.2
Dinv43849 Davidia involucrata HOM05D002425 ORTHO05D002709 1.7e-17 93.2 89 64.0
Dinv12211 Davidia involucrata HOM05D002425 ORTHO05D002709 2.9e-17 92.4 101 61.4
Dinv07412 Davidia involucrata HOM05D002425 ORTHO05D002709 3.2e-16 89.0 89 62.9
Dinv16725 Davidia involucrata HOM05D002425 ORTHO05D003661 5.4e-16 88.2 100 57.0
Dinv40525 Davidia involucrata HOM05D000596 ORTHO05D004566 9.3e-16 87.4 89 61.8
TAR628G0781 Trochodendron aralioides HOM05D002425 ORTHO05D002709 6.0e-15 84.7 84 57.1
Cpa.g.sc1556.2 Carica papaya HOM05D002425 ORTHO05D002709 2.3e-14 82.8 92 55.4
Rhsim07G0213100 Rhododendron simsii HOM05D002425 ORTHO05D002709 3.9e-14 82.0 81 56.8
Actinidia19619 Actinidia chinensis HOM05D002425 ORTHO05D002709 8.7e-14 80.9 101 48.5
Lsat_1_v5_gn_7_83541 Lactuca sativa HOM05D002425 ORTHO05D002709 8.7e-14 80.9 91 51.6
GSVIVG01009202001 Vitis vinifera HOM05D002425 ORTHO05D002709 1.5e-13 80.1 75 61.3
Dinv24141 Davidia involucrata HOM05D002425 ORTHO05D002709 2.5e-13 79.3 91 52.7
Sed0004611 Sechium edule HOM05D002425 ORTHO05D002709 4.3e-13 78.6 77 53.2
Dinv13564 Davidia involucrata HOM05D002425 ORTHO05D002709 5.6e-13 78.2 90 48.9
vmacro13022 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 5.6e-13 78.2 89 49.4
GSVIVG01012539001 Vitis vinifera HOM05D002425 ORTHO05D002709 9.6e-13 77.4 72 56.9
TWI59G1057 Tripterygium wilfordii HOM05D002425 ORTHO05D002709 2.1e-12 76.3 72 61.1
TAR628G0637 Trochodendron aralioides HOM05D002425 ORTHO05D002709 2.1e-12 76.3 70 58.6
Os03g0685500 Oryza sativa ssp. japonica HOM05D002425 ORTHO05D002709 2.8e-12 75.9 89 52.8
PSO170G0844 Papaver somniferum HOM05D002425 ORTHO05D002709 4.8e-12 75.1 85 50.6
Hma1.2p1_0010F.1_g006520 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 6.2e-12 74.7 83 56.6
PSO210G7313 Papaver somniferum HOM05D002425 ORTHO05D002709 6.2e-12 74.7 85 50.6
CiPaw.07G163300 Carya illinoinensis HOM05D002425 ORTHO05D002709 8.1e-12 74.3 90 48.9
ECA234G1117 Erigeron canadensis HOM05D002425 ORTHO05D002709 8.1e-12 74.3 100 47.0
TWI59G0391 Tripterygium wilfordii HOM05D002425 ORTHO05D002709 8.1e-12 74.3 78 53.8
HPP92_018832 Vanilla planifolia HOM05D002425 ORTHO05D002709 8.1e-12 74.3 70 58.6
Ah.02g123430 Amaranthus hybridus HOM05D002425 ORTHO05D002709 1.1e-11 73.9 89 50.6
CANSAT54G1313 Cannabis sativa HOM05D002425 ORTHO05D002709 1.1e-11 73.9 88 48.9
Oeu059900.1 Olea europaea HOM05D002425 ORTHO05D002709 1.1e-11 73.9 91 51.6
Duzib052G1175 Durio zibethinus HOM05D002425 ORTHO05D002709 1.4e-11 73.6 90 51.1
MD05G1048900 Malus domestica HOM05D002425 ORTHO05D002709 1.8e-11 73.2 89 49.4
CSS0029614 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 3.1e-11 72.4 86 52.3
CiPaw.06G158800 Carya illinoinensis HOM05D002425 ORTHO05D002709 3.1e-11 72.4 85 52.9
Prupe.8G071500 Prunus persica HOM05D002425 ORTHO05D002709 3.1e-11 72.4 88 47.7
Ciclev10002776m.g Citrus clementina HOM05D002425 ORTHO05D002709 4.0e-11 72.0 87 49.4
Duzib132G0972 Durio zibethinus HOM05D002425 ORTHO05D002709 4.0e-11 72.0 81 51.9
vmacro01869 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 4.0e-11 72.0 88 48.9
Ah.03g143270 Amaranthus hybridus HOM05D002425 ORTHO05D002709 5.3e-11 71.6 83 49.4
Cc02_g20770 Coffea canephora HOM05D002425 ORTHO05D002709 5.3e-11 71.6 72 55.6
Zm00001eb053320 Zea mays HOM05D002425 ORTHO05D002709 5.3e-11 71.6 82 51.2
Gohir.A13G050200 Gossypium hirsutum HOM05D002425 ORTHO05D002709 6.9e-11 71.2 81 53.1
Nn1g05629 Nelumbo nucifera HOM05D002425 ORTHO05D002709 6.9e-11 71.2 76 53.9
vmacro19606 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 6.9e-11 71.2 85 50.6
Dinv36955 Davidia involucrata HOM05D002425 ORTHO05D002709 1.2e-10 70.5 90 46.7
Sabra09G0059800 Salix brachista HOM05D002425 ORTHO05D002709 1.2e-10 70.5 90 51.1
HPP92_019595 Vanilla planifolia HOM05D002425 ORTHO05D002709 1.2e-10 70.5 76 56.6
MSTRG.5290 Avicennia marina HOM05D002425 ORTHO05D002709 1.5e-10 70.1 87 50.6
Cpa.g.sc20.24 Carica papaya HOM05D002425 ORTHO05D002709 1.5e-10 70.1 71 59.2
Rhsim11G0141600 Rhododendron simsii HOM05D002425 ORTHO05D002709 1.5e-10 70.1 89 48.3
MBI16_g30313_MAGBIO Magnolia biondii HOM05D002425 ORTHO05D002709 2.0e-10 69.7 86 47.7
TWI14G0247 Tripterygium wilfordii HOM05D002425 ORTHO05D002709 2.0e-10 69.7 72 55.6
CSS0000895 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 2.6e-10 69.3 86 51.2
Potri.001G282900 Populus trichocarpa HOM05D002425 ORTHO05D002709 2.6e-10 69.3 91 51.6
Manes.07G041000 Manihot esculenta HOM05D002425 ORTHO05D002709 3.4e-10 68.9 85 48.2
Potri.009G078100 Populus trichocarpa HOM05D002425 ORTHO05D002709 3.4e-10 68.9 91 49.5
Rhsim05G0100900 Rhododendron simsii HOM05D002425 ORTHO05D002709 3.4e-10 68.9 85 48.2
CiPaw.05G028600 Carya illinoinensis HOM05D002425 ORTHO05D002709 4.4e-10 68.6 87 52.9
Hma1.2p1_0908F.1_g235530 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 4.4e-10 68.6 63 57.1
Hma1.2p1_0908F.1_g235540 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 4.4e-10 68.6 63 57.1
Hma1.2p1_2737F.1_g327682 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 4.4e-10 68.6 63 57.1
Hma1.2p1_2737F.1_g327684 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 4.4e-10 68.6 63 57.1
Sed0026496 Sechium edule HOM05D002425 ORTHO05D002709 5.8e-10 68.2 87 49.4
CsaV3_2G030140 Cucumis sativus L. HOM05D002425 ORTHO05D002709 7.6e-10 67.8 87 49.4
Oeu040882.1 Olea europaea HOM05D002425 ORTHO05D002709 7.6e-10 67.8 78 50.0
VMungo0251G1961 Vigna mungo HOM05D002425 ORTHO05D002709 7.6e-10 67.8 71 54.9
Dinv35287 Davidia involucrata HOM05D002425 ORTHO05D002709 9.9e-10 67.4 57 70.2
CDE07G0186 Ceratophyllum demersum HOM05D002425 ORTHO05D002709 1.3e-09 67.0 79 51.9
Gohir.D13G048866 Gossypium hirsutum HOM05D002425 ORTHO05D002709 1.3e-09 67.0 90 50.0
HanXRQChr10g0297741 Helianthus annuus HOM05D002425 ORTHO05D002709 1.3e-09 67.0 75 50.7
Lsat_1_v5_gn_5_120701 Lactuca sativa HOM05D002425 ORTHO05D002709 1.3e-09 67.0 86 45.3
Psat5g245800 Pisum sativum HOM05D002425 ORTHO05D002709 1.3e-09 67.0 97 48.5
Sabra16G0176100 Salix brachista HOM05D002425 ORTHO05D002709 1.3e-09 67.0 91 49.5
Cc10_g08540 Coffea canephora HOM05D002425 ORTHO05D002709 1.7e-09 66.6 72 54.2
Nitab4.5_0027918g0010 Nicotiana tabacum HOM05D002425 ORTHO05D002709 1.7e-09 66.6 74 52.7
Phvul.002G214000 Phaseolus vulgaris HOM05D002425 ORTHO05D002709 1.7e-09 66.6 73 54.8
RcHm_v2.0_Chr6g0270231 Rosa chinensis HOM05D002425 ORTHO05D002709 1.7e-09 66.6 59 59.3
Hma1.2p1_0369F.1_g137460 Hydrangea macrophylla HOM05D002425 ORTHO05D002709 2.2e-09 66.2 85 48.2
CAN.G74.15 Capsicum annuum HOM05D002425 ORTHO05D002709 2.9e-09 65.9 73 53.4
Duzib248G1145 Durio zibethinus HOM05D002425 ORTHO05D002709 2.9e-09 65.9 87 51.7
Lj4g0012171 Lotus japonicus HOM05D002425 ORTHO05D002709 2.9e-09 65.9 98 46.9
Nitab4.5_0001259g0060 Nicotiana tabacum HOM05D002425 ORTHO05D002709 2.9e-09 65.9 73 53.4
Nitab4.5_0001259g0070 Nicotiana tabacum HOM05D002425 ORTHO05D002709 2.9e-09 65.9 64 57.8
Nitab4.5_0005861g0010 Nicotiana tabacum HOM05D002425 ORTHO05D002709 2.9e-09 65.9 64 57.8
FAN20G0126 Fragaria x ananassa HOM05D002425 ORTHO05D002709 3.8e-09 65.5 59 57.6
Gorai.013G054700 Gossypium raimondii HOM05D002425 ORTHO05D002709 3.8e-09 65.5 90 48.9
THA.LOC104819323 Tarenaya hassleriana HOM05D002425 ORTHO05D002709 3.8e-09 65.5 72 54.2
PGR042G0810 Punica granatum HOM05D002425 ORTHO05D002709 4.9e-09 65.1 72 48.6
Sopen10g018060 Solanum pennellii HOM05D002425 ORTHO05D002709 4.9e-09 65.1 74 54.1
PGSC0003DMG400029016 Solanum tuberosum HOM05D002425 ORTHO05D002709 4.9e-09 65.1 73 53.4
Aa31LG1G17500 Aethionema arabicum HOM05D002425 ORTHO05D002709 6.4e-09 64.7 97 44.3
Zm00001eb053330 Zea mays HOM05D002425 ORTHO05D002709 6.4e-09 64.7 81 48.1
CSS0041957 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 8.4e-09 64.3 79 51.9
FvH4_2g11490 Fragaria vesca HOM05D002425 ORTHO05D002709 8.4e-09 64.3 87 47.1
FAN15G3528 Fragaria x ananassa HOM05D002425 ORTHO05D002709 8.4e-09 64.3 87 47.1
Glyma.07G183000 Glycine max HOM05D002425 ORTHO05D002709 8.4e-09 64.3 96 47.9
Glyma.08G067000 Glycine max HOM05D002425 ORTHO05D002709 8.4e-09 64.3 96 47.9
Lalb_Chr05g0217911 Lupinus albus HOM05D002425 ORTHO05D002709 8.4e-09 64.3 77 50.6
Atru.chr6.1302 Acer truncatum HOM05D002425 ORTHO05D002709 1.1e-08 63.9 89 49.4
MSTRG.16624 Avicennia marina HOM05D002425 ORTHO05D002709 1.1e-08 63.9 86 50.0
Lalb_Chr16g0383001 Lupinus albus HOM05D002425 ORTHO05D002709 1.1e-08 63.9 61 57.4
Solyc10g047650.3 Solanum lycopersicum HOM05D002425 ORTHO05D002709 1.1e-08 63.9 74 52.7
CAN.G74.13 Capsicum annuum HOM05D002425 ORTHO05D002709 1.9e-08 63.2 62 54.8
COL.COLO4_32410 Corchorus olitorius HOM05D002425 ORTHO05D002709 2.4e-08 62.8 90 46.7
Lsat_1_v5_gn_3_1880 Lactuca sativa HOM05D002425 ORTHO05D002709 2.4e-08 62.8 55 54.5
vmacro04639 Vaccinium macrocarpon HOM05D002425 ORTHO05D002709 2.4e-08 62.8 91 41.8
Thhalv10014959m.g Eutrema salsugineum HOM05D002425 ORTHO05D002709 3.2e-08 62.4 96 44.8
FAN24G2949 Fragaria x ananassa HOM05D002425 ORTHO05D002709 3.2e-08 62.4 72 51.4
Gohir.D13G049000 Gossypium hirsutum HOM05D002425 ORTHO05D002709 3.2e-08 62.4 90 47.8
SalBow6G4961 Salvia bowleyana HOM05D002425 ORTHO05D002709 3.2e-08 62.4 59 57.6
Actinidia29337 Actinidia chinensis HOM05D002425 ORTHO05D002709 4.2e-08 62.0 72 50.0
Duzib052G0188 Durio zibethinus HOM05D002425 ORTHO05D002709 4.2e-08 62.0 82 46.3
ECA236G3977 Erigeron canadensis HOM05D002425 ORTHO05D002709 4.2e-08 62.0 81 44.4
Lsat_1_v5_gn_5_110320 Lactuca sativa HOM05D002425 ORTHO05D002709 4.2e-08 62.0 93 40.9
SalBow6G2032 Salvia bowleyana HOM05D002425 ORTHO05D002709 4.2e-08 62.0 80 46.2
CSS0030086 Camellia sinensis var. sinensis HOM05D002425 ORTHO05D002709 5.4e-08 61.6 83 49.4
PSO170G5084 Papaver somniferum HOM05D002425 ORTHO05D002709 5.4e-08 61.6 60 53.3
CDE04G1856 Ceratophyllum demersum HOM05D002425 ORTHO05D002709 7.1e-08 61.2 86 46.5
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 7.1e-08 61.2 85 44.7
ClCG08G011560 Citrullus lanatus HOM05D002425 ORTHO05D002709 9.3e-08 60.8 96 44.8
Phvul.006G201300 Phaseolus vulgaris HOM05D002425 ORTHO05D002709 9.3e-08 60.8 92 40.2
Thecc.02G127700 Theobroma cacao HOM05D002425 ORTHO05D002709 9.3e-08 60.8 62 54.8
unitig_746.g26891 Utricularia gibba HOM05D000423 ORTHO05D000284 9.3e-08 60.8 61 54.1
C09p09770 Brassica napus HOM05D002425 ORTHO05D002709 1.2e-07 60.5 84 46.4
PGR102G2622 Punica granatum HOM05D002425 ORTHO05D002709 1.2e-07 60.5 87 43.7
SGA_v2.0_scaffold337G49170 Striga asiatica HOM05D002425 ORTHO05D002709 1.2e-07 60.5 61 50.8
Gohir.A03G177800 Gossypium hirsutum HOM05D002425 ORTHO05D002709 1.6e-07 60.1 86 50.0
Peaxi162Scf00003g03238 Petunia axillaris HOM05D002425 ORTHO05D002709 1.6e-07 60.1 75 49.3
Peaxi162Scf00152g00827 Petunia axillaris HOM05D002425 ORTHO05D002709 1.6e-07 60.1 72 50.0
QL11p025715 Quercus lobata HOM05D002425 ORTHO05D002709 1.6e-07 60.1 82 43.9
Gohir.D02G201500 Gossypium hirsutum HOM05D002425 ORTHO05D002709 2.1e-07 59.7 79 50.6
Gohir.D06G030300 Gossypium hirsutum HOM05D002425 ORTHO05D002709 2.1e-07 59.7 89 39.3
Gorai.005G226300 Gossypium raimondii HOM05D002425 ORTHO05D002709 2.1e-07 59.7 79 50.6
Gorai.010G033300 Gossypium raimondii HOM05D002425 ORTHO05D002709 2.1e-07 59.7 89 39.3
Lj9C347G10 Lonicera japonica HOM05D002425 ORTHO05D002709 2.1e-07 59.7 47 63.8
Nn7g36725 Nelumbo nucifera HOM05D002425 ORTHO05D002709 2.1e-07 59.7 86 48.8
SMO364G0085 Selaginella moellendorffii HOM05D002425 ORTHO05D002709 2.1e-07 59.7 61 57.4
Sc16g0000640 Simmondsia chinensis HOM05D002425 ORTHO05D002709 2.1e-07 59.7 64 48.4
MSTRG.27818 Avicennia marina HOM05D002425 ORTHO05D002709 2.7e-07 59.3 63 57.1
Dinv44875 Davidia involucrata HOM05D002425 ORTHO05D002709 2.7e-07 59.3 57 66.7
Psat7g101640 Pisum sativum HOM05D002425 ORTHO05D002709 2.7e-07 59.3 87 48.3
Gohir.A06G031100 Gossypium hirsutum HOM05D002425 ORTHO05D002709 3.5e-07 58.9 89 39.3
Hund16518 Selenicereus undatus HOM05D002425 ORTHO05D002709 3.5e-07 58.9 90 45.6
unitig_899.g15644 Utricularia gibba HOM05D002425 ORTHO05D002709 3.5e-07 58.9 72 50.0
Migut.B00539 Erythranthe guttata HOM05D002425 ORTHO05D002709 4.6e-07 58.5 92 42.4
PGR042G3069 Punica granatum HOM05D002425 ORTHO05D002709 4.6e-07 58.5 60 55.0
Manes.18G056800 Manihot esculenta HOM05D002425 ORTHO05D002709 6.0e-07 58.2 69 47.8
PGR142G1682 Punica granatum HOM05D002425 ORTHO05D002709 6.0e-07 58.2 69 50.7
Lalb_Chr09g0326941 Lupinus albus HOM05D002425 ORTHO05D002709 7.9e-07 57.8 50 58.0
Ciclev10029537m.g Citrus clementina HOM05D002425 ORTHO05D002709 1.0e-06 57.4 52 57.7
Oeu038173.1 Olea europaea HOM05D002425 ORTHO05D002709 1.0e-06 57.4 87 41.4
MSTRG.20275 Avicennia marina HOM05D002425 ORTHO05D002709 1.3e-06 57.0 51 58.8
BcaC04g23319 Brassica carinata HOM05D002425 ORTHO05D002709 1.3e-06 57.0 67 49.3
BolC9t53888H Brassica oleracea HOM05D002425 ORTHO05D002709 1.3e-06 57.0 67 49.3
FAN15G1019 Fragaria x ananassa HOM05D002425 ORTHO05D002709 1.3e-06 57.0 55 56.4
Mapoly0137s0002 Marchantia polymorpha HOM05D002425 ORTHO05D002709 1.3e-06 57.0 86 44.2
Sopen10g018070 Solanum pennellii HOM05D002425 ORTHO05D002709 1.3e-06 57.0 73 47.9
SGA_v2.0_scaffold32G12933 Striga asiatica HOM05D002425 ORTHO05D002709 1.7e-06 56.6 69 50.7
AL8G41760 Arabidopsis lyrata HOM05D002425 ORTHO05D002709 3.0e-06 55.8 59 47.5
BcaB04g19969 Brassica carinata HOM05D002425 ORTHO05D002709 3.0e-06 55.8 64 45.3
A09p08660 Brassica napus HOM05D002425 ORTHO05D002709 3.0e-06 55.8 67 47.8
BraA09t36515Z Brassica rapa HOM05D002425 ORTHO05D002709 3.0e-06 55.8 67 47.8
CBR_g23843 Chara braunii HOM05D002425 ORTHO05D002709 3.0e-06 55.8 81 45.7
AUR62003687 Chenopodium quinoa HOM05D002425 ORTHO05D002709 3.0e-06 55.8 59 49.2
Ca_18393_v3 Cicer arietinum L. HOM05D002425 ORTHO05D002709 3.0e-06 55.8 63 50.8
HanXRQChr16g0514501 Helianthus annuus HOM05D002425 ORTHO05D002709 3.0e-06 55.8 101 39.6
Medtr4g093770 Medicago truncatula HOM05D002425 ORTHO05D002709 3.0e-06 55.8 96 45.8
Nn1g05628 Nelumbo nucifera HOM05D002425 ORTHO05D002709 3.0e-06 55.8 71 52.1
arahy.Tifrunner.gnm1.ann1.68LHHN Arachis hypogaea HOM05D002425 ORTHO05D002709 3.9e-06 55.5 92 45.7
MELO3C011073.2 Cucumis melo HOM05D002425 ORTHO05D002709 3.9e-06 55.5 58 53.4
Nitab4.5_0022581g0010 Nicotiana tabacum HOM05D002425 ORTHO05D002709 3.9e-06 55.5 53 52.8
A06p31070 Brassica napus HOM05D002425 ORTHO05D002709 5.1e-06 55.1 60 50.0
BraA06t26050Z Brassica rapa HOM05D002425 ORTHO05D002709 5.1e-06 55.1 60 50.0
DCAR_001853 Daucus carota HOM05D002425 ORTHO05D002709 6.6e-06 54.7 57 52.6
Nn5g29830 Nelumbo nucifera HOM05D002425 ORTHO05D002709 6.6e-06 54.7 62 51.6
QL09p018387 Quercus lobata HOM05D002425 ORTHO05D002709 6.6e-06 54.7 72 41.7
Eucgr.I02610 Eucalyptus grandis HOM05D002425 ORTHO05D002709 8.7e-06 54.3 72 45.8
RcHm_v2.0_Chr6g0270481 Rosa chinensis HOM05D002425 ORTHO05D002709 8.7e-06 54.3 53 58.5
Sp2g27490 Schrenkiella parvula HOM05D002425 ORTHO05D002709 8.7e-06 54.3 44 59.1


User provided reference genes

Program Settings