Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032486 Daucus carota HOM05D005573 ORTHO05D007161 1.8e-108 396.0 202 100.0
HanXRQChr02g0041471 Helianthus annuus HOM05D005573 ORTHO05D007161 4.7e-101 371.3 202 94.1
HanXRQChr02g0044961 Helianthus annuus HOM05D005573 ORTHO05D007161 4.7e-101 371.3 202 94.1
HanXRQChr07g0201021 Helianthus annuus HOM05D005573 ORTHO05D007161 4.7e-101 371.3 202 94.1
HanXRQChr08g0210291 Helianthus annuus HOM05D005573 ORTHO05D007161 4.7e-101 371.3 202 94.1
HanXRQChr10g0289201 Helianthus annuus HOM05D005573 ORTHO05D007161 4.7e-101 371.3 202 94.1
HanXRQChr11g0326731 Helianthus annuus HOM05D005573 ORTHO05D007161 4.7e-101 371.3 202 94.1
HanXRQCPg0579941 Helianthus annuus HOM05D005573 ORTHO05D007161 4.7e-101 371.3 202 94.1
Lsat_1_v5_gn_3_99201 Lactuca sativa HOM05D005573 ORTHO05D007161 2.3e-100 369.0 202 93.1
Hma1.2p1_0248F.1_g102160 Hydrangea macrophylla HOM05D005573 ORTHO05D007161 3.9e-100 368.2 202 93.1
PGR111G0074 Punica granatum HOM05D005573 ORTHO05D007161 9.7e-99 363.6 202 91.6
Migut.D01426 Erythranthe guttata HOM05D005573 ORTHO05D007161 2.8e-98 362.1 202 91.1
PSO548G0019 Papaver somniferum HOM05D005573 ORTHO05D007161 7.0e-97 357.5 202 90.6
CAN.G551.66 Capsicum annuum HOM05D005573 ORTHO05D007161 1.2e-96 356.7 202 90.1
CAN.G65.126 Capsicum annuum HOM05D005573 ORTHO05D007161 1.2e-96 356.7 202 90.1
SalBow1G4134 Salvia bowleyana HOM05D005573 ORTHO05D007161 1.2e-96 356.7 202 90.1
Nn1g10181 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.6e-96 356.3 202 90.1
Nn1g10183 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.6e-96 356.3 202 90.1
arahy.Tifrunner.gnm1.ann1.DMW7HF Arachis hypogaea HOM05D005573 ORTHO05D007161 1.7e-95 352.8 202 87.1
Sed0002328 Sechium edule HOM05D005573 ORTHO05D007161 2.9e-95 352.1 202 88.6
Sed0008322 Sechium edule HOM05D005573 ORTHO05D007161 2.9e-95 352.1 202 88.6
CAN.G1183.7 Capsicum annuum HOM05D005573 ORTHO05D007161 8.5e-95 350.5 202 88.6
Medtr4g051220 Medicago truncatula HOM05D005573 ORTHO05D007161 1.1e-94 350.1 202 88.1
A06p23260 Brassica napus HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BNapus_Darmor_BZH_scaffold_287p00070 Brassica napus HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BolSC45t60866H Brassica oleracea HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BolSC45t60946H Brassica oleracea HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BolSC46t60993H Brassica oleracea HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BolSC46t61042H Brassica oleracea HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BraA06t25428Z Brassica rapa HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BraSC140t45578Z Brassica rapa HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
BraSC151t45711Z Brassica rapa HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 89.1
LjContig00318g0014176 Lotus japonicus HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 87.6
CARHR282030 Cardamine hirsuta HOM05D005573 ORTHO05D007161 2.5e-94 349.0 202 88.6
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 9.4e-94 347.1 202 87.6
Gohir.A08G157500 Gossypium hirsutum HOM05D005573 ORTHO05D007161 2.1e-93 345.9 202 88.1
AL2G20730 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 2.7e-93 345.5 202 88.1
Lj2P1237T91 Lonicera japonica HOM05D005573 ORTHO05D007161 6.1e-93 344.4 204 89.7
Lj2P1239T179 Lonicera japonica HOM05D005573 ORTHO05D007161 6.1e-93 344.4 204 89.7
ATCG00380 Arabidopsis thaliana HOM05D005573 ORTHO05D007161 1.0e-92 343.6 202 87.6
AL2G21420 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 1.4e-92 343.2 202 87.6
BolSC49t61189H Brassica oleracea HOM05D005573 ORTHO05D007161 6.3e-90 334.3 204 86.8
Lj4g0013543 Lotus japonicus HOM05D005573 ORTHO05D007161 5.9e-88 327.8 202 84.2
Oeu012806.1 Olea europaea HOM05D005573 ORTHO05D007161 2.3e-84 315.8 199 80.9
Zm00001eb039080 Zea mays HOM05D005573 ORTHO05D007161 2.3e-84 315.8 202 78.7
Zm00001eb039210 Zea mays HOM05D005573 ORTHO05D007161 2.3e-84 315.8 202 78.7
Zm00001eb435020 Zea mays HOM05D005573 ORTHO05D007161 2.3e-84 315.8 202 78.7
Zm00001eb435220 Zea mays HOM05D005573 ORTHO05D007161 2.3e-84 315.8 202 78.7
Zm00001eb435420 Zea mays HOM05D005573 ORTHO05D007161 2.3e-84 315.8 202 78.7
Zm00001eb435680 Zea mays HOM05D005573 ORTHO05D007161 2.3e-84 315.8 202 78.7
Zm00001eb440990 Zea mays HOM05D005573 ORTHO05D007161 2.3e-84 315.8 202 78.7
Gohir.D04G083800 Gossypium hirsutum HOM05D005573 ORTHO05D007161 9.8e-83 310.5 202 81.2
EL10As12g24021 Beta vulgaris HOM05D005573 ORTHO05D007161 1.1e-81 307.0 200 78.0
PGSC0003DMG400024039 Solanum tuberosum HOM05D005573 ORTHO05D007161 1.7e-79 299.7 182 85.7
Glyma.01G153400 Glycine max HOM05D005573 ORTHO05D007161 5.5e-78 294.7 185 79.5
Gorai.006G201300 Gossypium raimondii HOM05D005573 ORTHO05D007161 2.6e-75 285.8 182 82.4
Gohir.D09G179300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.3e-74 283.5 182 81.9
C09p29560 Brassica napus HOM05D005573 ORTHO05D007161 5.4e-73 278.1 154 92.9
Medtr0002s0590 Medicago truncatula HOM05D005573 ORTHO05D007161 1.2e-72 276.9 182 75.8
Zm00001eb039100 Zea mays HOM05D005573 ORTHO05D007161 8.0e-69 264.2 172 77.3
Thhalv10010766m.g Eutrema salsugineum HOM05D005573 ORTHO05D007161 8.9e-68 260.8 202 71.3
Zm00001eb231240 Zea mays HOM05D005573 ORTHO05D007161 1.3e-66 256.9 177 74.0
Lalb_Chr07g0191491 Lupinus albus HOM05D005573 ORTHO05D007161 3.2e-65 252.3 151 86.1
Nitab4.5_0006596g0030 Nicotiana tabacum HOM05D005573 ORTHO05D007161 2.0e-64 249.6 151 86.8
SEGI_18745 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 1.7e-63 246.5 208 64.9
Gohir.A09G103300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.2e-61 240.4 148 86.5
Solyc09g015330.2 Solanum lycopersicum HOM05D005573 ORTHO05D007161 1.8e-60 236.5 156 80.1
TWI60G0396 Tripterygium wilfordii HOM05D005573 ORTHO05D007161 3.1e-60 235.7 138 85.5
GSVIVG01021975001 Vitis vinifera HOM05D005573 ORTHO05D007161 1.1e-57 227.3 132 89.4
arahy.Tifrunner.gnm1.ann1.NT5R3P Arachis hypogaea HOM05D005573 ORTHO05D007161 4.0e-52 208.8 149 73.8
HanXRQChr13g0413641 Helianthus annuus HOM05D005573 ORTHO05D007161 1.5e-51 206.8 114 89.5
HanXRQChr13g0413711 Helianthus annuus HOM05D005573 ORTHO05D007161 1.5e-51 206.8 114 89.5
HanXRQChr13g0413781 Helianthus annuus HOM05D005573 ORTHO05D007161 1.5e-51 206.8 114 89.5
HanXRQChr13g0413861 Helianthus annuus HOM05D005573 ORTHO05D007161 1.5e-51 206.8 114 89.5
HanXRQChr13g0413931 Helianthus annuus HOM05D005573 ORTHO05D007161 1.5e-51 206.8 114 89.5
Nn2g13212 Nelumbo nucifera HOM05D005573 ORTHO05D007161 5.8e-51 204.9 114 88.6
Nn423s46610 Nelumbo nucifera HOM05D005573 ORTHO05D007161 5.8e-51 204.9 114 88.6
Nn6g33243 Nelumbo nucifera HOM05D005573 ORTHO05D007161 3.7e-50 202.2 114 87.7
Eucgr.B02956 Eucalyptus grandis HOM05D005573 ORTHO05D007161 8.3e-50 201.1 114 85.1
CDE08G0454 Ceratophyllum demersum HOM05D000219 ORTHO05D000226 5.4e-49 198.4 114 86.8
Oeu062838.1 Olea europaea HOM05D005573 ORTHO05D007161 1.3e-47 193.7 129 81.4
Gohir.A10G100366 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.5e-46 190.3 114 81.6
ClCG00G003940 Citrullus lanatus HOM05D005573 ORTHO05D007161 2.1e-45 186.4 101 95.0
Gohir.A07G163636 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.1e-44 184.1 114 79.8
Potri.013G163300 Populus trichocarpa HOM05D005573 ORTHO05D007161 2.4e-44 183.0 103 85.4
Zm00001eb438350 Zea mays HOM05D005573 ORTHO05D007161 2.4e-44 183.0 114 77.2
CAN.G1478.12 Capsicum annuum HOM05D005573 ORTHO05D007161 5.8e-43 178.3 103 84.5
Lalb_Chr15g0080691 Lupinus albus HOM05D005573 ORTHO05D007161 7.1e-41 171.4 103 78.6
CAN.G129.6 Capsicum annuum HOM05D005573 ORTHO05D007161 6.0e-40 168.3 103 79.6
Phvul.011G056580 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 1.7e-39 166.8 101 84.2
BraSC25t45875Z Brassica rapa HOM05D005573 ORTHO05D007161 2.3e-39 166.4 103 79.6
Solyc09g015310.3 Solanum lycopersicum HOM05D005573 ORTHO05D007161 3.9e-39 165.6 102 77.5
CAN.G100.47 Capsicum annuum HOM05D005573 ORTHO05D007161 1.1e-38 164.1 103 77.7
Nn5g30925 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.6e-37 160.2 90 86.7
Migut.D01353 Erythranthe guttata HOM05D005573 ORTHO05D007161 6.2e-37 158.3 141 63.1
Phvul.008G150500 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 2.6e-35 152.9 94 73.4
SMO086G0035 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 2.9e-34 149.4 190 48.9
SMO086G0038 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 2.9e-34 149.4 190 48.9
BolC9t56936H Brassica oleracea HOM05D005573 ORTHO05D007161 1.6e-32 143.7 77 94.8
Zm00001eb434930 Zea mays HOM05D005573 ORTHO05D007161 1.5e-30 137.1 89 73.0
Gohir.A09G045300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 3.6e-29 132.5 70 97.1
arahy.Tifrunner.gnm1.ann1.NAZW4C Arachis hypogaea HOM05D005573 ORTHO05D007161 6.9e-28 128.3 104 64.4
TAR625G0941 Trochodendron aralioides HOM05D005573 ORTHO05D007161 6.9e-28 128.3 75 81.3
SEGI_40009 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 2.6e-27 126.3 101 68.3
BolSC47t61119H Brassica oleracea HOM05D005573 ORTHO05D007161 1.7e-26 123.6 64 98.4
HanXRQChr00c0345g0573881 Helianthus annuus HOM05D005573 ORTHO05D007161 3.8e-26 122.5 66 90.9
Gohir.A09G045446 Gossypium hirsutum HOM05D005573 ORTHO05D007161 2.4e-25 119.8 72 80.6
CAN.G63.13 Capsicum annuum HOM05D005573 ORTHO05D007161 2.7e-24 116.3 77 72.7
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 3.5e-24 115.9 79 79.7
BolSC29t60458H Brassica oleracea HOM05D005573 ORTHO05D007161 4.6e-24 115.5 66 84.8
BolSC47t61104H Brassica oleracea HOM05D005573 ORTHO05D007161 4.6e-24 115.5 66 84.8
CiPaw.12G056900 Carya illinoinensis HOM05D005573 ORTHO05D007161 6.0e-24 115.2 66 84.8
Oeu056456.1 Olea europaea HOM05D005573 ORTHO05D007161 5.1e-23 112.1 66 78.8
BolC7t41664H Brassica oleracea HOM05D005573 ORTHO05D007161 6.7e-23 111.7 76 72.4
Solyc11g022610.1 Solanum lycopersicum HOM05D005573 ORTHO05D007161 1.5e-22 110.5 76 82.9
Nn071s42388 Nelumbo nucifera HOM05D005573 ORTHO05D007161 7.4e-22 108.2 90 75.6
CAN.G653.3 Capsicum annuum HOM05D005573 ORTHO05D007161 1.3e-21 107.5 65 81.5
TAR375G0006 Trochodendron aralioides HOM05D005573 ORTHO05D007161 3.1e-20 102.8 61 82.0
Mapoly0090s0058 Marchantia polymorpha HOM05D005573 ORTHO05D007161 2.0e-19 100.1 66 72.7
Oeu052069.1 Olea europaea HOM05D005573 ORTHO05D007161 3.2e-17 92.8 109 53.2
Nn055s41940 Nelumbo nucifera HOM05D005573 ORTHO05D007161 9.3e-17 91.3 48 87.5
MELO3C027485.2 Cucumis melo HOM05D005573 ORTHO05D007161 1.2e-16 90.9 50 86.0
MELO3C022836.2 Cucumis melo HOM05D005573 ORTHO05D007161 4.6e-16 89.0 49 85.7
CAN.G331.1 Capsicum annuum HOM05D005573 ORTHO05D007161 7.9e-16 88.2 64 67.2
HanXRQChr13g0413681 Helianthus annuus HOM05D005573 ORTHO05D029920 3.0e-15 86.3 45 91.1
HanXRQChr13g0413751 Helianthus annuus HOM05D005573 ORTHO05D029920 3.0e-15 86.3 45 91.1
HanXRQChr13g0413831 Helianthus annuus HOM05D005573 ORTHO05D029920 3.0e-15 86.3 45 91.1
HanXRQChr13g0413901 Helianthus annuus HOM05D005573 ORTHO05D029920 3.0e-15 86.3 45 91.1
BraSC25t45840Z Brassica rapa HOM05D005573 ORTHO05D007161 6.7e-15 85.1 52 86.5
Oeu042745.1 Olea europaea HOM05D005573 ORTHO05D007161 8.7e-15 84.7 104 51.9
Nn021s41552 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.1e-14 84.3 41 97.6
Solyc11g022620.1 Solanum lycopersicum HOM05D005573 ORTHO05D007161 6.9e-12 75.1 55 63.6
Nn055s41939 Nelumbo nucifera HOM05D005573 ORTHO05D007161 3.4e-11 72.8 37 94.6
ClCG11G007200 Citrullus lanatus HOM05D005573 ORTHO05D007161 5.8e-11 72.0 46 73.9
Oeu041772.1 Olea europaea HOM05D005573 ORTHO05D007161 3.8e-10 69.3 58 63.8
Nitab4.5_0000261g0250 Nicotiana tabacum HOM05D005573 ORTHO05D007161 5.0e-10 68.9 41 75.6
BolC9t55817H Brassica oleracea HOM05D005573 ORTHO05D007161 8.4e-10 68.2 48 75.0
BolSC29t60581H Brassica oleracea HOM05D005573 ORTHO05D007161 1.9e-09 67.0 36 94.4
Glyma.18G203700 Glycine max HOM05D005573 ORTHO05D007161 2.1e-08 63.5 40 80.0
Gorai.006G198900 Gossypium raimondii HOM05D005573 ORTHO05D007161 1.5e-06 57.4 33 72.7


User provided reference genes

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