Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 8.0e-160 567.0 280 100.0
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 7.5e-142 507.3 283 90.5
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.1e-140 503.4 280 90.7
Nn1g10026 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-140 503.1 280 90.0
Nn1g10028 Nelumbo nucifera HOM05D003517 ORTHO05D009798 1.4e-140 503.1 280 90.0
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 3.2e-140 501.9 280 90.7
Lj5g0015285 Lotus japonicus HOM05D003517 ORTHO05D009798 3.9e-138 495.0 281 89.7
LjContig00439g0008559 Lotus japonicus HOM05D003517 ORTHO05D009798 3.9e-138 495.0 281 89.7
RcHm_v2.0_MTg0499001 Rosa chinensis HOM05D003517 ORTHO05D009798 5.1e-138 494.6 280 89.3
Lalb_Chr00c24g0406771 Lupinus albus HOM05D003517 ORTHO05D009798 1.2e-136 490.0 281 88.6
Medtr0082s0030 Medicago truncatula HOM05D003517 ORTHO05D009798 4.7e-136 488.0 284 88.4
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.3e-133 479.9 275 88.4
VMungo0985G0017 Vigna mungo HOM05D003517 ORTHO05D009798 2.9e-133 478.8 281 86.1
arahy.Tifrunner.gnm1.ann1.PT41Y0 Arachis hypogaea HOM05D003517 ORTHO05D009798 2.7e-131 472.2 281 86.8
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 1.7e-130 469.5 280 84.3
Ca_14831_v3 Cicer arietinum L. HOM05D003517 ORTHO05D009798 9.9e-126 453.8 260 88.8
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 9.9e-126 453.8 281 84.3
AT2G07734 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 5.4e-124 448.0 282 83.0
ATMG00290 Arabidopsis thaliana HOM05D003517 ORTHO05D009798 5.4e-124 448.0 282 83.0
Thhalv10023100m.g Eutrema salsugineum HOM05D003517 ORTHO05D009798 7.1e-124 447.6 282 83.0
A04p09560 Brassica napus HOM05D003517 ORTHO05D009798 1.2e-123 446.8 282 83.0
BolSC28t60322H Brassica oleracea HOM05D003517 ORTHO05D009798 1.2e-123 446.8 282 83.0
BraSC48t46302Z Brassica rapa HOM05D003517 ORTHO05D009798 1.2e-123 446.8 282 83.0
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 3.5e-123 445.3 257 88.3
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.9e-122 441.8 272 83.5
BraSC48t46288Z Brassica rapa HOM05D003517 ORTHO05D009798 9.6e-121 437.2 283 81.6
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 4.5e-118 428.3 292 76.4
SabraMtG0002700 Salix brachista HOM05D000890 ORTHO05D000697 3.7e-112 408.7 266 80.8
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 9.0e-111 404.1 280 76.4
HanXRQChr16g0504301 Helianthus annuus HOM05D003517 ORTHO05D009798 2.1e-107 392.9 258 79.5
HanXRQMTg0579381 Helianthus annuus HOM05D003517 ORTHO05D009798 2.1e-107 392.9 258 79.5
Lsat_1_v5_gn_7_67721 Lactuca sativa HOM05D003517 ORTHO05D009798 1.8e-106 389.8 258 79.1
Hma1.2p1_0020F.1_g014210 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 1.1e-100 370.5 211 88.6
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 1.0e-98 364.0 230 83.5
Eucgr.C02512 Eucalyptus grandis HOM05D003517 ORTHO05D009798 7.4e-97 357.8 229 81.7
Eucgr.H02717 Eucalyptus grandis HOM05D003517 ORTHO05D009798 9.1e-87 324.3 215 79.5
Zm00001eb384400 Zea mays HOM05D003517 ORTHO05D009798 2.6e-78 296.2 181 82.9
CAN.G85.23 Capsicum annuum HOM05D003517 ORTHO05D009798 1.1e-76 290.8 168 88.1
Sp3g25550 Schrenkiella parvula HOM05D003517 ORTHO05D009798 1.8e-74 283.5 282 59.6
PGSC0003DMG400033608 Solanum tuberosum HOM05D003517 ORTHO05D009798 9.1e-71 271.2 147 91.8
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 1.9e-68 263.5 280 57.1
TPR.G36113 Trifolium pratense HOM05D003517 ORTHO05D009798 1.2e-67 260.8 149 89.3
HanXRQChr10g0310901 Helianthus annuus HOM05D003517 ORTHO05D009798 6.8e-66 255.0 166 79.5
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 9.8e-65 251.1 201 69.7
Hma1.2p1_0020F.1_g014220 Hydrangea macrophylla HOM05D003517 ORTHO05D009798 1.7e-64 250.4 136 91.2
TPR.G20538 Trifolium pratense HOM05D003517 ORTHO05D009798 5.9e-62 241.9 127 92.9
SEGI_36410 Sequoiadendron giganteum HOM05D003517 ORTHO05D009798 7.7e-62 241.5 262 55.0
CAN.G1109.3 Capsicum annuum HOM05D003517 ORTHO05D009798 2.5e-60 236.5 132 88.6
SHI35305 Sapria himalayana HOM05D003517 ORTHO05D009798 6.1e-59 231.9 177 70.6
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.6e-57 226.5 142 81.7
Zm00001eb438100 Zea mays HOM05D003517 ORTHO05D009798 2.4e-55 219.9 127 84.3
Zm00001eb438980 Zea mays HOM05D003517 ORTHO05D009798 2.4e-55 219.9 127 84.3
Zm00001eb439060 Zea mays HOM05D003517 ORTHO05D009798 2.4e-55 219.9 127 84.3
BolSC28t60424H Brassica oleracea HOM05D003517 ORTHO05D009798 9.1e-55 218.0 130 82.3
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.6e-54 217.2 138 80.4
Lalb_Chr22g0353801 Lupinus albus HOM05D003517 ORTHO05D009798 9.5e-52 208.0 120 85.8
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 2.0e-49 200.3 155 70.3
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 2.0e-49 200.3 155 70.3
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 2.0e-49 200.3 155 70.3
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 2.0e-49 200.3 155 70.3
Oeu013683.1 Olea europaea HOM05D003517 ORTHO05D009798 8.3e-48 194.9 176 61.9
BraSC48t46337Z Brassica rapa HOM05D003517 ORTHO05D009798 4.1e-47 192.6 149 74.5
EL10Ac7g18051 Beta vulgaris HOM05D003517 ORTHO05D009798 2.0e-46 190.3 142 69.7
Nitab4.5_0000172g2160 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.9e-46 188.7 127 75.6
PSO585G0042 Papaver somniferum HOM05D003517 ORTHO05D009798 3.3e-44 183.0 188 54.8
PSO063G7170 Papaver somniferum HOM05D003517 ORTHO05D009798 1.2e-43 181.0 188 53.7
Nitab4.5_0001152g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.1e-43 180.3 110 80.9
Nitab4.5_0000172g1110 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.8e-41 172.2 109 78.0
Nn1g09918 Nelumbo nucifera HOM05D003517 ORTHO05D009798 6.4e-40 168.7 88 90.9
TPR.G31549 Trifolium pratense HOM05D003517 ORTHO05D009798 1.9e-36 157.1 89 85.4
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.7e-35 152.5 140 60.0
Solyc10g045740.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 6.8e-34 148.7 98 73.5
Solyc11g030940.3 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.9e-32 143.3 91 76.9
HanXRQChr10g0302361 Helianthus annuus HOM05D003517 ORTHO05D009798 1.1e-31 141.4 110 65.5
Nitab4.5_0003945g0070 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.2e-30 137.9 81 82.7
SGA_v2.0_scaffold648G53338 Striga asiatica HOM05D003517 ORTHO05D009798 2.1e-30 137.1 74 85.1
Nitab4.5_0001152g0480 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.0e-29 133.3 186 44.1
Nitab4.5_0001152g1080 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.3e-28 129.4 94 75.5
CARHR287140 Cardamine hirsuta HOM05D003517 ORTHO05D009798 2.1e-27 127.1 80 80.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.0e-26 122.9 111 64.0
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.5e-22 109.8 58 89.7
Solyc11g030935.1 Solanum lycopersicum HOM05D003517 ORTHO05D009798 1.2e-19 101.3 101 60.4
Nitab4.5_0008059g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.6e-19 99.8 68 76.5
Lalb_Chr22g0353791 Lupinus albus HOM05D003517 ORTHO05D009798 1.7e-16 90.9 61 77.0
PSO339G1469 Papaver somniferum HOM05D003517 ORTHO05D009798 2.2e-16 90.5 96 52.1
PSO513G0171 Papaver somniferum HOM05D003517 ORTHO05D009798 2.2e-16 90.5 134 41.0
Dinv18903 Davidia involucrata HOM05D003517 ORTHO05D009798 5.4e-15 85.9 160 45.0
Nitab4.5_0000351g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.8e-14 82.0 61 67.2
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 3.1e-10 70.1 35 91.4
Nitab4.5_0001152g0970 Nicotiana tabacum HOM05D003517 ORTHO05D025894 1.2e-09 68.2 35 88.6
Medtr0030s0090 Medicago truncatula HOM05D003517 ORTHO05D009798 1.5e-09 67.8 36 88.9
Lj2g0009144 Lotus japonicus HOM05D000751 ORTHO05D000889 3.8e-08 63.2 37 81.1
CSS0018598 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 2.7e-06 57.0 45 60.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.6e-06 56.2 31 80.6
Nitab4.5_0006196g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.9e-06 55.5 45 66.7


User provided reference genes

Program Settings