Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 9.2e-107 390.2 191 100.0
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.0e-81 307.0 185 85.9
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 8.6e-81 303.9 186 81.7
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.1e-80 303.5 185 85.4
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 3.3e-80 302.0 185 83.2
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 3.3e-80 302.0 185 83.2
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 4.3e-80 301.6 192 79.7
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 4.3e-80 301.6 192 79.7
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 9.6e-80 300.4 182 83.5
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 9.6e-80 300.4 185 83.2
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 9.6e-80 300.4 185 83.2
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-79 300.1 185 84.3
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-79 300.1 185 84.3
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-79 300.1 185 84.3
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-79 300.1 185 84.3
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 3.6e-79 298.5 182 83.5
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 4.0e-78 295.0 182 82.4
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 4.0e-78 295.0 182 82.4
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 4.0e-78 295.0 182 82.4
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 5.2e-78 294.7 182 81.9
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 5.2e-78 294.7 182 81.9
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 5.2e-78 294.7 182 81.9
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.2e-77 293.5 185 83.8
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.6e-77 292.4 180 82.8
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.6e-77 292.4 180 82.8
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 2.6e-77 292.4 185 81.6
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 3.4e-77 292.0 182 82.4
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 3.4e-77 292.0 182 82.4
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 3.4e-77 292.0 182 82.4
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 3.4e-77 292.0 182 82.4
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 4.4e-77 291.6 185 81.6
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 5.8e-77 291.2 185 82.2
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 5.8e-77 291.2 185 82.2
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 9.9e-77 290.4 182 81.3
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 9.9e-77 290.4 182 80.2
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 1.7e-76 289.7 182 81.3
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.7e-76 289.7 182 80.8
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 2.2e-76 289.3 182 81.9
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 2.2e-76 289.3 182 81.9
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 2.2e-76 289.3 182 81.9
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 4.9e-76 288.1 182 81.9
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 4.9e-76 288.1 182 81.9
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 1.9e-75 286.2 182 81.9
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 1.9e-75 286.2 182 81.9
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 3.2e-75 285.4 182 80.8
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 5.4e-75 284.6 182 80.2
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 7.8e-74 280.8 182 80.2
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 1.7e-73 279.6 183 80.3
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 8.7e-73 277.3 183 78.7
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 3.3e-72 275.4 193 76.7
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 4.3e-72 275.0 182 76.9
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 5.6e-72 274.6 172 83.1
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 7.3e-72 274.2 183 78.7
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 2.8e-71 272.3 180 78.3
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.8e-71 272.3 173 83.8
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.4e-70 270.0 171 82.5
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 2.4e-70 269.2 181 77.3
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 9.3e-67 257.3 158 86.1
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 1.3e-65 253.4 166 81.3
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 8.1e-63 244.2 182 70.9
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 5.3e-62 241.5 157 79.0
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.5e-61 240.0 160 79.4
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 2.0e-61 239.6 158 79.1
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.9e-60 235.0 185 70.3
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 4.2e-59 231.9 160 75.6
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 1.3e-57 226.9 147 78.9
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 1.1e-56 223.8 169 74.0
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 9.6e-56 220.7 150 76.0
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 1.1e-51 207.2 131 84.0
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 9.3e-51 204.1 185 57.8
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 4.3e-48 195.3 135 80.0
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 2.5e-43 179.5 117 81.2
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 2.5e-43 179.5 182 57.7
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.2e-43 179.1 129 69.8
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 6.1e-42 174.9 182 58.8
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 1.9e-40 169.9 182 54.4
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.9e-40 169.9 182 54.4
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 5.7e-40 168.3 182 53.8
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 5.7e-40 168.3 182 53.8
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 4.1e-38 162.2 111 76.6
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 5.3e-38 161.8 179 54.2
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.3e-36 157.1 170 55.9
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-34 150.6 84 86.9
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.0e-33 147.5 107 74.8
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.8e-31 138.7 108 68.5
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.4e-30 136.3 108 67.6
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 4.1e-30 135.6 80 80.0
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 7.7e-29 131.3 69 89.9
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 7.7e-29 131.3 80 81.2
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 1.3e-28 130.6 107 67.3
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 1.3e-28 130.6 68 91.2
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 1.3e-28 130.6 68 91.2
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 5.0e-28 128.6 96 70.8
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.5e-27 126.3 78 79.5
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.2e-26 124.0 69 85.5
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 1.0e-25 120.9 69 84.1
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 8.8e-25 117.9 109 60.6
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 7.4e-24 114.8 69 76.8
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 9.7e-24 114.4 109 58.7
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-22 110.9 67 77.6
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 4.1e-22 109.0 185 36.2
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.6e-21 106.3 67 74.6
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 5.9e-21 105.1 70 74.3
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.7e-20 103.6 69 72.5
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 4.2e-19 99.0 67 73.1
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.5e-19 98.6 64 70.3
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.2e-18 97.4 63 68.3
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.6e-18 97.1 64 71.9
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 8.0e-18 94.7 66 75.8
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.2e-15 86.7 51 78.4
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.5e-13 79.3 49 75.5
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.1e-11 74.3 52 71.2
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.9e-11 73.6 76 57.9
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 7.2e-11 71.6 61 65.6
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 9.4e-11 71.2 42 81.0
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 4.7e-10 68.9 49 69.4
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.7e-10 68.9 66 56.1
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 4.7e-10 68.9 41 80.5
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 6.1e-10 68.6 54 70.4
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 8.0e-10 68.2 49 67.3
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 4.0e-09 65.9 58 67.2
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 8.8e-09 64.7 41 73.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 4.4e-08 62.4 33 84.8
Psat1g132440 Pisum sativum HOM05D002864 ORTHO05D007972 4.4e-08 62.4 31 96.8
ECA240G4469 Erigeron canadensis HOM05D000041 ORTHO05D015639 4.1e-06 55.8 66 45.5
DCAR_028368 Daucus carota HOM05D002864 ORTHO05D178399 9.1e-06 54.7 28 92.9


User provided reference genes

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