Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 0.0e+00 1660.2 807 100.0
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 885 64.1
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1126.3 853 65.7
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1111.7 856 63.7
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 852 64.0
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 852 63.8
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1092.4 849 62.7
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1091.3 851 62.3
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1086.6 851 62.0
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1086.2 854 62.3
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1085.1 747 70.0
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1080.9 851 62.0
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1080.5 886 60.7
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 851 62.7
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1076.2 849 61.7
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 850 61.6
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 1.7e-311 1072.4 850 61.5
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 2.2e-311 1072.0 856 61.9
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 2.8e-311 1071.6 854 61.5
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 1.6e-309 1065.8 850 62.1
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.6e-309 1065.8 850 61.9
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 2.7e-309 1065.1 855 60.7
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 4.6e-309 1064.3 849 61.2
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 6.0e-309 1063.9 851 61.9
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 1.0e-308 1063.1 851 62.4
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 3.0e-308 1061.6 862 60.8
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 6.7e-308 1060.4 850 60.5
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 1.1e-307 1059.7 854 61.1
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 1.1e-307 1059.7 858 61.7
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.9e-307 1058.9 748 67.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.5e-307 1058.5 864 60.6
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 2.5e-307 1058.5 834 61.8
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 3.3e-307 1058.1 821 63.7
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 7.4e-307 1057.0 874 60.6
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 4.8e-306 1054.3 815 63.7
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 4.0e-305 1051.2 851 60.9
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 5.3e-305 1050.8 852 59.7
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 1.5e-304 1049.3 971 56.1
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.5e-304 1047.7 850 60.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 5.8e-304 1047.3 851 60.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.5e-302 1042.0 855 60.8
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 9.3e-302 1040.0 851 59.6
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 9.3e-302 1040.0 852 60.6
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 6.0e-301 1037.3 857 59.6
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.3e-300 1036.2 863 59.7
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 5.7e-299 1030.8 857 60.0
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 2.8e-298 1028.5 852 60.7
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 1.8e-297 1025.8 856 59.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 1.8e-297 1025.8 851 59.6
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 9.0e-297 1023.5 852 59.5
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 1.2e-296 1023.1 852 59.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 3.4e-296 1021.5 853 58.3
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.7e-295 1019.2 853 58.4
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.2e-295 1018.8 850 57.2
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 2.9e-295 1018.5 852 59.5
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 2.5e-294 1015.4 853 58.7
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 2.5e-294 1015.4 849 59.7
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 3.2e-294 1015.0 854 57.3
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 4.6e-293 1011.1 857 57.8
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 3.9e-292 1008.1 875 58.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 5.1e-292 1007.7 862 58.4
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 5.1e-292 1007.7 852 57.6
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 7.4e-291 1003.8 857 57.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.3e-290 1003.0 747 65.7
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 2.2e-290 1002.3 859 57.6
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 6.3e-290 1000.7 846 57.4
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 5.9e-288 994.2 852 57.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.8e-287 991.5 850 57.1
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 5.0e-287 991.1 854 57.3
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.4e-286 989.6 850 57.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.2e-286 988.0 867 56.5
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 5.5e-286 987.6 848 57.2
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 7.2e-286 987.3 852 56.9
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 2.1e-285 985.7 852 56.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 3.6e-285 984.9 848 56.5
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 6.1e-285 984.2 854 57.0
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 7.9e-285 983.8 880 55.7
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 3.9e-284 981.5 852 56.7
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 6.7e-284 980.7 852 56.9
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 7.4e-283 977.2 853 56.4
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.7e-282 976.1 852 55.9
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 9.1e-281 970.3 828 56.8
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.0e-280 969.1 851 55.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 5.9e-280 967.6 855 57.1
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.7e-279 966.1 853 57.4
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.4e-278 963.0 886 54.5
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 2.5e-278 962.2 823 57.6
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 4.2e-278 961.4 866 55.2
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 4.7e-277 958.0 850 54.7
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.4e-276 956.4 854 56.0
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 4.4e-275 951.4 854 56.0
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.3e-274 949.9 808 57.9
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.5e-270 936.4 725 62.2
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.3e-268 929.1 750 58.3
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 6.7e-268 927.5 718 61.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.0e-267 926.0 774 57.2
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 2.4e-265 919.1 849 53.6
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.3e-265 917.9 766 56.5
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 9.1e-265 917.1 774 56.2
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 2.0e-264 916.0 784 56.8
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.7e-264 915.6 767 57.0
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 2.2e-263 912.5 771 57.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.5e-262 909.8 772 56.2
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 1.4e-260 903.3 771 56.8
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 5.2e-260 901.4 805 53.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 8.8e-260 900.6 776 56.1
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 1.3e-258 896.7 852 53.5
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.8e-257 892.9 802 54.7
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.1e-257 892.1 848 52.8
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 9.1e-257 890.6 863 50.8
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.0e-256 889.4 778 55.4
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.2e-253 880.2 748 57.2
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 3.6e-253 878.6 846 52.1
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 6.1e-253 877.9 662 61.6
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.1e-249 867.1 647 64.1
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 9.5e-246 854.0 773 54.9
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.5e-243 846.7 914 49.3
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 1.1e-233 813.9 806 50.7
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 8.3e-226 787.7 597 65.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.1e-212 742.7 769 48.8
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 7.8e-208 728.0 868 44.0
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.4e-201 707.2 797 47.2
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 7.4e-198 694.9 793 45.8
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 5.3e-196 688.7 822 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.5e-195 687.2 694 47.1
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 5.8e-195 685.3 822 42.1
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.8e-188 663.7 627 53.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 4.5e-179 632.5 657 51.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.0e-175 621.3 580 53.6
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 3.7e-173 612.8 772 43.8
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.1e-166 591.3 503 55.7
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.1e-166 591.3 481 59.3
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.8e-164 583.9 471 59.7
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.4e-163 579.7 435 62.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.6e-147 527.7 668 46.0
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.9e-145 520.8 429 57.3
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 8.3e-141 505.4 866 35.2
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.4e-132 477.2 512 51.4
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 9.2e-132 475.3 428 54.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 6.2e-120 436.0 435 52.9
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 5.2e-119 433.0 407 53.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.4e-116 424.1 328 61.3
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.4e-109 399.4 432 51.2
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 2.1e-104 384.4 388 52.6
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.4e-103 380.9 399 53.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.7e-98 364.8 746 33.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.4e-92 343.2 321 51.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 4.5e-78 297.0 292 52.4
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.9e-69 267.7 805 26.8
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 8.7e-66 256.1 202 63.9
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 3.6e-59 234.2 246 50.4
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.8e-58 231.9 524 30.2
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.5e-53 213.4 167 58.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 3.3e-49 201.1 100 86.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.2e-43 182.6 144 60.4
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 7.2e-36 156.8 180 45.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 4.8e-32 144.1 191 39.8
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.3e-24 119.4 86 64.0
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 7.7e-22 110.2 78 67.9
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 8.6e-21 106.7 130 47.7
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.5e-20 105.1 95 57.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.5e-20 105.1 83 61.4
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.0e-19 100.1 63 71.4
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.2e-17 96.3 78 62.8
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.0e-17 95.5 138 40.6
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 3.4e-17 94.7 84 51.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.4e-15 87.4 104 46.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 5.9e-14 84.0 97 45.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 7.8e-14 83.6 96 45.8
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 7.8e-14 83.6 39 89.7
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 2.3e-13 82.0 44 79.5
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 4.3e-12 77.8 44 84.1
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 2.3e-10 72.0 83 45.8
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 5.8e-09 67.4 45 66.7
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 8.3e-08 63.5 69 49.3


User provided reference genes

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