Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.2e-122 441.8 227 100.0
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.2e-92 343.6 223 78.9
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 8.7e-88 327.4 227 74.4
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 7.3e-87 324.3 227 74.0
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 7.3e-87 324.3 223 74.4
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 2.1e-86 322.8 223 74.4
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 2.1e-86 322.8 223 74.4
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 8.1e-86 320.9 251 68.1
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.1e-85 320.5 227 73.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.1e-85 320.5 230 73.9
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.5e-84 316.6 227 71.8
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.0e-84 316.2 206 77.2
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.4e-84 315.5 227 73.6
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 7.6e-84 314.3 226 70.8
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.7e-83 313.2 231 70.1
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.2e-83 312.8 227 71.8
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.8e-83 312.0 227 72.2
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 3.2e-82 308.9 227 71.4
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 8.7e-80 300.8 221 71.0
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.9e-79 299.7 227 70.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 9.6e-79 297.4 227 67.8
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.1e-77 293.9 220 68.2
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.4e-77 293.5 223 70.9
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 5.3e-77 291.6 212 69.8
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.5e-76 290.0 212 68.9
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.8e-75 285.4 227 67.0
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.7e-73 279.3 230 64.3
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 3.9e-72 275.4 231 65.8
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.5e-71 272.7 210 65.2
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 4.3e-71 271.9 213 67.1
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 5.7e-71 271.6 220 66.8
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 5.7e-71 271.6 229 65.1
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 5.7e-71 271.6 227 65.2
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 3.7e-70 268.9 230 62.6
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.1e-69 267.3 230 62.6
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.4e-69 266.9 226 65.0
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.4e-69 266.2 234 58.1
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 9.0e-69 264.2 230 60.0
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 5.8e-68 261.5 227 63.0
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.7e-67 260.0 230 61.3
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.2e-67 259.6 227 62.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 5.0e-67 258.5 227 57.7
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 8.4e-67 257.7 225 61.3
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.1e-66 257.3 227 57.7
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 1.1e-66 257.3 223 60.5
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 3.2e-66 255.8 226 60.6
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 3.2e-66 255.8 203 66.0
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.2e-66 255.8 191 69.1
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 4.2e-66 255.4 233 58.4
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 4.2e-66 255.4 233 57.5
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 9.3e-66 254.2 225 57.8
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 2.7e-65 252.7 273 52.7
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 6.1e-65 251.5 222 59.5
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 7.9e-65 251.1 211 61.1
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.3e-64 250.4 225 56.9
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.8e-64 250.0 227 57.7
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 3.9e-64 248.8 211 60.2
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 3.9e-64 248.8 233 57.5
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 5.1e-64 248.4 232 61.2
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.1e-63 247.3 204 62.7
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.5e-63 246.1 211 58.8
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 2.5e-63 246.1 227 55.9
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.6e-62 243.4 214 57.0
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 2.2e-62 243.0 227 55.5
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 2.2e-62 243.0 209 59.8
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 2.8e-62 242.7 163 77.9
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 3.7e-62 242.3 196 63.8
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 6.3e-62 241.5 242 53.3
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 6.3e-62 241.5 227 56.4
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 1.8e-61 240.0 233 54.5
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 5.3e-61 238.4 230 55.2
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 6.9e-61 238.0 227 55.9
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 6.9e-61 238.0 215 56.3
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.0e-60 236.5 227 55.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.0e-60 236.5 227 55.9
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.4e-60 235.7 234 55.6
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.5e-60 235.3 317 47.3
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.7e-59 233.4 234 54.7
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.2e-59 233.0 234 56.0
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 3.8e-59 232.3 235 54.5
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.0e-59 231.9 232 53.9
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 5.0e-59 231.9 216 58.8
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 4.2e-58 228.8 248 51.6
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 7.2e-58 228.0 234 54.7
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.1e-57 226.5 233 54.1
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.6e-57 225.7 205 62.0
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.6e-57 225.3 205 60.5
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.0e-56 222.6 227 56.4
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.1e-55 220.7 190 60.5
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.5e-55 220.3 191 61.3
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 4.8e-54 215.3 358 40.2
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 6.3e-54 214.9 182 62.6
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 6.3e-54 214.9 159 70.4
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.1e-53 212.2 212 56.6
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.2e-52 210.7 178 62.9
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.2e-52 210.7 269 47.6
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 2.0e-52 209.9 159 71.1
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-52 209.9 230 50.9
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 3.4e-52 209.1 227 48.9
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 4.5e-52 208.8 205 53.2
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 3.2e-50 202.6 219 50.7
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.7e-49 198.7 220 49.1
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 2.3e-48 196.4 131 73.3
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 3.9e-48 195.7 187 52.4
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.5e-47 193.7 201 49.8
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 7.4e-47 191.4 163 61.3
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 4.8e-46 188.7 227 48.9
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.8e-46 188.7 261 43.7
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 8.2e-46 188.0 210 51.9
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 2.4e-45 186.4 154 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 7.7e-44 181.4 213 46.9
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.3e-43 180.6 160 60.6
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.1e-41 173.3 252 44.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.8e-40 170.2 166 57.2
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 2.6e-39 166.4 113 73.5
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 7.5e-39 164.9 131 67.2
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.6e-36 156.4 213 40.8
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 2.1e-33 146.7 169 51.5
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.4e-32 144.1 223 41.3
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 8.3e-30 134.8 118 61.0
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.1e-29 134.4 140 51.4
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 3.1e-29 132.9 163 48.5
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.2e-28 131.0 162 46.3
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.9e-26 123.6 175 46.9
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.8e-24 117.1 218 37.6
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.3e-22 108.6 79 69.6
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 5.4e-21 105.5 219 36.5
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.6e-20 104.0 92 58.7
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 7.7e-20 101.7 101 54.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 2.3e-19 100.1 208 30.8
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.5e-18 96.7 213 33.3
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 5.2e-16 89.0 99 49.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.8e-16 88.6 175 37.7
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.2e-15 87.8 84 58.3
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 3.4e-15 86.3 214 31.3
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.3e-14 84.3 91 53.8
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.9e-14 83.2 58 70.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 3.5e-12 76.3 88 50.0
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 4.6e-12 75.9 88 50.0
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.0e-11 74.7 66 57.6
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.2e-09 67.8 62 64.5
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.8e-08 63.9 63 42.9
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 4.0e-08 62.8 201 29.4
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 6.8e-08 62.0 64 50.0
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 8.9e-08 61.6 83 43.4
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 2.6e-07 60.1 161 28.6


User provided reference genes

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