Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030324 Daucus carota HOM05D000179 ORTHO05D000107 2.8e-172 608.6 322 100.0
DCAR_002635 Daucus carota HOM05D000179 ORTHO05D000107 1.5e-85 320.5 325 62.2
Lj3A856T35 Lonicera japonica HOM05D000179 ORTHO05D000107 8.1e-47 191.8 325 50.2
DCAR_026844 Daucus carota HOM05D000179 ORTHO05D000107 2.4e-43 180.3 358 45.3
Thecc.02G298700 Theobroma cacao HOM05D000179 ORTHO05D000107 1.6e-39 167.5 374 42.2
CSS0018845 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 8.4e-36 155.2 359 42.1
CSS0050143 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 8.4e-36 155.2 359 42.1
MD13G1013000 Malus domestica HOM05D000179 ORTHO05D000107 6.0e-34 149.1 373 42.1
Gohir.A03G116200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 7.8e-34 148.7 338 40.2
QL03p041156 Quercus lobata HOM05D000179 ORTHO05D000107 1.0e-33 148.3 364 40.9
Gorai.005G158200 Gossypium raimondii HOM05D000179 ORTHO05D000107 8.7e-33 145.2 347 39.8
Gohir.D02G139000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.1e-32 144.8 338 40.2
DCAR_023527 Daucus carota HOM05D000179 ORTHO05D000107 3.3e-32 143.3 359 40.4
Gohir.A12G152900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 7.3e-32 142.1 338 40.5
Gohir.D12G156300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.6e-31 139.8 338 40.5
Dinv10873 Davidia involucrata HOM05D000179 ORTHO05D000107 4.8e-31 139.4 310 44.5
Gorai.008G168900 Gossypium raimondii HOM05D000179 ORTHO05D000107 4.8e-31 139.4 338 40.5
TWI74G1193 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 1.1e-30 138.3 340 40.9
Nn4g24783 Nelumbo nucifera HOM05D000179 ORTHO05D000107 4.0e-30 136.3 376 39.9
Duzib268G0575 Durio zibethinus HOM05D000179 ORTHO05D000107 9.0e-30 135.2 368 39.1
Dinv10875 Davidia involucrata HOM05D000179 ORTHO05D000107 7.6e-29 132.1 340 36.8
Duzib248G1292 Durio zibethinus HOM05D000179 ORTHO05D000107 2.9e-28 130.2 371 41.0
Manes.15G141400 Manihot esculenta HOM05D000179 ORTHO05D000107 1.4e-27 127.9 332 41.0
CDE04G2903 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.6e-26 124.4 329 38.0
Dinv03379 Davidia involucrata HOM05D000179 ORTHO05D000107 1.6e-26 124.4 313 39.6
Hma1.2p1_0131F.1_g060620 Hydrangea macrophylla HOM05D000179 ORTHO05D000107 6.0e-26 122.5 310 40.0
Lj6A726T39 Lonicera japonica HOM05D000179 ORTHO05D000107 6.0e-26 122.5 279 39.8
Manes.17G092200 Manihot esculenta HOM05D000179 ORTHO05D000107 6.0e-26 122.5 323 40.2
Prupe.1G341100 Prunus persica HOM05D000179 ORTHO05D000107 1.0e-25 121.7 378 37.0
Sabra10G0071700 Salix brachista HOM05D000179 ORTHO05D000107 5.1e-25 119.4 328 39.3
Potri.008G142500 Populus trichocarpa HOM05D000179 ORTHO05D000107 6.7e-25 119.0 326 40.2
Manes.15G141300 Manihot esculenta HOM05D000179 ORTHO05D000107 1.1e-24 118.2 354 38.1
CiPaw.05G164500 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.5e-24 117.9 341 39.9
Duzib251G0192 Durio zibethinus HOM05D000179 ORTHO05D000107 1.5e-24 117.9 376 36.4
Manes.17G092100 Manihot esculenta HOM05D000179 ORTHO05D000107 1.9e-24 117.5 325 39.1
VMungo1215G1467 Vigna mungo HOM05D000179 ORTHO05D000107 1.9e-24 117.5 349 39.3
CiPaw.05G164600 Carya illinoinensis HOM05D000179 ORTHO05D000107 7.4e-24 115.5 361 38.0
CDE07G1266 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.3e-23 114.8 352 36.1
Eucgr.B02626 Eucalyptus grandis HOM05D000179 ORTHO05D000107 2.8e-23 113.6 368 34.8
Aqoxy3G04182 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 4.8e-23 112.8 384 37.0
Sabra08G0107800 Salix brachista HOM05D000179 ORTHO05D000107 1.8e-22 110.9 310 38.7
Potri.010G099100 Populus trichocarpa HOM05D000179 ORTHO05D000107 2.4e-22 110.5 333 36.3
TAR374G0116 Trochodendron aralioides HOM05D000179 ORTHO05D000107 4.0e-22 109.8 375 34.7
FAN07G0120 Fragaria x ananassa HOM05D000179 ORTHO05D000107 6.9e-22 109.0 390 36.9
MBI06_g13410_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 9.0e-22 108.6 352 36.6
Atru.chr11.1023 Acer truncatum HOM05D000179 ORTHO05D000107 2.6e-21 107.1 330 37.9
Lalb_Chr02g0151961 Lupinus albus HOM05D000179 ORTHO05D000107 2.6e-21 107.1 366 35.2
Cpa.g.sc2.89 Carica papaya HOM05D000179 ORTHO05D000107 3.4e-21 106.7 379 35.1
Lj2g0018233 Lotus japonicus HOM05D000179 ORTHO05D000107 4.5e-21 106.3 362 35.9
Potri.008G142400 Populus trichocarpa HOM05D000179 ORTHO05D000107 7.6e-21 105.5 307 39.7
Sabra08G0107900 Salix brachista HOM05D000179 ORTHO05D000107 1.3e-20 104.8 322 38.8
Cpa.g.sc2.88 Carica papaya HOM05D000179 ORTHO05D000107 2.2e-20 104.0 282 37.2
Actinidia37473 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.9e-20 103.6 297 38.0
RcHm_v2.0_Chr4g0445671 Rosa chinensis HOM05D000179 ORTHO05D000107 2.9e-20 103.6 386 36.3
Ca_25728_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 3.8e-20 103.2 310 34.8
Lsat_1_v5_gn_5_35960 Lactuca sativa HOM05D000179 ORTHO05D000107 6.4e-20 102.4 317 37.2
Medtr1g094115 Medicago truncatula HOM05D000179 ORTHO05D000107 6.4e-20 102.4 344 36.0
FAN17G2110 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.2e-19 100.1 392 35.5
Lalb_Chr17g0338071 Lupinus albus HOM05D000179 ORTHO05D000107 1.2e-18 98.2 298 34.9
FAN22G1496 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.6e-18 97.8 390 33.8
TAR629G1590 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.7e-18 97.1 330 33.6
Actinidia12417 Actinidia chinensis HOM05D000179 ORTHO05D000107 3.5e-18 96.7 301 36.5
Phvul.003G008100 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 3.5e-18 96.7 336 36.3
CDE04G3196 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 4.6e-18 96.3 309 34.6
Atru.chr11.1022 Acer truncatum HOM05D000179 ORTHO05D000107 3.0e-17 93.6 362 34.5
Glyma.07G158000 Glycine max HOM05D000179 ORTHO05D000107 3.0e-17 93.6 360 35.8
FvH4_4g36050 Fragaria vesca HOM05D000179 ORTHO05D000107 5.1e-17 92.8 394 34.0
MBI08_g40158_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 5.1e-17 92.8 384 33.9
PSO782G0494 Papaver somniferum HOM05D000179 ORTHO05D000107 5.1e-17 92.8 408 34.8
Lalb_Chr10g0095201 Lupinus albus HOM05D000179 ORTHO05D000107 6.7e-17 92.4 313 35.5
Glyma.20G184000 Glycine max HOM05D000179 ORTHO05D000107 8.7e-17 92.0 351 34.8
Cfa015095 Carpinus fangiana HOM05D000179 ORTHO05D000107 1.5e-16 91.3 332 34.9
Lj5g0019938 Lotus japonicus HOM05D000179 ORTHO05D000107 2.5e-16 90.5 366 31.4
Potri.010G099200 Populus trichocarpa HOM05D000179 ORTHO05D000107 3.3e-16 90.1 334 35.9
vmacro10770 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 7.4e-16 89.0 326 35.0
CDE02G0975 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 1.3e-15 88.2 310 34.2
VMungo0720G1853 Vigna mungo HOM05D000179 ORTHO05D000107 1.6e-15 87.8 305 36.1
Thecc.02G298800 Theobroma cacao HOM05D000179 ORTHO05D000107 6.2e-15 85.9 352 34.9
Dinv08463 Davidia involucrata HOM05D000179 ORTHO05D000107 8.1e-15 85.5 176 46.0
Rhsim09G0079200 Rhododendron simsii HOM05D000179 ORTHO05D000107 1.1e-14 85.1 306 37.6
VMungo0720G3005 Vigna mungo HOM05D000179 ORTHO05D000107 1.4e-14 84.7 312 34.6
FAN12G3463 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.8e-14 84.3 393 33.3
Glyma.20G005800 Glycine max HOM05D000179 ORTHO05D000107 4.0e-14 83.2 360 32.8
Sabra10G0071800 Salix brachista HOM05D000179 ORTHO05D000107 4.0e-14 83.2 331 35.0
Gorai.002G169100 Gossypium raimondii HOM05D000179 ORTHO05D000107 6.9e-14 82.4 321 35.2
Ca_10534_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 1.2e-13 81.6 293 35.2
Gohir.A01G143900 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.5e-13 81.3 284 35.9
Oeu001138.1 Olea europaea HOM05D000179 ORTHO05D000107 2.0e-13 80.9 276 37.3
Oeu001139.1 Olea europaea HOM05D000179 ORTHO05D000107 2.0e-13 80.9 276 37.3
Oeu001140.1 Olea europaea HOM05D000179 ORTHO05D000107 2.0e-13 80.9 276 37.3
MELO3C022568.2 Cucumis melo HOM05D000179 ORTHO05D000107 5.8e-13 79.3 328 34.5
Gohir.D01G136800 Gossypium hirsutum HOM05D000179 ORTHO05D000107 5.8e-13 79.3 285 35.8
MSTRG.13656 Avicennia marina HOM05D000179 ORTHO05D000107 7.6e-13 79.0 348 32.8
CiPaw.06G056900 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.0e-12 78.6 263 38.4
Duzib268G1325 Durio zibethinus HOM05D000179 ORTHO05D000107 1.3e-12 78.2 361 35.5
Glyma.10G206600 Glycine max HOM05D000179 ORTHO05D000107 1.3e-12 78.2 339 33.0
Phvul.007G020900 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.3e-12 78.2 319 34.8
Psat6g181320 Pisum sativum HOM05D000179 ORTHO05D000107 1.3e-12 78.2 344 34.0
PSO063G6427 Papaver somniferum HOM05D000179 ORTHO05D000107 1.7e-12 77.8 421 32.1
CsaV3_5G012400 Cucumis sativus L. HOM05D000179 ORTHO05D000107 2.2e-12 77.4 328 34.1
Lj3C856G6 Lonicera japonica HOM05D000179 ORTHO05D000107 2.2e-12 77.4 308 32.5
CDE05G1784 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 6.5e-12 75.9 193 35.2
HPP92_005104 Vanilla planifolia HOM05D000179 ORTHO05D000107 6.5e-12 75.9 354 31.1
Haze_01591 Corylus avellana HOM05D000179 ORTHO05D000107 1.1e-11 75.1 335 32.5
Oeu044058.1 Olea europaea HOM05D000179 ORTHO05D000107 1.4e-11 74.7 319 33.2
QL03p041116 Quercus lobata HOM05D000179 ORTHO05D000107 3.2e-11 73.6 328 32.3
Oeu044057.1 Olea europaea HOM05D000179 ORTHO05D000107 5.5e-11 72.8 319 32.9
Duzib248G1497 Durio zibethinus HOM05D000179 ORTHO05D000107 1.2e-10 71.6 310 36.8
Phvul.007G099800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.2e-10 71.6 308 32.5
CAN.G458.9 Capsicum annuum HOM05D000179 ORTHO05D000107 2.7e-10 70.5 286 31.5
QL04p080275 Quercus lobata HOM05D000179 ORTHO05D000107 2.7e-10 70.5 328 32.0
Gohir.D12G156400 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.5e-10 70.1 288 33.7
TAR371G1178 Trochodendron aralioides HOM05D000179 ORTHO05D000107 3.5e-10 70.1 316 31.3
ECA246G1949 Erigeron canadensis HOM05D000179 ORTHO05D000107 4.6e-10 69.7 343 32.9
SHI04259 Sapria himalayana HOM05D000179 ORTHO05D000107 4.6e-10 69.7 327 32.4
TWI77G0459 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 6.0e-10 69.3 342 31.6
COL.COLO4_27535 Corchorus olitorius HOM05D000179 ORTHO05D000107 1.3e-09 68.2 137 41.6
Haze_01592 Corylus avellana HOM05D000179 ORTHO05D000107 1.8e-09 67.8 320 34.4
GSVIVG01010284001 Vitis vinifera HOM05D000179 ORTHO05D000107 8.7e-09 65.5 248 35.5
ClCG11G000740 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.1e-08 65.1 332 30.7
Cfa015094 Carpinus fangiana HOM05D000179 ORTHO05D000107 1.5e-08 64.7 354 33.3
MSTRG.2091 Avicennia marina HOM05D000179 ORTHO05D000107 1.9e-08 64.3 315 32.7
TPR.G9811 Trifolium pratense HOM05D000179 ORTHO05D000107 1.9e-08 64.3 307 30.3
Glyma.10G280000 Glycine max HOM05D000179 ORTHO05D000107 2.5e-08 63.9 300 36.7
Sed0004168 Sechium edule HOM05D000179 ORTHO05D000107 4.3e-08 63.2 336 32.4
Ciclev10004533m.g Citrus clementina HOM05D000179 ORTHO05D000107 7.4e-08 62.4 246 32.9
Thhalv10004022m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 7.4e-08 62.4 306 31.0
THA.LOC104805117 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 7.4e-08 62.4 300 29.7
A06p43810 Brassica napus HOM05D000179 ORTHO05D000107 9.6e-08 62.0 246 32.1
BraA06t27259Z Brassica rapa HOM05D000179 ORTHO05D000107 9.6e-08 62.0 246 32.1
Gohir.A12G153000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.7e-07 60.1 350 31.1
arahy.Tifrunner.gnm1.ann1.QV2KCV Arachis hypogaea HOM05D000179 ORTHO05D000107 8.2e-07 58.9 361 30.5
Manes.11G142900 Manihot esculenta HOM05D000179 ORTHO05D000107 8.2e-07 58.9 280 29.3
BcaB07g30713 Brassica carinata HOM05D000179 ORTHO05D000107 1.4e-06 58.2 289 30.4
BcaB07g30714 Brassica carinata HOM05D000179 ORTHO05D000107 1.4e-06 58.2 289 30.4
BcaC06g34080 Brassica carinata HOM05D000179 ORTHO05D000107 1.4e-06 58.2 245 31.4
BolC7t43806H Brassica oleracea HOM05D000179 ORTHO05D000107 1.4e-06 58.2 245 31.4
AT2G02080 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 1.8e-06 57.8 267 30.7
arahy.Tifrunner.gnm1.ann1.72FWH3 Arachis hypogaea HOM05D000179 ORTHO05D000107 2.4e-06 57.4 358 30.7
Peaxi162Scf00025g00051 Petunia axillaris HOM05D000179 ORTHO05D000107 2.4e-06 57.4 293 34.8
TWI74G0323 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 2.4e-06 57.4 338 31.1
C07p32910 Brassica napus HOM05D000179 ORTHO05D000107 3.1e-06 57.0 245 31.4
BolC9t55927H Brassica oleracea HOM05D000179 ORTHO05D000107 3.1e-06 57.0 298 31.2
Psat6g097680 Pisum sativum HOM05D000179 ORTHO05D000107 4.1e-06 56.6 301 32.2
BraA09t37980Z Brassica rapa HOM05D000179 ORTHO05D000107 6.9e-06 55.8 286 29.7


User provided reference genes

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