Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 0.0e+00 1082.4 544 100.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.7e-295 1016.9 544 94.9
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 2.6e-239 832.0 473 88.6
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.3e-227 792.3 494 77.3
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.5e-226 789.6 521 72.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.4e-224 783.1 563 70.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 2.4e-224 782.3 537 72.3
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.9e-224 780.8 494 76.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.6e-223 778.9 510 75.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.7e-222 776.2 495 75.4
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.2e-222 775.8 537 72.1
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.2e-222 775.8 471 78.1
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.8e-222 775.0 504 74.0
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 8.4e-222 773.9 471 78.1
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.4e-221 773.1 471 77.7
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.1e-220 769.2 490 74.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.1e-220 769.2 562 67.3
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.0e-219 766.9 475 77.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.8e-219 766.1 478 78.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.9e-219 765.0 472 77.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 3.9e-219 765.0 537 70.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 7.4e-218 760.8 537 70.2
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.8e-216 756.1 530 69.8
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.2e-215 753.4 498 74.5
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.2e-215 753.4 539 69.8
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.4e-215 751.9 529 70.5
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 5.8e-215 751.1 495 74.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.7e-214 749.6 487 74.5
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.9e-214 748.0 494 73.1
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 4.9e-214 748.0 483 74.9
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.4e-213 746.5 471 76.4
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.2e-213 745.3 530 69.8
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 4.2e-213 745.0 515 71.7
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 9.3e-213 743.8 496 73.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.6e-212 743.0 554 67.9
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.5e-212 741.9 515 70.9
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.8e-211 739.6 473 74.4
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.7e-211 737.6 511 71.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.1e-210 736.9 520 69.2
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.5e-210 736.5 476 72.9
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 2.5e-210 735.7 539 67.7
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 4.3e-210 734.9 503 71.2
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.3e-210 734.9 502 72.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 7.4e-210 734.2 467 75.2
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.3e-209 733.4 503 72.4
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.3e-209 733.4 538 69.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.1e-209 732.6 548 68.8
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.8e-209 732.3 471 73.5
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 8.2e-209 730.7 515 70.1
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 8.2e-209 730.7 562 66.7
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.4e-208 729.2 544 67.1
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.1e-208 728.8 520 68.1
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.2e-207 726.9 473 74.6
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 4.5e-207 724.9 518 69.3
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 7.6e-207 724.2 543 65.9
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.3e-206 723.4 490 73.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.2e-206 722.6 530 68.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 2.9e-206 722.2 466 74.2
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 6.5e-206 721.1 526 68.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.1e-205 720.3 467 73.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 9.3e-205 717.2 477 71.9
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-204 716.8 503 71.4
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.6e-204 716.5 469 71.6
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.6e-204 714.9 492 72.4
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-203 713.0 543 65.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.3e-203 712.6 492 69.1
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.3e-203 712.6 471 72.2
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 6.7e-203 711.1 459 74.9
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 8.7e-203 710.7 528 68.4
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.1e-202 710.3 545 67.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-202 710.3 473 71.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-202 710.3 473 71.7
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.5e-202 709.9 515 67.6
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 4.3e-202 708.4 473 71.5
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-201 706.8 473 71.2
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.3e-201 706.8 557 65.2
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.6e-201 706.4 546 64.7
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.8e-201 705.7 473 71.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 3.7e-201 705.3 519 66.7
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 6.3e-201 704.5 541 64.5
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.3e-201 704.5 605 60.7
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.1e-200 702.2 522 64.2
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 6.9e-200 701.0 499 69.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.0e-200 700.7 471 73.7
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 9.0e-200 700.7 544 64.0
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.0e-199 699.5 543 63.7
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.0e-199 699.5 550 63.5
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 3.4e-199 698.7 513 67.6
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.9e-199 698.0 467 72.6
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.9e-199 698.0 467 72.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.0e-198 697.2 479 71.0
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.5e-198 694.1 467 72.4
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.1e-197 693.7 515 66.0
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.5e-197 692.6 509 64.0
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.2e-197 692.2 485 69.7
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.4e-197 690.6 465 71.0
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.4e-195 686.8 459 72.3
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 6.7e-195 684.5 477 67.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.3e-194 681.8 492 67.7
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 4.3e-194 681.8 543 63.5
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.3e-193 680.2 505 67.5
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.7e-193 679.9 543 63.4
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.2e-193 679.5 462 70.3
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 2.8e-193 679.1 667 55.6
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.1e-192 677.2 502 64.3
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.8e-190 668.7 459 69.7
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 6.5e-190 667.9 523 63.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.9e-189 666.4 536 60.3
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-187 658.7 543 63.0
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 2.6e-186 656.0 472 68.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.0e-182 644.0 478 65.9
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.5e-181 639.4 536 62.7
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 8.0e-180 634.4 463 65.7
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.1e-176 624.0 494 66.8
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.2e-175 620.5 493 65.5
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.0e-171 605.5 366 79.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 6.8e-163 578.2 534 57.5
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.2e-162 577.4 363 75.8
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.8e-162 574.3 495 61.8
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 4.7e-156 555.4 391 67.5
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.0e-150 537.7 462 58.2
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.2e-148 530.8 470 56.0
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 7.5e-146 521.5 361 72.6
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 9.8e-146 521.2 362 69.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.9e-145 519.6 470 56.0
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.5e-141 504.6 551 51.4
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.2e-140 504.2 387 65.6
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.4e-136 490.7 381 66.7
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.2e-131 472.2 326 70.2
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.8e-122 442.2 289 71.6
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 7.3e-117 425.2 348 64.4
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 7.3e-109 398.7 472 47.2
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 6.2e-108 395.6 500 45.6
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 4.0e-107 392.9 278 68.0
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 7.6e-106 388.7 251 73.3
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.6e-103 380.9 258 72.9
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 7.9e-103 378.6 231 79.2
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 8.4e-97 358.6 217 76.5
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 4.6e-95 352.8 296 61.1
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-93 347.4 304 62.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.9e-93 347.4 219 74.0
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 6.9e-91 339.0 240 67.5
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 2.6e-90 337.0 454 41.9
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.5e-88 329.3 212 73.6
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.0e-86 323.6 198 77.3
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.9e-79 298.9 187 79.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 5.1e-78 296.2 274 52.6
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.5e-74 283.1 470 36.8
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 6.5e-73 279.3 189 72.5
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.2e-66 258.5 275 52.4
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.0e-65 253.1 501 32.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.8e-60 236.5 188 67.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 8.5e-57 225.7 159 67.9
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.8e-53 212.2 283 44.5
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.3e-49 201.8 147 68.7
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.6e-45 187.6 114 77.2
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.7e-41 174.9 126 61.9
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.6e-39 167.2 137 59.1
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.3e-38 164.5 124 61.3
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.4e-35 154.5 113 64.6
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.6e-34 150.2 153 52.9
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.5e-32 145.2 325 35.1
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 4.3e-32 143.7 88 76.1
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 6.2e-31 139.8 321 33.6
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.0e-31 139.4 80 82.5
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.1e-30 137.5 81 76.5
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 9.8e-29 132.5 103 67.0
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 8.3e-28 129.4 134 53.0
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.4e-27 128.6 76 78.9
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 9.2e-27 125.9 77 79.2
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 3.6e-23 114.0 84 63.1
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.0e-22 110.5 63 81.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 4.4e-21 107.1 91 58.2
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 4.4e-21 107.1 62 77.4
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 7.5e-21 106.3 83 65.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 9.8e-21 105.9 81 65.4
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.3e-20 105.5 58 79.3
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 2.2e-20 104.8 74 60.8
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 3.3e-16 90.9 55 72.7
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-15 89.0 64 57.8
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 3.2e-11 74.3 48 77.1
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-10 71.6 51 58.8
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.5e-10 70.9 129 36.4
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.0e-10 70.1 110 40.0
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.6e-07 62.0 54 55.6
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 3.6e-07 60.8 45 62.2


User provided reference genes

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