Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028972 Daucus carota HOM05D002484 ORTHO05D002541 4.6e-51 204.1 95 100.0
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 5.0e-21 104.4 94 51.1
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 8.8e-18 93.6 79 50.6
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 1.8e-15 85.9 87 49.4
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 3.1e-15 85.1 92 45.7
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 9.1e-15 83.6 87 43.7
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 9.1e-15 83.6 88 47.7
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 1.6e-14 82.8 81 48.1
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 4.5e-14 81.3 93 43.0
ECA236G2297 Erigeron canadensis HOM05D002484 ORTHO05D002541 7.7e-14 80.5 48 58.3
PSO302G0221 Papaver somniferum HOM05D018786 ORTHO05D002541 1.0e-13 80.1 90 43.3
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 1.7e-13 79.3 86 45.3
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 2.3e-13 79.0 83 42.2
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 2.3e-13 79.0 82 43.9
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 2.9e-13 78.6 48 60.4
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 2.9e-13 78.6 48 60.4
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 2.9e-13 78.6 86 41.9
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 3.8e-13 78.2 48 60.4
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 3.8e-13 78.2 48 60.4
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 3.8e-13 78.2 48 60.4
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 3.8e-13 78.2 48 60.4
TWI79G0221 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 3.8e-13 78.2 47 63.8
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 5.0e-13 77.8 86 41.9
ECA236G3870 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.5e-13 77.4 84 47.6
Lsat_1_v5_gn_7_90281 Lactuca sativa HOM05D002484 ORTHO05D002541 8.6e-13 77.0 48 64.6
TWI75G1456 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.1e-12 76.6 92 45.7
Lsat_1_v5_gn_7_90221 Lactuca sativa HOM05D002484 ORTHO05D002541 2.5e-12 75.5 86 41.9
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 9.5e-12 73.6 80 42.5
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 9.5e-12 73.6 48 56.2
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 9.5e-12 73.6 48 56.2
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 9.5e-12 73.6 48 56.2
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 1.2e-11 73.2 88 40.9
Lsat_1_v5_gn_7_90580 Lactuca sativa HOM05D002484 ORTHO05D002541 1.6e-11 72.8 61 49.2
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 1.6e-11 72.8 90 38.9
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 2.1e-11 72.4 76 43.4
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 2.1e-11 72.4 93 39.8
BolC8t49576H Brassica oleracea HOM05D002484 ORTHO05D002541 2.8e-11 72.0 76 43.4
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 3.6e-11 71.6 95 40.0
AT1G19610 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 3.6e-11 71.6 76 43.4
BcaB03g12908 Brassica carinata HOM05D002484 ORTHO05D002541 3.6e-11 71.6 76 43.4
BraA08t34910Z Brassica rapa HOM05D002484 ORTHO05D002541 3.6e-11 71.6 76 43.4
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 3.6e-11 71.6 91 41.8
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 3.6e-11 71.6 54 51.9
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 3.6e-11 71.6 92 41.3
Carub.0001s1915 Capsella rubella HOM05D002484 ORTHO05D002541 4.7e-11 71.2 84 40.5
Lsat_1_v5_gn_7_90700 Lactuca sativa HOM05D002484 ORTHO05D002541 4.7e-11 71.2 46 56.5
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 6.1e-11 70.9 59 52.5
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 8.0e-11 70.5 93 38.7
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 8.0e-11 70.5 88 36.4
HanXRQChr16g0505571 Helianthus annuus HOM05D002484 ORTHO05D002541 1.0e-10 70.1 85 42.4
Sp1g17450 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.8e-10 69.3 76 40.8
ECA236G0027 Erigeron canadensis HOM05D002484 ORTHO05D002541 2.3e-10 68.9 51 52.9
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 3.0e-10 68.6 67 44.8
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 3.0e-10 68.6 47 53.2
Thhalv10009242m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.0e-10 68.6 84 39.3
HanXRQChr04g0128041 Helianthus annuus HOM05D002484 ORTHO05D002541 4.0e-10 68.2 46 52.2
Solyc01g011435.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 4.0e-10 68.2 91 45.1
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 4.0e-10 68.2 87 39.1
ECA236G4765 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.8e-10 67.4 48 56.2
Nitab4.5_0000023g0340 Nicotiana tabacum HOM05D002484 ORTHO05D002541 6.8e-10 67.4 94 42.6
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 8.8e-10 67.0 81 39.5
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 8.8e-10 67.0 84 38.1
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.2e-09 66.6 85 42.4
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.2e-09 66.6 85 42.4
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.2e-09 66.6 91 38.5
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.2e-09 66.6 92 38.0
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 1.2e-09 66.6 60 46.7
ECA236G3295 Erigeron canadensis HOM05D002484 ORTHO05D002541 2.0e-09 65.9 81 40.7
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 3.4e-09 65.1 48 52.1
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 4.4e-09 64.7 94 34.0
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 4.4e-09 64.7 48 52.1
Psat4g203640 Pisum sativum HOM05D002484 ORTHO05D002541 4.4e-09 64.7 54 51.9
Thhalv10029442m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 5.7e-09 64.3 48 52.1
HanXRQChr16g0505531 Helianthus annuus HOM05D002484 ORTHO05D220526 7.5e-09 63.9 88 35.2
HanXRQChr16g0505541 Helianthus annuus HOM05D002484 ORTHO05D002541 9.8e-09 63.5 88 40.9
HanXRQChr16g0505561 Helianthus annuus HOM05D002484 ORTHO05D002541 9.8e-09 63.5 88 40.9
Lsat_1_v5_gn_7_90800 Lactuca sativa HOM05D002484 ORTHO05D002541 9.8e-09 63.5 47 46.8
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 1.3e-08 63.2 90 36.7
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 1.3e-08 63.2 90 36.7
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 1.3e-08 63.2 84 36.9
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 1.7e-08 62.8 47 48.9
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.7e-08 62.8 81 39.5
AL7G45400 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 2.8e-08 62.0 82 40.2
AT1G75830 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 4.9e-08 61.2 53 50.9
Carub.0002s2268 Capsella rubella HOM05D002484 ORTHO05D002541 4.9e-08 61.2 53 47.2
Carub.0002s2269 Capsella rubella HOM05D002484 ORTHO05D002541 4.9e-08 61.2 53 47.2
Carub.0002s2270 Capsella rubella HOM05D002484 ORTHO05D002541 4.9e-08 61.2 53 47.2
Carub.0002s2271 Capsella rubella HOM05D002484 ORTHO05D002541 4.9e-08 61.2 53 47.2
Carub.0007s3201 Capsella rubella HOM05D002484 ORTHO05D002541 4.9e-08 61.2 91 37.4
FAN20G0586 Fragaria x ananassa HOM05D002484 ORTHO05D002541 4.9e-08 61.2 87 37.9
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 4.9e-08 61.2 85 37.6
BcaB02g07045 Brassica carinata HOM05D002484 ORTHO05D002541 6.3e-08 60.8 53 49.1
BcaC08g43338 Brassica carinata HOM05D002484 ORTHO05D002541 6.3e-08 60.8 48 54.2
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 8.3e-08 60.5 68 39.7
CARHR069370 Cardamine hirsuta HOM05D002484 ORTHO05D002541 8.3e-08 60.5 53 49.1
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 8.3e-08 60.5 51 43.1
Sp5g30970 Schrenkiella parvula HOM05D002484 ORTHO05D002541 8.3e-08 60.5 59 45.8
AL2G35840 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.1e-07 60.1 53 49.1
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.1e-07 60.1 48 45.8
BcaC08g47321 Brassica carinata HOM05D002484 ORTHO05D002541 1.1e-07 60.1 53 49.1
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-07 60.1 85 37.6
C06p32330 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-07 60.1 53 49.1
C06p49790 Brassica napus HOM05D002484 ORTHO05D002541 1.1e-07 60.1 53 49.1
BolC6t38355H Brassica oleracea HOM05D002484 ORTHO05D002541 1.1e-07 60.1 53 49.1
Thhalv10019396m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-07 60.1 81 40.7
Lsat_1_v5_gn_7_90161 Lactuca sativa HOM05D002484 ORTHO05D002541 1.1e-07 60.1 48 50.0
BcaB05g24952 Brassica carinata HOM05D002484 ORTHO05D002541 1.4e-07 59.7 53 49.1
BcaC03g15629 Brassica carinata HOM05D002484 ORTHO05D002541 1.4e-07 59.7 53 49.1
A02p20270 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-07 59.7 53 49.1
C02p33630 Brassica napus HOM05D002484 ORTHO05D002541 1.4e-07 59.7 53 49.1
BolC2t09341H Brassica oleracea HOM05D002484 ORTHO05D002541 1.4e-07 59.7 53 49.1
BraA02t07061Z Brassica rapa HOM05D002484 ORTHO05D002541 1.4e-07 59.7 53 49.1
A07p41370 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-07 59.3 53 47.2
BraA07t31670Z Brassica rapa HOM05D002484 ORTHO05D002541 1.8e-07 59.3 53 47.2
Lsat_1_v5_gn_7_90181 Lactuca sativa HOM05D002484 ORTHO05D002541 1.8e-07 59.3 83 34.9
Nitab4.5_0005600g0020 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.8e-07 59.3 69 44.9
TPR.G11190 Trifolium pratense HOM05D002484 ORTHO05D002541 1.8e-07 59.3 48 50.0
A07p41390 Brassica napus HOM05D002484 ORTHO05D002541 2.4e-07 58.9 59 44.1
BraA07t31672Z Brassica rapa HOM05D002484 ORTHO05D002541 2.4e-07 58.9 59 44.1
Thhalv10019398m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.4e-07 58.9 59 45.8
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 2.4e-07 58.9 85 35.3
Nitab4.5_0000023g0330 Nicotiana tabacum HOM05D002484 ORTHO05D002541 2.4e-07 58.9 95 38.9
TPR.G17112 Trifolium pratense HOM05D002484 ORTHO05D002541 2.4e-07 58.9 48 47.9
BcaB02g07044 Brassica carinata HOM05D002484 ORTHO05D002541 3.1e-07 58.5 80 41.2
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 3.1e-07 58.5 48 47.9
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 3.1e-07 58.5 48 52.1
Sp5g30950 Schrenkiella parvula HOM05D002484 ORTHO05D002541 3.1e-07 58.5 59 44.1
BcaC08g45552 Brassica carinata HOM05D002484 ORTHO05D002541 4.1e-07 58.2 59 44.1
C06p32340 Brassica napus HOM05D002484 ORTHO05D002541 4.1e-07 58.2 59 44.1
Carub.0002s2274 Capsella rubella HOM05D002484 ORTHO05D002541 4.1e-07 58.2 53 45.3
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 4.1e-07 58.2 47 48.9
AL2G35830 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 5.4e-07 57.8 52 48.1
BcaC08g45554 Brassica carinata HOM05D002484 ORTHO05D002541 5.4e-07 57.8 59 45.8
BcaC08g45556 Brassica carinata HOM05D002484 ORTHO05D002541 5.4e-07 57.8 59 45.8
C06p32380 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-07 57.8 59 45.8
Carub.0002s2272 Capsella rubella HOM05D002484 ORTHO05D002541 5.4e-07 57.8 53 45.3
Carub.0002s2273 Capsella rubella HOM05D002484 ORTHO05D002541 5.4e-07 57.8 53 45.3
Medtr8g012785 Medicago truncatula HOM05D002484 ORTHO05D002541 5.4e-07 57.8 46 47.8
Medtr8g012805 Medicago truncatula HOM05D002484 ORTHO05D002541 5.4e-07 57.8 88 37.5
Aqoxy4G00457 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 7.0e-07 57.4 92 35.9
A07p28700 Brassica napus HOM05D002484 ORTHO05D002541 7.0e-07 57.4 81 40.7
BraA07t30510Z Brassica rapa HOM05D002484 ORTHO05D002541 7.0e-07 57.4 81 40.7
Thhalv10019395m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 7.0e-07 57.4 53 45.3
Aqoxy4G00455 Aquilegia oxysepala HOM05D002484 ORTHO05D002541 9.2e-07 57.0 48 47.9
CARHR069310 Cardamine hirsuta HOM05D002484 ORTHO05D002541 9.2e-07 57.0 53 45.3
CARHR069280 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.2e-06 56.6 52 46.2
AT2G26010 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.6e-06 56.2 80 38.8
A08p29750 Brassica napus HOM05D002484 ORTHO05D002541 1.6e-06 56.2 35 60.0
C08p19530 Brassica napus HOM05D002484 ORTHO05D002541 1.6e-06 56.2 35 60.0
CARHR069270 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.6e-06 56.2 80 40.0
CARHR216420 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.6e-06 56.2 46 47.8
Prupe.8G071600 Prunus persica HOM05D002484 ORTHO05D002541 2.0e-06 55.8 101 37.6
AT2G26020 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.7e-06 55.5 52 44.2
AT5G44420 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.7e-06 55.5 52 44.2
Duzib248G1325 Durio zibethinus HOM05D001795 ORTHO05D002541 2.7e-06 55.5 48 45.8
Thhalv10019394m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 2.7e-06 55.5 80 37.5
Thhalv10000662m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 3.5e-06 55.1 73 39.7
Thhalv10019399m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 4.5e-06 54.7 56 42.9
Actinidia25332 Actinidia chinensis HOM05D002484 ORTHO05D002541 5.9e-06 54.3 93 35.5
AT5G44430 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 5.9e-06 54.3 79 38.0
A07p41360 Brassica napus HOM05D002484 ORTHO05D002541 5.9e-06 54.3 52 42.3
BraA07t31669Z Brassica rapa HOM05D002484 ORTHO05D002541 5.9e-06 54.3 52 42.3
CARHR284300 Cardamine hirsuta HOM05D002484 ORTHO05D002541 5.9e-06 54.3 90 37.8
ECA236G0419 Erigeron canadensis HOM05D002484 ORTHO05D002541 7.8e-06 53.9 84 38.1
Medtr8g012800 Medicago truncatula HOM05D002484 ORTHO05D002541 7.8e-06 53.9 49 44.9
Thecc.08G031200 Theobroma cacao HOM05D002484 ORTHO05D002541 7.8e-06 53.9 47 44.7


User provided reference genes

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