Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028952 Daucus carota HOM05D003159 ORTHO05D003780 2.3e-122 442.2 220 100.0
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 6.4e-112 407.5 208 97.1
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 7.4e-92 340.9 194 83.0
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 2.1e-91 339.3 206 78.2
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 8.1e-91 337.4 194 82.0
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 1.4e-90 336.7 194 82.5
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 1.4e-90 336.7 190 82.6
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 5.3e-90 334.7 204 79.4
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 5.3e-90 334.7 194 82.5
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 5.3e-90 334.7 194 82.0
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 9.0e-90 334.0 196 79.6
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 4.9e-88 328.2 191 80.6
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 8.4e-88 327.4 197 78.2
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.1e-87 327.0 190 79.5
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 1.1e-87 327.0 191 80.6
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 1.1e-87 327.0 191 80.6
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 1.1e-87 327.0 206 74.8
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 1.4e-87 326.6 191 82.2
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 4.2e-87 325.1 191 79.6
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 5.5e-87 324.7 203 75.9
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 5.5e-87 324.7 206 75.2
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 7.1e-87 324.3 190 80.5
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 2.1e-86 322.8 191 79.6
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 3.5e-86 322.0 189 80.4
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 4.6e-86 321.6 196 77.0
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 4.6e-86 321.6 198 76.3
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 4.6e-86 321.6 190 80.5
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 4.6e-86 321.6 190 80.0
Cpa.g.sc162.3 Carica papaya HOM05D003159 ORTHO05D003780 6.0e-86 321.2 190 79.5
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.0e-86 321.2 191 79.1
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 6.0e-86 321.2 190 79.5
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 6.0e-86 321.2 190 80.5
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 7.9e-86 320.9 189 79.9
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 7.9e-86 320.9 189 79.9
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 1.0e-85 320.5 206 74.8
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.3e-85 320.1 207 73.9
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 1.3e-85 320.1 190 80.5
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.3e-85 320.1 206 72.8
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 1.8e-85 319.7 205 74.1
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 2.3e-85 319.3 190 77.4
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 2.3e-85 319.3 190 80.0
Actinidia06676 Actinidia chinensis HOM05D003159 ORTHO05D003780 3.0e-85 318.9 191 79.1
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 5.1e-85 318.2 196 77.6
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 5.1e-85 318.2 197 74.6
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 5.1e-85 318.2 190 78.9
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 6.7e-85 317.8 190 77.9
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 8.7e-85 317.4 197 74.6
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 1.1e-84 317.0 190 78.9
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 1.9e-84 316.2 197 76.1
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.9e-84 316.2 189 78.3
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 2.5e-84 315.8 197 76.1
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.5e-84 315.8 197 74.6
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.5e-84 315.8 197 74.6
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 2.5e-84 315.8 190 78.4
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 2.5e-84 315.8 190 78.4
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.5e-84 315.8 197 75.6
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 2.5e-84 315.8 190 77.4
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 4.3e-84 315.1 190 78.9
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 4.3e-84 315.1 190 79.5
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 4.3e-84 315.1 190 77.4
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 5.6e-84 314.7 190 77.4
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 9.6e-84 313.9 190 78.4
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.3e-83 313.5 207 71.0
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 2.1e-83 312.8 203 73.4
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 2.1e-83 312.8 190 77.9
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 2.1e-83 312.8 206 72.8
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 2.8e-83 312.4 198 72.2
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.8e-83 312.4 203 73.4
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 4.8e-83 311.6 207 72.0
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 4.8e-83 311.6 191 76.4
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 6.2e-83 311.2 190 75.8
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 6.2e-83 311.2 197 73.6
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 8.1e-83 310.8 190 76.3
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.4e-82 309.3 207 70.5
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 3.1e-82 308.9 203 72.9
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.3e-82 308.1 190 75.8
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 5.3e-82 308.1 191 75.9
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 5.3e-82 308.1 191 76.4
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 9.0e-82 307.4 203 72.9
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 9.0e-82 307.4 203 72.9
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.2e-81 307.0 195 75.9
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.2e-81 307.0 191 75.4
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 1.2e-81 307.0 191 77.0
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.5e-81 306.6 203 72.9
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 3.4e-81 305.4 195 75.4
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 3.4e-81 305.4 208 69.2
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 5.8e-81 304.7 203 72.9
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 7.6e-81 304.3 190 77.4
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 1.0e-80 303.9 207 69.1
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 1.3e-80 303.5 195 75.4
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 2.2e-80 302.8 203 71.9
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 2.2e-80 302.8 203 71.9
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 2.2e-80 302.8 189 76.2
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 2.9e-80 302.4 203 70.4
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 2.9e-80 302.4 203 70.4
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 4.9e-80 301.6 203 71.4
PSO782G2873 Papaver somniferum HOM05D003159 ORTHO05D003780 4.9e-80 301.6 203 70.0
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 6.5e-80 301.2 190 76.3
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 8.4e-80 300.8 190 76.3
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 8.4e-80 300.8 190 76.3
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.9e-79 299.7 233 64.4
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 2.5e-79 299.3 190 75.8
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 2.5e-79 299.3 190 75.8
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 3.2e-79 298.9 190 72.6
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.5e-79 298.1 233 63.9
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 7.1e-79 297.7 196 70.4
FAN12G0237 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.3e-79 297.4 233 63.5
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.6e-78 296.6 213 67.1
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 3.5e-78 295.4 191 72.8
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 1.0e-77 293.9 224 65.2
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 6.7e-77 291.2 185 76.2
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 8.7e-77 290.8 169 81.7
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.3e-76 288.9 222 64.0
CDE05G1140 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.3e-75 287.0 202 65.3
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 4.8e-75 285.0 194 67.0
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 1.4e-74 283.5 190 68.9
FAN12G4313 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.4e-74 283.5 171 76.6
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 7.6e-73 277.7 197 65.0
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 3.8e-72 275.4 257 55.3
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 7.2e-71 271.2 207 65.7
CSS0018975 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 9.3e-71 270.8 203 63.1
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 5.1e-69 265.0 197 64.0
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 1.1e-68 263.8 197 64.0
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.5e-68 263.5 204 60.8
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.9e-68 263.1 171 69.0
FAN11G2158 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.7e-68 261.5 213 61.0
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 6.3e-67 258.1 202 66.3
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 2.4e-66 256.1 194 62.9
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 4.1e-66 255.4 193 65.3
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 4.1e-66 255.4 171 67.3
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 1.2e-65 253.8 194 62.9
SHI06091 Sapria himalayana HOM05D003159 ORTHO05D003780 2.0e-65 253.1 171 69.0
CSS0009274 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 7.7e-65 251.1 173 68.8
Haze_20967 Corylus avellana HOM05D003159 ORTHO05D003780 1.0e-64 250.8 162 73.5
SEGI_17525 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 5.0e-64 248.4 172 66.3
Zm00001eb284760 Zea mays HOM05D003159 ORTHO05D003780 6.5e-64 248.1 171 65.5
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.0e-56 224.2 193 54.4
Ciclev10003992m.g Citrus clementina HOM05D003159 ORTHO05D003780 7.2e-55 218.0 209 56.0
FAN20G0704 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.6e-54 216.9 182 59.9
TPR.G10778 Trifolium pratense HOM05D003159 ORTHO05D003780 4.8e-51 205.3 121 80.2
FAN02G3581 Fragaria x ananassa HOM05D001720 ORTHO05D001813 3.1e-50 202.6 120 78.3
Peaxi162Scf00135g01116 Petunia axillaris HOM05D003159 ORTHO05D003780 1.1e-47 194.1 116 78.4
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 1.0e-45 187.6 193 50.3
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 5.2e-45 185.3 179 55.3
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.5e-44 183.7 190 53.2
Nn1g02653 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.5e-44 183.7 105 83.8
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 1.7e-43 180.3 192 47.9
AUR62033001 Chenopodium quinoa HOM05D003159 ORTHO05D044021 4.8e-43 178.7 161 59.6
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 5.3e-42 175.3 177 48.0
Lalb_Chr06g0166711 Lupinus albus HOM05D003159 ORTHO05D003780 9.4e-39 164.5 97 81.4
Lalb_Chr06g0166751 Lupinus albus HOM05D003159 ORTHO05D003780 9.4e-39 164.5 97 81.4
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 3.0e-37 159.5 117 67.5
Lalb_Chr06g0166741 Lupinus albus HOM05D003159 ORTHO05D003780 1.7e-35 153.7 97 71.1
FAN09G3226 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.0e-33 146.7 88 78.4
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 4.2e-31 139.0 184 42.9
Atru.chr2.868 Acer truncatum HOM05D003159 ORTHO05D003780 2.2e-27 126.7 99 68.7
Nitab4.5_0000261g0140 Nicotiana tabacum HOM05D003159 ORTHO05D003780 7.8e-25 118.2 103 58.3
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 1.9e-23 113.6 67 74.6
Sabra19G0025800 Salix brachista HOM05D003159 ORTHO05D003780 2.1e-22 110.2 70 71.4
Atru.chr2.869 Acer truncatum HOM05D003159 ORTHO05D003780 4.1e-18 95.9 56 78.6
AUR62010228 Chenopodium quinoa HOM05D003159 ORTHO05D003780 7.0e-18 95.1 73 61.6
RcHm_v2.0_Chr6g0278951 Rosa chinensis HOM05D003159 ORTHO05D003780 7.0e-18 95.1 86 53.5
RcHm_v2.0_Chr7g0214531 Rosa chinensis HOM05D003159 ORTHO05D003780 3.5e-17 92.8 91 50.5
Nitab4.5_0001462g0060 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.5e-12 77.4 51 66.7
FAN09G4428 Fragaria x ananassa HOM05D003159 ORTHO05D003780 8.3e-11 71.6 45 68.9


User provided reference genes

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