Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 9.6e-155 550.1 264 100.0
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 4.8e-90 335.1 263 63.9
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 6.3e-90 334.7 270 65.6
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 8.0e-85 317.8 267 62.2
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 8.0e-85 317.8 267 62.2
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 1.4e-84 317.0 261 61.7
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 8.8e-84 314.3 261 63.2
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 4.9e-82 308.5 263 60.1
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 6.3e-82 308.1 258 58.1
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 1.1e-81 307.4 277 59.6
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.4e-81 307.0 258 60.1
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 1.8e-81 306.6 261 59.4
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.4e-81 306.2 262 60.3
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 5.4e-81 305.1 260 60.0
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 9.2e-81 304.3 263 58.9
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 2.0e-80 303.1 261 59.4
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 2.7e-80 302.8 256 59.0
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 4.5e-80 302.0 255 60.8
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 5.9e-80 301.6 259 58.7
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 1.3e-79 300.4 262 58.8
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 1.3e-79 300.4 261 59.4
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 2.3e-79 299.7 270 56.3
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 2.9e-79 299.3 257 59.5
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 2.9e-79 299.3 260 59.2
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 3.8e-79 298.9 257 59.1
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 3.8e-79 298.9 265 57.4
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 3.8e-79 298.9 259 58.3
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 6.6e-79 298.1 262 59.5
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 1.5e-78 297.0 263 58.9
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.9e-78 296.6 270 60.4
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 2.5e-78 296.2 263 57.8
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 3.3e-78 295.8 261 59.8
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 5.6e-78 295.0 262 57.3
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 5.6e-78 295.0 263 56.7
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 5.6e-78 295.0 261 58.2
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 9.5e-78 294.3 262 56.9
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.2e-77 293.9 257 58.0
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.2e-77 293.9 257 58.8
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 1.6e-77 293.5 263 58.9
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 3.6e-77 292.4 253 59.3
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 3.6e-77 292.4 268 58.2
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 4.7e-77 292.0 265 56.2
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 1.8e-76 290.0 266 56.4
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 4.0e-76 288.9 256 57.0
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 5.2e-76 288.5 261 59.0
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 5.2e-76 288.5 265 55.5
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 8.9e-76 287.7 266 57.1
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 1.2e-75 287.3 265 56.2
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 2.0e-75 286.6 267 55.8
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 3.4e-75 285.8 264 57.2
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 4.4e-75 285.4 259 56.8
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 9.8e-75 284.3 252 57.9
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 1.7e-74 283.5 265 55.8
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 4.9e-74 282.0 261 57.5
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 8.3e-74 281.2 258 55.8
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 3.2e-73 279.3 269 55.0
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 4.1e-73 278.9 263 54.8
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 5.4e-73 278.5 253 56.9
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 7.0e-73 278.1 261 56.3
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 1.6e-72 276.9 245 59.6
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 2.7e-72 276.2 272 52.9
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 4.6e-72 275.4 260 55.8
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 4.6e-72 275.4 213 63.8
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 3.0e-71 272.7 259 55.2
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 3.9e-71 272.3 257 54.9
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 5.0e-71 271.9 274 52.2
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 1.5e-70 270.4 302 48.7
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 2.5e-70 269.6 266 55.6
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 9.5e-70 267.7 223 64.6
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 1.6e-69 266.9 260 52.7
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 2.8e-69 266.2 209 62.2
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 6.8e-68 261.5 276 51.1
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 4.4e-67 258.8 278 51.1
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 2.9e-66 256.1 188 64.9
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 2.9e-66 256.1 262 51.1
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 1.9e-65 253.4 231 58.9
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 7.0e-65 251.5 212 59.9
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.6e-64 250.4 258 50.0
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 2.0e-64 250.0 256 51.2
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 2.7e-64 249.6 185 65.4
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 1.0e-63 247.7 182 65.9
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 7.3e-62 241.5 259 48.6
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 8.1e-61 238.0 268 50.0
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 2.3e-55 219.9 201 62.2
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.5e-54 217.2 281 44.1
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 9.5e-54 214.5 208 56.7
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 9.5e-54 214.5 260 44.6
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.6e-53 213.8 132 72.0
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 8.1e-53 211.5 201 54.7
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.4e-51 206.1 203 57.6
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 9.9e-51 204.5 274 41.6
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 7.8e-48 194.9 195 56.9
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 1.0e-47 194.5 202 55.4
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.5e-46 190.7 256 46.9
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 1.9e-46 190.3 318 40.9
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 3.3e-46 189.5 263 43.3
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 1.5e-43 180.6 190 54.7
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 1.3e-39 167.5 127 62.2
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 2.4e-36 156.8 175 49.7
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 2.6e-35 153.3 157 52.2
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.9e-34 149.8 133 58.6
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 1.9e-33 147.1 169 52.1
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 1.2e-32 144.4 159 50.9
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.3e-31 141.0 166 53.0
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 7.4e-30 135.2 260 35.0
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 2.8e-29 133.3 161 49.1
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-26 124.4 107 50.5
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 3.8e-26 122.9 262 33.6
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 3.4e-19 99.8 177 33.3
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 5.8e-19 99.0 207 32.4
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.4e-17 94.4 64 64.1
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 5.5e-17 92.4 209 34.4
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.6e-16 89.4 72 56.9
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 2.3e-15 87.0 175 32.6
Peaxi162Scf00876g00218 Petunia axillaris HOM05D007105 ORTHO05D009304 8.5e-10 68.6 191 27.2
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 1.4e-09 67.8 203 28.6
PGSC0003DMG400029377 Solanum tuberosum HOM05D007105 ORTHO05D009304 1.2e-08 64.7 212 24.5
Solyc12g096230.2 Solanum lycopersicum HOM05D007105 ORTHO05D009304 1.6e-08 64.3 212 24.1
Sopen12g032090 Solanum pennellii HOM05D007105 ORTHO05D009304 1.6e-08 64.3 212 24.1
CAN.G947.23 Capsicum annuum HOM05D007105 ORTHO05D009304 1.8e-07 60.8 212 24.5
Nitab4.5_0006955g0010 Nicotiana tabacum HOM05D007105 ORTHO05D009304 3.9e-07 59.7 194 25.8
Migut.D00198 Erythranthe guttata HOM05D006806 ORTHO05D008448 3.3e-06 56.6 146 30.1
arahy.Tifrunner.gnm1.ann1.IELT58 Arachis hypogaea HOM05D006806 ORTHO05D008448 9.7e-06 55.1 137 29.2


User provided reference genes

Program Settings