Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 0.0e+00 1346.6 716 100.0
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 7.1e-253 877.5 716 71.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.4e-245 853.2 750 64.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 3.1e-240 835.5 723 63.5
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 5.5e-237 824.7 738 67.8
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 7.1e-237 824.3 723 66.0
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.7e-236 822.4 717 66.0
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 1.3e-235 820.1 718 65.6
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 3.0e-235 818.9 718 65.5
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 3.9e-235 818.5 718 65.6
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 5.1e-235 818.1 730 63.6
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 5.7e-234 814.7 725 65.1
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 2.1e-233 812.8 718 65.6
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 4.1e-232 808.5 719 64.5
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 9.0e-232 807.4 744 65.3
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 2.0e-231 806.2 733 63.4
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 7.6e-231 804.3 717 64.7
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 4.2e-229 798.5 727 61.3
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 3.5e-228 795.4 710 63.8
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 3.5e-228 795.4 723 65.1
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.8e-227 793.1 733 65.1
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.9e-226 789.6 719 63.8
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 5.7e-226 788.1 729 62.7
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.4e-224 782.7 739 64.8
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.7e-222 776.5 722 63.4
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 5.0e-222 775.0 731 59.4
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 7.2e-221 771.2 727 62.7
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.1e-220 769.6 739 58.6
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 3.9e-219 765.4 733 59.8
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 3.9e-219 765.4 741 59.4
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.5e-218 763.5 728 59.6
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 9.7e-218 760.8 732 61.9
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 9.7e-218 760.8 735 59.0
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.7e-217 760.0 729 59.1
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 2.8e-217 759.2 749 58.1
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 6.9e-216 754.6 725 61.0
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 3.4e-215 752.3 743 57.7
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 5.9e-215 751.5 725 58.9
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.3e-214 750.4 729 58.7
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 6.5e-214 748.0 744 58.2
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 4.2e-213 745.3 733 59.8
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 9.4e-213 744.2 720 58.8
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 3.6e-212 742.3 723 62.8
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.6e-212 742.3 738 59.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 6.1e-212 741.5 733 58.0
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 6.7e-211 738.0 736 57.6
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.1e-210 737.3 725 61.7
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 3.3e-210 735.7 732 58.2
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.3e-209 733.8 725 61.1
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.0e-207 726.5 736 62.2
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 1.7e-206 723.4 729 57.6
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 2.5e-205 719.5 739 57.6
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 7.2e-205 718.0 742 58.2
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 4.7e-204 715.3 741 57.0
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.8e-203 713.4 747 58.8
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 3.0e-203 712.6 744 57.0
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 4.0e-203 712.2 723 59.2
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 2.8e-201 706.1 730 57.5
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.1e-200 704.1 744 55.2
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 2.0e-199 699.9 718 58.5
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 4.5e-199 698.7 718 57.7
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 2.1e-196 689.9 719 57.7
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.6e-196 689.1 676 58.6
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 3.0e-195 686.0 720 61.5
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.8e-193 679.5 738 56.0
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 3.7e-193 679.1 675 61.2
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 3.7e-193 679.1 615 61.5
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 3.1e-192 676.0 715 57.8
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 3.5e-191 672.5 723 55.5
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 5.9e-191 671.8 740 55.5
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 1.3e-190 670.6 725 53.9
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 1.3e-190 670.6 731 58.5
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.9e-190 669.5 744 55.2
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 1.5e-189 667.2 724 54.8
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 5.5e-189 665.2 737 56.3
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 1.6e-188 663.7 723 57.8
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 8.0e-188 661.4 718 58.9
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 3.0e-187 659.4 723 54.8
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 6.8e-187 658.3 727 54.6
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 4.4e-186 655.6 752 57.0
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 5.7e-186 655.2 713 59.7
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 2.4e-184 649.8 729 56.5
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 3.1e-184 649.4 727 58.0
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 5.9e-183 645.2 729 54.3
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 2.3e-182 643.3 743 55.0
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 6.6e-182 641.7 740 54.2
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.3e-181 638.3 558 61.1
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 6.8e-179 631.7 724 54.6
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.2e-175 620.9 724 56.9
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 4.7e-172 609.0 721 51.7
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 1.5e-170 604.0 718 51.8
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 2.0e-170 603.6 718 51.8
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 1.3e-166 590.9 723 51.6
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 3.0e-166 589.7 718 51.1
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 8.1e-164 581.6 671 55.1
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 1.6e-159 567.4 586 56.8
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 1.2e-156 557.8 598 56.0
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 1.6e-156 557.4 607 53.9
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 2.1e-156 557.0 607 54.2
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 8.1e-156 555.1 745 49.5
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.4e-153 545.4 749 48.9
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.8e-148 530.0 576 54.0
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 2.2e-145 520.4 593 51.6
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 4.2e-144 516.2 596 53.7
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.9e-142 509.6 580 52.8
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.5e-141 506.9 520 56.7
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 2.4e-139 500.4 469 65.9
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 3.8e-129 466.5 625 48.2
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 5.5e-128 462.6 634 46.1
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 7.1e-128 462.2 625 47.5
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 3.5e-119 433.3 347 65.7
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 1.3e-116 424.9 327 70.3
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 2.8e-116 423.7 320 70.6
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 4.2e-112 409.8 325 66.8
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 9.4e-104 382.1 348 64.7
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 5.1e-102 376.3 424 52.6
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 2.6e-101 374.0 592 41.0
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 2.3e-94 350.9 354 57.9
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 6.1e-87 326.2 356 54.5
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 8.8e-86 322.4 838 32.3
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 3.3e-85 320.5 820 32.1
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 9.1e-75 285.8 369 49.6
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 3.4e-61 240.7 366 46.7
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 7.5e-61 239.6 286 50.3
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.0e-57 229.2 407 40.0
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-57 228.8 337 47.2
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.6e-53 214.5 193 61.1
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 3.4e-53 214.2 291 46.0
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 2.9e-52 211.1 139 78.4
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 9.9e-45 186.0 211 53.1
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.4e-43 181.4 125 76.8
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.4e-38 165.6 268 39.9
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.3e-36 159.1 217 42.9
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 6.4e-36 156.8 134 64.2
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 3.4e-29 134.4 129 58.1
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 3.5e-18 97.8 79 65.8
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.8e-17 95.5 143 62.2
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 7.4e-16 90.1 95 56.8
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 9.0e-14 83.2 406 22.9
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 6.9e-06 57.0 48 50.0
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 9.0e-06 56.6 55 49.1


User provided reference genes

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