Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 2.1e-66 255.8 152 100.0
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 3.9e-52 208.4 152 73.7
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 5.1e-52 208.0 150 85.3
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 3.3e-51 205.3 158 81.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 5.7e-51 204.5 120 87.5
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.7e-51 204.5 125 85.6
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.7e-51 204.5 125 85.6
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.3e-50 203.4 144 86.8
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.8e-50 202.2 149 81.9
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 8.2e-50 200.7 158 80.4
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 8.2e-50 200.7 158 80.4
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.1e-49 200.3 151 83.4
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-49 199.5 125 84.8
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-49 199.5 125 84.8
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 4.1e-49 198.4 128 81.2
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 4.1e-49 198.4 126 83.3
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 4.1e-49 198.4 152 82.2
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 6.9e-49 197.6 117 88.0
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 6.9e-49 197.6 124 84.7
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 9.1e-49 197.2 123 84.6
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 2.0e-48 196.1 125 84.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 2.6e-48 195.7 125 80.0
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.6e-48 195.7 124 80.6
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 5.9e-48 194.5 144 83.3
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 1.3e-47 193.4 126 81.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 1.3e-47 193.4 126 81.0
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.3e-47 193.4 125 80.8
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.7e-47 193.0 125 82.4
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.7e-47 193.0 126 81.0
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.9e-47 192.2 144 82.6
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 3.8e-47 191.8 122 82.0
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 6.5e-47 191.0 124 82.3
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 6.5e-47 191.0 127 78.0
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 8.5e-47 190.7 122 81.1
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.9e-46 189.5 119 81.5
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.9e-46 189.5 144 81.9
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.5e-46 189.1 119 82.4
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.2e-46 188.7 119 82.4
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 5.5e-46 188.0 119 80.7
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 5.5e-46 188.0 125 79.2
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.2e-46 187.6 119 82.4
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.4e-46 187.2 119 81.5
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 9.4e-46 187.2 148 72.3
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-45 186.8 124 77.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.6e-45 186.4 149 75.8
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.6e-45 186.4 117 82.1
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.6e-45 186.4 119 82.4
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.6e-45 186.4 119 81.5
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.6e-45 186.4 119 81.5
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.1e-45 186.0 123 77.2
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 2.1e-45 186.0 121 80.2
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 2.7e-45 185.7 120 81.7
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 3.6e-45 185.3 124 79.8
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 3.6e-45 185.3 124 81.5
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 4.7e-45 184.9 127 77.2
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 7.9e-45 184.1 149 74.5
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 7.9e-45 184.1 118 80.5
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 7.9e-45 184.1 127 75.6
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 7.9e-45 184.1 144 79.9
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 1.4e-44 183.3 119 79.8
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 2.3e-44 182.6 162 67.9
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 2.3e-44 182.6 122 77.0
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.3e-44 182.6 119 79.0
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.3e-44 182.6 119 79.0
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.3e-44 182.6 127 74.0
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.3e-44 182.6 120 76.7
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 2.3e-44 182.6 123 78.9
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 2.3e-44 182.6 146 74.0
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.3e-44 182.6 147 81.0
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 2.3e-44 182.6 124 77.4
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 3.9e-44 181.8 126 75.4
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 5.2e-44 181.4 119 79.0
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 6.7e-44 181.0 122 75.4
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 6.7e-44 181.0 120 75.8
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 6.7e-44 181.0 125 77.6
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.1e-43 180.3 123 77.2
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.0e-43 179.5 127 72.4
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 77.0
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 3.3e-43 178.7 142 75.4
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 3.3e-43 178.7 127 72.4
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 3.3e-43 178.7 123 76.4
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 4.4e-43 178.3 122 76.2
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 5.7e-43 177.9 128 74.2
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 5.7e-43 177.9 122 77.0
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 7.4e-43 177.6 116 76.7
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.3e-42 176.8 120 74.2
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.2e-42 176.0 124 72.6
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.7e-42 175.3 146 69.9
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 4.8e-42 174.9 122 73.8
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 4.8e-42 174.9 122 73.8
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 4.8e-42 174.9 122 73.8
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 4.8e-42 174.9 122 73.8
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 4.8e-42 174.9 144 70.8
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 6.3e-42 174.5 120 75.0
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 6.3e-42 174.5 146 67.1
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 8.2e-42 174.1 130 70.0
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.4e-41 173.3 147 78.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.8e-41 172.9 136 69.1
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 3.1e-41 172.2 123 73.2
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.6e-40 169.1 120 70.8
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.6e-40 169.1 120 70.8
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.6e-40 169.1 120 70.8
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 3.5e-40 168.7 120 72.5
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 3.5e-40 168.7 124 67.7
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.9e-40 167.9 120 70.0
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-39 166.0 119 69.7
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 5.0e-39 164.9 127 68.5
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 8.5e-39 164.1 119 69.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.9e-38 162.9 121 67.8
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 4.7e-37 158.3 121 65.3
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.0e-36 157.1 106 78.3
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 1.4e-36 156.8 121 64.5
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 2.3e-36 156.0 125 72.8
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 3.0e-36 155.6 190 51.6
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 6.7e-36 154.5 100 82.0
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 8.8e-36 154.1 100 83.0
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.3e-35 152.1 96 81.2
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.7e-34 149.8 93 84.9
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 2.2e-34 149.4 120 65.0
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.1e-33 147.1 99 78.8
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 9.1e-33 144.1 125 64.0
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.2e-32 143.7 117 62.4
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 5.9e-32 141.4 91 83.5
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 5.0e-31 138.3 121 58.7
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.6e-29 133.3 127 55.9
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.0e-28 130.6 128 53.1
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 4.0e-28 128.6 98 71.4
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 8.3e-26 120.9 121 51.2
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 2.0e-24 116.3 121 52.9
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 1.7e-23 113.2 79 72.2
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 2.2e-23 112.8 94 61.7
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 2.2e-23 112.8 94 61.7
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.8e-20 101.3 100 58.0
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 7.0e-17 91.3 65 72.3
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.7e-16 89.4 91 59.3
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 4.7e-13 78.6 52 71.2
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 3.4e-11 72.4 71 60.6
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 7.5e-11 71.2 84 53.6
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 7.5e-11 71.2 84 53.6
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.3e-07 60.5 47 66.0


User provided reference genes

Program Settings