Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.3e-108 396.4 198 100.0
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.4e-89 332.4 231 75.8
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 2.7e-85 318.9 198 78.8
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 2.3e-84 315.8 198 79.3
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.4e-81 306.6 198 76.8
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.4e-81 306.6 198 76.8
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 3.1e-81 305.4 195 76.4
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 5.3e-81 304.7 198 76.8
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 9.0e-81 303.9 199 74.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 9.0e-81 303.9 225 69.8
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 5.8e-80 301.2 198 77.8
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 6.4e-79 297.7 225 68.4
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.2e-78 295.4 230 67.4
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 9.3e-78 293.9 231 65.8
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.7e-77 292.4 231 65.4
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.7e-77 292.4 231 65.4
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 4.6e-77 291.6 205 72.7
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 4.6e-77 291.6 231 64.9
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.6e-76 287.7 222 67.6
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 6.6e-76 287.7 225 66.7
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 8.7e-76 287.3 224 66.5
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.5e-75 286.6 198 67.7
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 9.6e-75 283.9 248 62.5
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 2.8e-74 282.3 198 67.7
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 9.0e-73 277.3 198 68.2
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.5e-72 276.6 198 66.7
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 2.0e-72 276.2 197 67.0
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 4.5e-72 275.0 198 66.2
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.3e-71 273.5 199 68.3
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.7e-71 273.1 196 66.8
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 1.7e-71 273.1 229 63.3
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.7e-71 273.1 198 66.7
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 4.9e-71 271.6 198 65.7
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.4e-70 270.0 199 67.3
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.4e-70 270.0 196 65.3
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 4.2e-70 268.5 198 66.7
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 7.1e-70 267.7 197 68.5
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 7.1e-70 267.7 201 65.2
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.2e-69 266.9 196 65.3
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 2.1e-69 266.2 194 64.4
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.5e-69 265.4 201 64.2
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 3.5e-69 265.4 201 64.2
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 7.9e-69 264.2 198 64.1
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.3e-68 263.5 200 67.0
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.3e-68 262.7 198 66.7
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 2.3e-68 262.7 196 64.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.0e-68 262.3 202 64.9
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 3.9e-68 261.9 201 65.7
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 3.9e-68 261.9 200 66.5
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 5.1e-68 261.5 189 65.6
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 6.7e-68 261.2 190 64.7
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.1e-67 260.4 200 65.5
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 1.5e-67 260.0 193 63.7
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 4.3e-67 258.5 200 65.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.6e-67 258.1 200 62.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.4e-67 257.7 201 63.7
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 9.6e-67 257.3 201 63.7
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.3e-66 256.9 202 61.9
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.6e-66 256.5 198 65.7
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.6e-66 256.5 199 63.3
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.1e-66 256.1 200 63.0
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 2.8e-66 255.8 200 61.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.8e-66 255.8 200 65.0
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.8e-66 255.0 201 63.2
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 4.8e-66 255.0 194 63.4
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 4.8e-66 255.0 253 53.8
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.1e-65 253.8 200 61.0
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.8e-65 253.1 202 60.4
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.4e-65 252.7 193 64.8
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 6.9e-65 251.1 200 60.5
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 2.0e-64 249.6 192 63.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 4.5e-64 248.4 202 59.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 5.8e-64 248.1 200 59.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 7.6e-64 247.7 200 59.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.3e-63 246.9 200 62.0
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.7e-63 246.5 216 63.0
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.2e-63 246.1 183 66.1
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 3.8e-63 245.4 199 58.3
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 3.8e-63 245.4 202 61.4
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 3.8e-63 245.4 194 58.2
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 6.5e-63 244.6 202 58.4
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 6.5e-63 244.6 199 58.3
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 6.5e-63 244.6 202 59.4
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 8.4e-63 244.2 202 58.4
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.4e-62 243.4 200 58.5
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 3.2e-62 242.3 202 57.4
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.2e-62 242.3 194 59.8
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 3.2e-62 242.3 201 60.2
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 7.1e-62 241.1 199 57.8
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 7.1e-62 241.1 199 57.8
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 7.1e-62 241.1 202 57.9
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 7.1e-62 241.1 202 57.9
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 9.3e-62 240.7 191 63.9
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 1.2e-61 240.4 200 59.0
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 6.0e-61 238.0 202 55.9
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.0e-60 237.3 173 65.9
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.0e-60 237.3 151 77.5
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.3e-60 236.9 190 60.0
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.8e-60 236.5 191 58.1
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.0e-60 235.7 191 58.6
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.1e-60 235.0 191 58.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 6.7e-60 234.6 202 56.4
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 7.4e-59 231.1 193 58.0
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.6e-58 229.9 193 57.0
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.8e-58 229.2 193 57.0
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 3.7e-58 228.8 199 58.8
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.3e-58 228.0 198 62.6
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 3.1e-57 225.7 160 73.1
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 5.3e-57 224.9 200 53.5
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 4.5e-56 221.9 267 46.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.0e-55 220.7 169 60.9
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.5e-54 216.1 195 53.8
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.1e-53 213.0 193 60.6
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 6.1e-53 211.5 193 52.8
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.1e-53 211.5 189 60.8
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 6.1e-53 211.5 189 53.4
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.1e-51 207.2 195 52.3
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 5.7e-51 204.9 148 67.6
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.2e-50 203.0 146 68.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.2e-50 203.0 198 53.5
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.7e-50 202.2 195 49.2
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.5e-46 189.5 199 47.7
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.5e-46 189.5 199 47.7
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.6e-45 186.8 149 60.4
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 3.6e-45 185.7 144 63.2
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 4.6e-45 185.3 194 51.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 6.1e-45 184.9 143 63.6
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.8e-44 183.3 134 67.2
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 8.2e-42 174.5 152 60.5
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.0e-39 167.5 154 52.6
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 3.8e-39 165.6 195 41.5
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 9.4e-38 161.0 195 43.1
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.6e-37 160.2 191 50.8
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.8e-36 156.8 112 65.2
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 2.0e-35 153.3 175 50.9
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 4.4e-35 152.1 119 58.8
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.8e-34 149.4 198 42.9
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.2e-32 144.1 201 43.3
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.5e-32 142.5 115 60.9
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.5e-30 137.1 110 59.1
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.7e-29 132.9 114 58.8
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 8.0e-29 131.3 118 52.5
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 5.2e-28 128.6 195 32.8
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 4.4e-27 125.6 111 54.1
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.5e-27 124.8 86 67.4
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-26 123.6 113 57.5
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 4.7e-21 105.5 82 65.9
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.2e-18 96.7 57 84.2
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 6.3e-18 95.1 125 45.6
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 8.3e-18 94.7 203 29.6
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.8e-17 93.6 200 35.5
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 4.1e-17 92.4 204 31.4
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 4.5e-16 89.0 68 61.8
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.2e-14 82.8 59 66.1
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.6e-13 79.3 49 75.5
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 3.1e-09 66.2 49 67.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 8.6e-07 58.2 127 29.1


User provided reference genes

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