Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1651.0 850 100.0
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1261.1 882 74.1
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1259.6 882 74.9
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1243.8 887 74.0
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 881 73.9
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1221.5 856 74.5
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1219.5 841 76.1
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 879 72.8
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1213.7 879 72.7
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 878 72.8
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1209.1 873 71.2
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1206.4 854 73.7
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 853 74.1
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 862 73.0
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 847 74.6
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 847 74.5
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1197.6 884 71.4
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 878 72.0
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 855 73.7
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 881 71.5
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1194.1 883 71.1
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1193.7 861 73.2
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 868 72.4
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 834 74.1
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 866 72.6
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 883 71.2
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 874 72.1
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 960 67.3
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 856 72.8
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 869 71.8
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 933 67.6
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 894 70.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1184.9 869 72.0
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1183.7 872 72.8
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 871 71.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1182.5 863 71.4
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1181.8 920 68.9
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 859 72.5
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 911 68.3
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 881 69.4
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1172.5 880 70.3
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1172.1 826 73.8
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 890 69.6
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1170.6 909 67.5
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1170.6 879 70.8
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1170.2 894 70.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1169.5 883 70.6
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 884 70.0
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 907 68.5
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 881 70.5
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 893 69.5
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1166.8 879 70.4
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1166.0 870 70.2
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1164.4 876 69.3
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 867 70.4
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 906 67.5
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1162.1 907 68.5
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1161.4 874 69.9
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1160.6 913 67.4
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1157.9 864 70.9
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 918 67.8
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1156.7 841 71.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1154.0 867 70.1
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1153.7 880 69.0
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 918 67.9
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 855 70.2
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1147.1 831 72.9
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1144.8 841 71.5
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1144.4 879 68.6
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 868 69.6
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 858 69.3
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1141.7 933 65.7
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1139.4 881 68.4
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1139.4 886 68.8
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 884 69.3
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1136.7 884 68.3
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1134.0 874 69.5
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1126.3 905 67.3
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1125.9 826 73.2
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 927 65.8
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 918 66.0
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1123.6 909 67.4
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1122.5 909 67.3
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1121.7 902 66.2
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 894 68.1
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1117.1 819 71.8
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1116.3 909 67.1
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1112.1 887 66.7
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1110.9 884 67.2
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1107.4 899 66.3
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1106.3 902 66.0
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1105.5 924 62.8
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1104.0 1023 59.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1100.9 906 65.3
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1099.3 932 64.2
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1099.3 857 68.0
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1095.1 874 67.0
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1093.2 863 66.4
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1083.2 837 68.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1082.8 840 68.3
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1080.5 839 68.9
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1075.8 903 65.2
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.2e-310 1069.7 849 66.7
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 3.4e-310 1068.1 837 67.0
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 4.4e-310 1067.8 924 63.4
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 3.7e-309 1064.7 926 63.2
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.2e-307 1059.7 830 65.9
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 4.9e-301 1037.7 834 65.7
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 4.6e-299 1031.2 849 64.9
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 8.1e-296 1020.4 754 69.5
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 9.5e-289 996.9 833 62.2
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 2.0e-286 989.2 721 70.7
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 4.4e-286 988.0 896 61.7
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 5.4e-276 954.5 717 70.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 6.2e-272 941.0 680 74.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.1e-264 916.0 599 76.6
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 6.2e-264 914.4 881 59.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 9.9e-262 907.1 728 68.7
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.7e-261 906.4 951 55.3
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.3e-256 890.2 844 55.3
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 3.2e-252 875.5 878 55.0
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 8.2e-248 860.9 511 81.4
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 2.8e-240 835.9 847 54.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 9.4e-236 820.8 687 66.1
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 8.3e-184 648.3 630 58.7
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.9e-170 601.7 347 82.1
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.4e-167 594.3 373 76.9
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 4.3e-164 582.8 351 78.9
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 6.2e-163 578.9 350 78.3
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.4e-162 577.0 514 64.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.4e-161 573.2 456 65.8
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.1e-157 559.3 351 76.6
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.8e-147 526.9 523 59.5
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 3.2e-135 486.9 694 44.2
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.3e-133 481.5 894 36.9
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 3.9e-125 453.4 1024 34.7
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 3.3e-124 450.3 306 71.2
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 3.4e-113 413.7 298 69.8
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.0e-104 383.3 478 51.5
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-99 368.6 452 52.4
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 3.1e-98 364.0 600 41.2
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.0e-96 359.0 1053 30.4
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.9e-75 287.7 355 54.4
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.8e-70 271.2 164 76.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.5e-55 221.5 317 44.2
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 2.6e-44 184.9 104 83.7
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 7.8e-41 173.3 122 81.1
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.1e-37 162.9 107 72.9
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.2e-36 159.5 106 68.9
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 3.0e-32 144.8 92 77.2
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 4.3e-23 114.4 77 74.0
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.2e-19 102.1 61 77.0
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 3.0e-16 91.7 86 59.3
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.9e-15 89.0 102 60.8
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.8e-13 82.4 57 68.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.2e-12 79.7 45 80.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.2e-11 75.5 58 65.5
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.2e-10 71.6 53 67.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-09 69.3 97 42.3
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 4.6e-09 67.8 41 68.3
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.0e-08 66.6 47 72.3
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 2.3e-08 65.5 69 44.9
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 3.9e-08 64.7 94 44.7
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 5.1e-08 64.3 52 63.5


User provided reference genes

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