Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 6.5e-290 1000.0 487 100.0
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 6.2e-200 701.0 489 71.2
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.9e-191 671.0 489 68.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 4.8e-184 648.3 495 67.5
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-183 647.1 491 65.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-183 647.1 491 65.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.2e-182 643.7 489 63.8
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.6e-182 642.5 489 64.4
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.3e-181 640.2 493 65.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.8e-181 638.6 489 66.9
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.4e-180 636.7 398 79.6
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.7e-179 632.5 489 63.4
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 3.3e-177 625.5 489 64.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.3e-177 625.5 464 66.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 7.4e-177 624.4 489 63.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.2e-174 617.1 500 62.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.5e-174 616.7 492 63.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.0e-174 616.3 501 61.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.4e-174 615.5 492 63.2
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.5e-174 615.1 492 63.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.3e-173 613.6 489 63.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.9e-173 612.5 467 65.5
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 4.2e-172 608.6 474 65.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 9.3e-172 607.4 495 61.2
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.7e-171 605.9 498 62.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.0e-171 604.7 491 63.3
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.1e-168 596.3 464 66.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.8e-168 595.9 489 60.7
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.1e-167 592.4 422 68.2
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 5.3e-167 591.7 491 60.3
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.4e-166 589.0 491 59.9
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.0e-165 587.4 399 72.2
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.0e-165 587.4 557 56.7
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.5e-164 582.8 441 65.3
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.2e-164 582.0 491 61.5
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.3e-162 577.0 446 64.1
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.9e-161 573.2 404 69.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 5.7e-161 571.6 458 62.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.7e-161 571.6 446 63.2
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.3e-160 570.5 399 69.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.1e-159 567.4 460 60.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.4e-159 567.0 460 62.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.1e-159 565.8 460 60.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 9.1e-159 564.3 458 62.0
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-158 563.1 489 59.1
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.5e-158 562.0 495 59.8
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.9e-158 561.6 399 69.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 7.7e-158 561.2 485 59.0
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.3e-157 560.5 489 58.3
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 8.5e-157 557.8 474 58.4
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 4.2e-156 555.4 457 61.1
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 7.2e-156 554.7 456 61.6
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.2e-155 553.9 404 66.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.7e-155 552.7 519 58.0
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 6.1e-155 551.6 454 59.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-154 550.8 491 57.6
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.0e-154 550.8 457 60.8
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.0e-154 550.8 457 60.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-154 550.4 500 57.4
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.8e-154 550.1 517 58.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.3e-154 549.7 486 59.5
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.3e-154 549.7 479 58.5
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.9e-154 548.9 493 58.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.1e-154 548.5 455 59.1
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.1e-154 548.5 486 59.3
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.5e-153 547.0 491 58.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.5e-153 547.0 395 67.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.0e-153 546.6 459 61.2
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.0e-153 546.6 512 56.6
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 5.7e-153 545.0 456 61.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 5.7e-153 545.0 489 58.3
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.7e-152 543.5 410 66.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.7e-152 543.5 560 53.0
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.8e-152 542.0 398 66.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.4e-151 540.4 395 66.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 9.1e-151 537.7 425 63.3
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 9.1e-151 537.7 438 61.0
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.0e-149 534.3 417 63.5
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.2e-149 533.1 449 60.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.9e-149 532.7 497 57.5
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.0e-149 531.9 404 66.3
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 4.2e-148 528.9 553 53.2
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 7.2e-148 528.1 741 42.1
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 9.4e-148 527.7 489 56.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.2e-147 527.3 462 58.2
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.1e-147 526.6 417 64.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 7.9e-147 524.6 476 58.4
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 3.0e-146 522.7 455 58.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.0e-145 520.0 417 63.3
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.6e-145 519.6 486 55.8
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 4.1e-143 512.3 408 62.5
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.6e-142 509.6 482 53.7
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 7.7e-142 508.1 459 55.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 7.7e-142 508.1 459 54.7
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.0e-141 507.7 605 48.6
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 8.5e-141 504.6 492 54.1
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.4e-140 501.1 436 56.7
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.0e-139 498.0 444 56.1
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 8.0e-139 498.0 317 75.4
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.0e-138 496.1 473 54.1
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.6e-137 493.0 431 60.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.6e-137 493.0 430 60.2
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.2e-136 490.0 430 56.3
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.7e-136 489.2 483 54.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-135 487.3 431 60.1
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.8e-135 486.9 422 56.2
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-135 486.9 430 59.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.4e-135 486.5 404 58.2
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.3e-135 485.3 401 61.8
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.3e-135 485.3 439 54.9
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.3e-135 485.3 426 60.6
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.0e-135 485.0 389 63.5
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.2e-134 484.2 464 55.6
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-133 479.9 424 55.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-133 479.9 424 55.4
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.2e-133 479.9 424 55.9
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 3.8e-133 479.2 441 55.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.8e-133 479.2 481 53.2
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 6.5e-133 478.4 433 54.3
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-132 476.1 404 56.4
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.4e-130 470.7 381 58.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 2.3e-130 469.9 397 58.7
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-130 469.9 397 58.7
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 2.3e-130 469.9 397 58.7
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 3.0e-130 469.5 418 56.2
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.0e-130 469.5 432 54.4
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 4.4e-129 465.7 424 54.7
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 5.7e-129 465.3 343 64.1
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 9.8e-129 464.5 455 56.0
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-128 463.8 406 56.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 3.7e-128 462.6 394 58.6
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 4.8e-128 462.2 425 54.4
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.4e-127 460.7 479 51.4
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-127 460.3 479 51.4
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.1e-127 459.1 341 64.5
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.6e-126 457.2 404 55.7
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.5e-126 456.1 382 60.7
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-126 455.7 457 51.4
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 7.7e-126 454.9 442 52.9
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.1e-123 446.8 490 49.2
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.6e-121 439.9 377 59.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.1e-119 432.6 402 53.0
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.3e-112 411.0 403 51.6
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.4e-112 408.7 304 63.2
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.1e-111 407.9 385 51.4
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 3.2e-103 379.8 376 54.0
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.2e-91 341.3 338 53.3
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 9.6e-84 315.1 256 63.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-83 314.3 220 70.0
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.6e-75 286.6 224 66.1
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 6.4e-72 275.8 202 65.8
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.3e-69 267.3 279 49.8
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-67 261.5 198 61.1
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 5.5e-63 246.1 233 55.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.2e-62 245.0 311 44.1
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-56 223.8 413 39.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 9.0e-50 202.2 302 39.7
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.4e-42 177.6 430 31.2
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.8e-35 154.1 265 39.6
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-32 144.4 142 52.8
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.6e-30 137.1 284 30.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.4e-29 135.2 213 40.8
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 9.7e-28 129.0 642 22.7
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 9.7e-28 129.0 117 54.7
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.7e-27 128.3 144 52.1
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.3e-26 123.2 116 57.8
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.0e-24 119.0 99 61.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 5.2e-21 106.7 123 51.2
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.5e-15 86.7 104 49.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 4.0e-13 80.5 442 24.9
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.5e-09 67.4 231 28.1
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.9e-09 66.6 68 51.5


User provided reference genes

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