Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 1.3e-293 1012.3 512 100.0
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.0e-224 783.5 515 75.3
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 5.1e-221 771.2 515 75.0
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.1e-218 763.5 516 74.0
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 2.6e-217 758.8 529 72.6
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 1.9e-215 752.7 528 72.2
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 5.5e-215 751.1 515 73.2
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 9.4e-215 750.4 528 71.4
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 1.6e-214 749.6 515 71.8
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 2.1e-214 749.2 528 71.0
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 4.6e-214 748.0 528 72.3
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 7.9e-214 747.3 528 72.0
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.3e-213 745.7 515 72.0
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 2.3e-213 745.7 521 72.0
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.3e-213 745.7 515 72.6
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 3.0e-213 745.3 529 72.6
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.1e-212 743.4 515 72.4
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 5.7e-212 741.1 518 72.2
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 4.8e-211 738.0 519 72.6
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 2.4e-210 735.7 518 72.4
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 2.6e-209 732.3 506 73.1
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 3.4e-209 731.9 528 69.9
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 2.2e-208 729.2 534 68.5
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 2.9e-208 728.8 515 70.7
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 5.0e-208 728.0 516 70.5
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.1e-207 726.9 526 69.6
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 9.4e-207 723.8 518 70.3
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.1e-206 722.6 515 70.3
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 2.1e-206 722.6 515 70.1
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 4.7e-206 721.5 518 70.5
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 7.9e-206 720.7 515 70.1
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.4e-205 719.9 513 70.0
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 1.8e-205 719.5 517 69.8
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 2.3e-205 719.2 515 69.5
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 3.9e-205 718.4 519 70.3
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 5.1e-205 718.0 513 69.8
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 9.7e-204 713.8 528 67.6
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 1.7e-203 713.0 531 70.2
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 8.2e-203 710.7 513 69.0
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.1e-202 710.3 528 69.1
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.6e-201 706.4 513 67.6
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 1.6e-201 706.4 544 67.5
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.0e-201 706.1 529 68.2
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 7.7e-201 704.1 515 68.5
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.7e-200 703.0 516 68.6
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 2.2e-200 702.6 517 68.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 3.8e-200 701.8 517 68.5
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 5.0e-200 701.4 558 63.4
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 5.0e-200 701.4 568 63.9
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 1.5e-199 699.9 515 68.2
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 4.2e-199 698.4 505 68.3
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 9.4e-199 697.2 528 66.9
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 8.0e-198 694.1 530 67.0
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 2.3e-197 692.6 526 66.5
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 4.4e-196 688.3 514 66.3
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 1.7e-195 686.4 531 67.4
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 4.8e-195 684.9 516 67.2
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.8e-194 682.9 515 66.6
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.4e-194 682.6 513 66.7
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 3.1e-194 682.2 517 68.3
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 2.7e-193 679.1 539 64.4
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 3.5e-193 678.7 498 67.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 5.0e-192 674.9 517 66.5
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 6.5e-192 674.5 498 67.5
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.9e-191 672.9 485 69.9
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 5.2e-189 664.8 518 65.8
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 1.5e-188 663.3 518 65.6
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.6e-188 662.5 515 65.0
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.7e-187 659.8 515 63.5
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 6.3e-187 657.9 536 63.8
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 9.1e-186 654.1 515 64.3
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.2e-185 653.7 516 64.7
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 3.5e-185 652.1 469 70.1
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.3e-184 650.2 507 65.9
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 1.7e-184 649.8 538 63.2
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 1.7e-184 649.8 515 63.1
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.2e-184 649.4 517 63.8
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 6.5e-184 647.9 517 63.8
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 1.1e-183 647.1 517 63.8
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.2e-183 645.2 500 65.4
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 5.5e-183 644.8 509 64.8
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.1e-182 642.9 514 62.8
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 2.7e-182 642.5 514 63.8
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 3.6e-182 642.1 525 62.9
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.7e-182 641.7 502 64.9
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 1.8e-181 639.8 518 64.1
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.0e-180 636.3 527 62.2
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 3.4e-180 635.6 516 62.4
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.8e-179 632.5 527 62.0
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 3.7e-179 632.1 515 63.5
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 4.5e-177 625.2 512 61.5
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 4.5e-177 625.2 538 60.0
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.5e-175 620.2 528 60.6
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 3.6e-174 615.5 527 61.1
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 6.1e-174 614.8 515 63.7
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 3.0e-173 612.5 529 59.4
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-172 610.5 529 59.4
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 7.5e-172 607.8 531 60.3
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 9.8e-172 607.4 531 60.1
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 7.8e-169 597.8 513 61.0
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 3.9e-168 595.5 515 59.6
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.3e-167 592.4 432 69.9
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 9.8e-164 580.9 516 58.9
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 2.9e-163 579.3 515 58.1
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 2.5e-159 566.2 443 67.0
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 5.6e-159 565.1 517 56.7
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 3.5e-153 545.8 443 63.4
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.0e-152 544.3 474 61.8
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 4.4e-148 528.9 494 56.7
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 1.9e-135 486.9 356 70.8
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 4.8e-126 455.7 453 55.8
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 6.7e-120 435.3 393 60.3
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 1.5e-119 434.1 512 46.1
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.5e-116 424.1 528 45.6
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 2.0e-116 423.7 388 58.0
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.8e-109 400.6 506 43.1
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 7.7e-100 368.6 481 47.4
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 2.5e-98 363.6 436 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 3.9e-96 356.3 472 43.4
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 1.6e-60 238.0 139 82.7
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 9.2e-45 185.7 127 70.1
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.3e-38 165.2 134 63.4
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.9e-29 134.8 79 78.5
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 5.1e-27 126.7 258 34.1
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 2.0e-23 114.8 78 69.2
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 5.8e-23 113.2 73 74.0
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.1e-21 109.0 71 74.6
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-21 107.8 170 34.7
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 5.4e-21 106.7 104 56.7
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 3.0e-19 100.9 65 72.3
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 4.5e-15 87.0 250 29.2
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-10 72.0 53 58.5
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.5e-07 62.0 46 63.0
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 1.7e-06 58.5 137 29.2


User provided reference genes

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