Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022864 Daucus carota HOM05D008192 ORTHO05D010301 2.8e-52 208.4 108 100.0
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 7.4e-13 77.4 110 43.6
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 6.3e-12 74.3 74 54.1
CiPaw.07G230700 Carya illinoinensis HOM05D008192 ORTHO05D010301 1.4e-11 73.2 60 61.7
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 1.4e-11 73.2 111 42.3
QL02p018787 Quercus lobata HOM05D008192 ORTHO05D010301 1.8e-11 72.8 95 46.3
Cfa013043 Carpinus fangiana HOM05D008192 ORTHO05D010301 7.0e-11 70.9 94 43.6
CANSAT25G1276 Cannabis sativa HOM05D008192 ORTHO05D010301 1.2e-10 70.1 114 43.0
arahy.Tifrunner.gnm1.ann1.D8U9UB Arachis hypogaea HOM05D008192 ORTHO05D010301 1.6e-10 69.7 90 46.7
CSS0005628 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 1.6e-10 69.7 75 54.7
CSS0017566 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 1.6e-10 69.7 75 54.7
Migut.A00360 Erythranthe guttata HOM05D008192 ORTHO05D010301 2.0e-10 69.3 98 45.9
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 2.0e-10 69.3 74 52.7
Cpa.g.sc148.20 Carica papaya HOM05D008192 ORTHO05D010301 2.6e-10 68.9 75 48.0
Hma1.2p1_0389F.1_g142520 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 3.5e-10 68.6 75 52.0
RcHm_v2.0_Chr6g0299341 Rosa chinensis HOM05D008192 ORTHO05D010301 3.5e-10 68.6 78 48.7
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 4.5e-10 68.2 75 52.0
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 5.9e-10 67.8 74 55.4
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 5.9e-10 67.8 101 43.6
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 5.9e-10 67.8 59 61.0
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 5.9e-10 67.8 59 61.0
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 5.9e-10 67.8 60 60.0
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 5.9e-10 67.8 59 61.0
SalBow4G3126 Salvia bowleyana HOM05D008192 ORTHO05D010301 5.9e-10 67.8 74 51.4
Hma1.2p1_1685F.1_g297470 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 1.3e-09 66.6 75 52.0
AUR62032421 Chenopodium quinoa HOM05D008192 ORTHO05D010301 1.7e-09 66.2 93 44.1
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 1.7e-09 66.2 97 42.3
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 1.7e-09 66.2 97 42.3
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 1.7e-09 66.2 77 51.9
Gohir.A06G102100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 2.2e-09 65.9 93 46.2
Gorai.010G119200 Gossypium raimondii HOM05D008192 ORTHO05D010301 2.2e-09 65.9 93 46.2
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 2.9e-09 65.5 93 44.1
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 3.8e-09 65.1 63 54.0
Thecc.09G015000 Theobroma cacao HOM05D008192 ORTHO05D010301 3.8e-09 65.1 75 52.0
Atru.chr7.2557 Acer truncatum HOM05D008192 ORTHO05D010301 5.0e-09 64.7 63 57.1
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 8.5e-09 63.9 68 51.5
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 8.5e-09 63.9 93 45.2
Manes.03G008000 Manihot esculenta HOM05D008192 ORTHO05D010301 8.5e-09 63.9 98 42.9
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 1.9e-08 62.8 74 47.3
Cc04_g10610 Coffea canephora HOM05D008192 ORTHO05D010301 1.9e-08 62.8 112 37.5
Gorai.009G063500 Gossypium raimondii HOM05D008192 ORTHO05D010301 1.9e-08 62.8 68 50.0
Oeu032512.1 Olea europaea HOM05D008192 ORTHO05D010301 1.9e-08 62.8 90 44.4
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.9e-08 62.8 70 55.7
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 3.2e-08 62.0 54 61.1
Sc09g0010700 Simmondsia chinensis HOM05D008192 ORTHO05D010301 3.2e-08 62.0 69 52.2
Actinidia10524 Actinidia chinensis HOM05D008192 ORTHO05D010301 4.2e-08 61.6 75 45.3
Potri.006G264900 Populus trichocarpa HOM05D008192 ORTHO05D010301 4.2e-08 61.6 73 49.3
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 4.2e-08 61.6 96 41.7
arahy.Tifrunner.gnm1.ann1.XVGB1U Arachis hypogaea HOM05D008192 ORTHO05D010301 5.5e-08 61.2 108 40.7
Sabra06G0207000 Salix brachista HOM05D008192 ORTHO05D010301 5.5e-08 61.2 73 49.3
Gohir.D05G062401 Gossypium hirsutum HOM05D008192 ORTHO05D010301 7.2e-08 60.8 68 48.5
Peaxi162Scf00045g02027 Petunia axillaris HOM05D008192 ORTHO05D010301 7.2e-08 60.8 99 37.4
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 9.4e-08 60.5 63 52.4
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 9.4e-08 60.5 63 52.4
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 9.4e-08 60.5 62 51.6
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 1.2e-07 60.1 72 43.1
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 1.2e-07 60.1 77 46.8
Lalb_Chr24g0401951 Lupinus albus HOM05D008192 ORTHO05D010301 1.6e-07 59.7 57 50.9
Hund25618 Selenicereus undatus HOM05D008192 ORTHO05D010301 1.6e-07 59.7 96 38.5
Actinidia22286 Actinidia chinensis HOM05D008192 ORTHO05D010301 2.1e-07 59.3 74 44.6
Manes.16G130300 Manihot esculenta HOM05D008192 ORTHO05D010301 2.1e-07 59.3 67 49.3
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.7e-07 58.9 63 50.8
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 2.7e-07 58.9 72 47.2
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 2.7e-07 58.9 60 51.7
EL10Ac2g02493 Beta vulgaris HOM05D008192 ORTHO05D010301 3.6e-07 58.5 59 50.8
Ah.10g025590 Amaranthus hybridus HOM05D008192 ORTHO05D010301 8.0e-07 57.4 57 52.6
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 8.0e-07 57.4 96 36.5
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.0e-06 57.0 64 48.4
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 1.0e-06 57.0 74 44.6
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 1.0e-06 57.0 63 49.2
SGA_v2.0_scaffold147G36345 Striga asiatica HOM05D008192 ORTHO05D010301 1.0e-06 57.0 52 57.7
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 1.4e-06 56.6 95 34.7
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 1.4e-06 56.6 88 42.0
Peaxi162Scf01286g00122 Petunia axillaris HOM05D008192 ORTHO05D010301 1.4e-06 56.6 74 41.9
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 1.4e-06 56.6 95 36.8
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 1.8e-06 56.2 95 37.9
Nitab4.5_0000264g0200 Nicotiana tabacum HOM05D008192 ORTHO05D010301 1.8e-06 56.2 63 47.6
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 2.3e-06 55.8 75 45.3
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 2.3e-06 55.8 72 43.1
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 3.0e-06 55.5 88 44.3
Sed0007247 Sechium edule HOM05D008192 ORTHO05D010301 3.0e-06 55.5 75 42.7
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 4.0e-06 55.1 88 43.2
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 5.2e-06 54.7 81 42.0
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 5.2e-06 54.7 82 40.2
Glyma.17G223700 Glycine max HOM05D008192 ORTHO05D010301 5.2e-06 54.7 73 43.8
MD08G1055700 Malus domestica HOM05D008192 ORTHO05D010301 5.2e-06 54.7 76 44.7
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 5.2e-06 54.7 88 38.6
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 6.7e-06 54.3 94 35.1
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 6.7e-06 54.3 61 47.5
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 8.8e-06 53.9 60 46.7
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 8.8e-06 53.9 61 49.2
PGSC0003DMG400026278 Solanum tuberosum HOM05D008192 ORTHO05D010301 8.8e-06 53.9 67 43.3


User provided reference genes

Program Settings