Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 2.9e-230 801.6 420 100.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.3e-126 456.4 438 61.2
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.4e-122 442.6 451 58.5
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.2e-121 439.9 443 59.6
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.9e-120 436.8 443 56.9
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 7.1e-120 434.9 436 57.6
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 7.1e-120 434.9 438 61.4
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 6.0e-119 431.8 439 59.5
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.3e-118 429.9 434 58.1
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.9e-117 426.8 459 53.8
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.5e-117 426.4 440 55.7
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 3.3e-117 426.0 443 57.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 5.7e-117 425.2 452 59.1
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.7e-116 422.5 450 57.6
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 8.2e-116 421.4 456 59.0
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.4e-115 420.6 466 54.9
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 3.1e-115 419.5 437 57.9
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.3e-115 418.7 445 56.0
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 6.9e-115 418.3 399 64.4
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 6.9e-115 418.3 456 55.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.0e-114 416.8 444 55.9
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.6e-114 416.4 446 56.3
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.0e-113 414.5 447 57.9
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 6.5e-113 411.8 437 55.4
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.1e-112 411.0 437 57.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.1e-112 411.0 444 58.1
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 4.6e-111 405.6 465 52.9
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 4.6e-111 405.6 434 55.3
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 4.6e-111 405.6 445 53.9
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 3.0e-110 402.9 473 52.9
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.8e-108 396.4 440 54.3
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.8e-108 396.4 492 50.2
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.7e-108 396.0 470 52.8
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 6.3e-108 395.2 465 52.0
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.3e-108 395.2 444 53.8
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.4e-107 393.3 461 52.3
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.3e-107 392.1 461 52.3
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 6.9e-107 391.7 462 53.0
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.1e-107 391.3 461 51.8
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.2e-105 386.7 479 53.7
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.5e-105 385.2 483 52.4
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 6.5e-105 385.2 487 53.0
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 8.5e-105 384.8 439 57.6
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.1e-104 384.4 448 52.5
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.9e-104 383.6 447 55.7
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.5e-104 383.3 493 51.9
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.2e-104 382.9 480 52.3
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.2e-104 382.9 443 55.3
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 9.4e-104 381.3 434 57.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.2e-103 380.9 481 51.6
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.6e-103 380.6 480 52.1
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 1.6e-103 380.6 504 50.6
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 2.1e-103 380.2 453 52.5
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 3.6e-103 379.4 449 51.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 4.7e-103 379.0 487 53.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.0e-102 377.9 437 52.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.0e-102 377.9 472 53.6
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.8e-102 377.1 456 53.1
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.1e-101 374.4 479 49.5
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 2.0e-101 373.6 449 52.6
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.0e-101 373.6 405 58.0
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.6e-101 373.2 466 52.6
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 3.3e-101 372.9 440 53.0
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-100 370.9 480 51.9
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.3e-100 370.9 465 52.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.7e-100 370.5 442 53.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.8e-100 369.8 430 52.6
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.4e-99 366.7 443 51.5
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 9.1e-99 364.8 501 50.3
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.5e-98 364.0 508 47.2
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 5.0e-97 359.0 432 50.7
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 8.5e-97 358.2 462 52.4
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.1e-96 357.8 481 50.7
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.9e-96 357.1 441 51.7
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 7.2e-96 355.1 461 51.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 9.4e-96 354.8 449 50.3
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 4.7e-95 352.4 441 53.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 5.2e-94 349.0 463 50.5
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 5.2e-94 349.0 452 50.2
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.1e-93 347.8 444 49.8
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.5e-93 347.4 440 50.2
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.8e-92 343.2 436 50.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.6e-90 336.7 442 50.0
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.5e-90 336.3 438 50.9
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 5.9e-90 335.5 442 50.2
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 7.7e-90 335.1 464 49.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-89 334.3 442 50.0
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 3.8e-89 332.8 439 50.8
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 6.5e-89 332.0 438 49.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 9.4e-88 328.2 447 49.4
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.0e-86 323.2 452 48.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 5.7e-85 318.9 459 47.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 9.7e-85 318.2 448 47.3
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 9.7e-85 318.2 491 45.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 6.3e-84 315.5 448 47.1
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 3.1e-83 313.2 422 46.9
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 2.0e-82 310.5 441 48.5
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.9e-82 308.9 425 48.5
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 5.9e-82 308.9 449 46.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 3.8e-81 306.2 487 45.4
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.5e-80 302.4 445 45.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 7.2e-80 302.0 509 45.0
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 8.3e-76 288.5 494 42.5
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.8e-75 287.3 402 46.8
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.4e-75 287.0 400 45.8
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.5e-74 282.7 438 42.7
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.6e-71 273.1 451 41.9
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 8.9e-70 268.5 463 45.4
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 6.3e-68 262.3 420 42.4
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 8.3e-68 261.9 336 50.0
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.1e-67 259.6 502 38.8
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 9.2e-67 258.5 432 42.4
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.2e-66 258.1 192 71.4
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.7e-66 256.9 384 45.3
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 5.9e-66 255.8 468 40.2
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 2.9e-65 253.4 166 77.1
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 4.9e-60 236.1 295 51.5
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.9e-59 234.2 482 40.0
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.1e-56 224.9 457 38.3
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-56 224.9 187 65.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 9.8e-53 211.8 487 35.3
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 3.7e-52 209.9 371 42.6
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.9e-48 197.6 371 39.1
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.0e-45 187.6 130 70.8
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.9e-38 162.2 319 42.6
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.5e-37 161.4 170 54.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 4.9e-36 156.4 419 33.2
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.6e-32 142.9 220 41.8
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 9.6e-32 142.1 151 49.0
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 8.1e-31 139.0 145 47.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.4e-28 129.0 331 33.8
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.1e-26 124.4 386 32.4
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 3.3e-24 117.1 157 46.5
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.6e-24 115.5 96 60.4
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.2e-19 100.5 116 50.9
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 3.9e-17 93.6 53 83.0
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.6e-15 88.2 83 57.8
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 6.2e-15 86.3 99 49.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 6.2e-15 86.3 99 49.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-14 84.7 49 83.7
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 4.5e-13 80.1 92 52.2
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 6.4e-12 76.3 390 26.7
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 6.4e-12 76.3 390 26.7
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 6.4e-12 76.3 227 30.4
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-11 75.5 73 53.4


User provided reference genes

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