Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 0.0e+00 1162.5 592 100.0
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 4.5e-253 877.9 590 77.3
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 4.5e-253 877.9 590 76.1
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 8.2e-247 857.1 589 74.9
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 2.4e-246 855.5 590 73.7
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 1.0e-244 850.1 585 75.0
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.7e-244 849.4 585 75.9
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.9e-244 848.6 592 73.3
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 8.5e-244 847.0 589 74.4
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.5e-243 845.5 580 75.5
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.2e-243 844.7 592 72.8
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 7.2e-243 844.0 586 73.7
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 3.6e-242 841.6 585 73.8
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.4e-241 839.7 587 73.8
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.8e-241 839.3 587 73.3
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 8.8e-241 837.0 585 74.5
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 3.3e-240 835.1 586 74.4
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 2.2e-239 832.4 585 74.2
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 6.3e-239 830.9 590 72.2
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.4e-238 829.7 592 72.1
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 1.8e-238 829.3 589 72.5
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 7.0e-238 827.4 573 74.9
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 3.5e-237 825.1 588 71.6
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 4.5e-237 824.7 586 73.0
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.3e-236 823.2 592 72.0
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.7e-236 822.8 585 73.8
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.1e-235 820.1 588 70.6
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.2e-234 816.6 582 71.6
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 2.1e-234 815.8 588 70.6
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 8.0e-234 813.9 573 73.3
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.8e-233 812.8 586 71.7
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.8e-233 812.8 588 69.7
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.0e-233 812.0 589 71.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 6.7e-233 810.8 589 70.8
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 6.7e-233 810.8 595 70.8
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 2.6e-232 808.9 593 70.7
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 9.7e-232 807.0 586 71.5
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 4.8e-231 804.7 586 70.5
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 9.1e-230 800.4 592 69.8
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.0e-229 799.3 599 69.4
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 7.7e-229 797.3 584 70.7
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.0e-228 797.0 632 69.1
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 2.2e-228 795.8 649 66.1
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 2.9e-228 795.4 588 70.2
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 3.8e-228 795.0 587 70.0
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 6.5e-228 794.3 585 70.3
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.1e-227 793.5 588 69.7
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 6.1e-226 787.7 591 68.7
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 6.1e-226 787.7 582 72.5
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 2.6e-224 782.3 554 75.3
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 5.7e-224 781.2 592 68.8
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 5.7e-224 781.2 583 68.1
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 9.8e-224 780.4 572 69.9
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 1.3e-223 780.0 573 71.2
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 2.8e-223 778.9 592 68.9
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 6.3e-223 777.7 582 69.6
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 8.3e-223 777.3 590 69.0
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.8e-222 776.2 590 69.0
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 2.4e-222 775.8 590 69.0
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 3.1e-222 775.4 592 68.9
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.1e-222 775.4 590 68.0
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 4.1e-222 775.0 592 68.6
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 4.1e-222 775.0 590 68.8
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 9.1e-222 773.9 590 68.5
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 2.0e-221 772.7 592 68.2
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 2.7e-221 772.3 592 68.8
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 3.5e-221 771.9 588 68.9
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 7.7e-221 770.8 595 67.2
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 3.8e-220 768.5 574 69.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 4.7e-218 761.5 589 68.3
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 5.2e-217 758.1 586 66.7
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 7.5e-216 754.2 606 68.3
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 2.2e-215 752.7 574 68.5
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 2.8e-215 752.3 570 67.5
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 7.0e-214 747.7 612 65.0
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.6e-213 746.5 589 66.9
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.1e-211 740.3 590 65.8
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 5.6e-211 738.0 573 69.5
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 1.5e-208 729.9 627 64.9
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 2.6e-208 729.2 606 63.9
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 2.6e-208 729.2 589 65.0
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 1.7e-207 726.5 577 66.6
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 6.4e-207 724.5 585 65.3
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 6.6e-204 714.5 598 63.9
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 4.9e-199 698.4 587 62.2
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 4.1e-198 695.3 597 63.5
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 2.3e-188 662.9 531 66.1
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 1.7e-183 646.7 451 74.3
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 7.1e-182 641.3 710 52.7
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 6.0e-165 585.1 588 54.4
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.5e-163 580.5 451 67.2
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 6.0e-157 558.5 585 52.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.3e-153 545.4 584 52.7
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 4.6e-141 505.8 589 47.2
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 7.7e-136 488.4 580 49.5
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 2.2e-119 433.7 329 69.0
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.6e-109 399.8 294 71.4
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.0e-99 367.5 296 65.5
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 1.2e-91 341.7 222 77.5
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 4.1e-89 333.2 290 60.0
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 1.9e-78 297.7 195 77.4
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.5e-54 218.4 166 68.7
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.5e-54 217.6 299 48.5
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 7.9e-48 196.1 261 43.3
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 7.9e-40 169.5 147 56.5
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 5.3e-36 156.8 116 67.2
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 3.4e-35 154.1 141 59.6
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 4.2e-33 147.1 115 67.8
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.3e-33 146.0 141 57.4
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.6e-32 145.2 153 51.0
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 4.5e-27 127.1 185 46.5
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.0e-23 115.9 96 62.5
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 9.1e-20 102.8 121 48.8
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.7e-18 98.6 200 37.0
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.5e-17 93.6 210 34.3
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.2e-16 92.4 82 61.0
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.8e-13 80.5 142 41.5
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 3.1e-12 77.8 56 75.0
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.2e-11 75.9 212 31.6
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.3e-10 72.4 116 38.8
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 1.9e-09 68.6 45 68.9
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.9e-09 68.6 195 30.8
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 8.0e-08 63.2 37 83.8
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 5.2e-07 60.5 85 49.4
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 5.7e-06 57.0 116 33.6


User provided reference genes

Program Settings