Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 9.7e-97 357.1 216 100.0
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 6.4e-40 168.3 202 47.5
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.2e-32 143.3 216 43.1
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 3.8e-32 142.5 210 48.1
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.1e-31 141.0 204 42.6
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 4.2e-31 139.0 216 41.2
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 7.1e-31 138.3 203 42.4
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.2e-30 137.5 203 42.4
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 2.1e-30 136.7 209 42.1
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 2.7e-30 136.3 207 39.6
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 3.5e-30 136.0 214 41.1
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 4.6e-30 135.6 202 44.1
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 6.0e-30 135.2 202 54.0
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.0e-29 134.4 209 39.7
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 1.0e-29 134.4 216 39.8
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 2.3e-29 133.3 205 42.9
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 3.0e-29 132.9 203 39.4
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 6.7e-29 131.7 213 39.4
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 1.1e-28 131.0 203 38.9
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.1e-28 131.0 208 38.5
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.9e-28 130.2 202 40.6
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 1.9e-28 130.2 211 45.0
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.9e-28 130.2 208 38.9
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 2.5e-28 129.8 212 39.6
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 4.3e-28 129.0 204 40.2
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 4.3e-28 129.0 192 39.6
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 5.6e-28 128.6 202 38.6
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 7.4e-28 128.3 204 38.7
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 7.4e-28 128.3 213 41.3
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 9.6e-28 127.9 215 38.6
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.3e-27 127.5 216 39.8
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.3e-27 127.5 204 37.7
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 2.1e-27 126.7 209 38.3
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 2.1e-27 126.7 215 44.7
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.1e-27 126.7 211 39.3
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 3.6e-27 125.9 211 38.4
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 6.2e-27 125.2 192 45.8
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 6.2e-27 125.2 213 39.0
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 8.1e-27 124.8 197 35.5
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 8.1e-27 124.8 199 38.2
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.1e-26 124.4 201 37.8
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 1.4e-26 124.0 213 38.5
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 1.8e-26 123.6 184 40.2
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.4e-26 123.2 211 37.9
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 3.1e-26 122.9 213 45.5
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 5.3e-26 122.1 216 36.6
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 5.3e-26 122.1 213 38.0
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 1.2e-25 120.9 213 39.4
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.6e-25 119.8 209 38.3
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 4.5e-25 119.0 212 36.8
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 4.5e-25 119.0 193 38.3
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 5.8e-25 118.6 202 38.1
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.8e-25 118.6 210 38.6
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 7.6e-25 118.2 185 41.1
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 1.3e-24 117.5 233 36.1
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 1.7e-24 117.1 212 37.3
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 2.2e-24 116.7 194 38.7
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 2.2e-24 116.7 206 38.3
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 2.9e-24 116.3 211 37.0
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.9e-24 116.3 213 46.9
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 3.8e-24 115.9 221 37.6
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 6.4e-24 115.2 214 46.7
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 1.1e-23 114.4 203 37.9
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.1e-23 114.4 206 48.1
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.1e-23 114.4 212 37.3
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 1.4e-23 114.0 201 36.3
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 2.4e-23 113.2 212 37.3
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 2.4e-23 113.2 202 36.6
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 4.2e-23 112.5 211 33.6
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 5.5e-23 112.1 201 47.8
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 5.5e-23 112.1 202 36.1
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 5.5e-23 112.1 232 32.8
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 7.1e-23 111.7 214 47.2
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 7.1e-23 111.7 216 37.5
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 1.6e-22 110.5 214 47.2
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 3.5e-22 109.4 192 33.9
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 4.6e-22 109.0 244 35.2
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 7.9e-22 108.2 212 34.4
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 7.9e-22 108.2 213 35.2
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.3e-21 107.5 207 33.3
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 6.7e-21 105.1 201 38.8
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 6.7e-21 105.1 216 34.7
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 8.7e-21 104.8 210 34.8
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 8.7e-21 104.8 202 38.1
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 1.5e-20 104.0 212 45.8
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 1.9e-20 103.6 212 34.4
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.9e-20 103.6 206 35.9
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 1.9e-20 103.6 201 39.3
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 7.4e-20 101.7 211 42.2
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 9.6e-20 101.3 210 34.3
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 1.6e-19 100.5 210 46.2
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.8e-19 99.8 212 36.3
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 6.2e-19 98.6 203 33.0
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 1.1e-18 97.8 215 30.7
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.1e-18 97.8 217 31.3
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.4e-18 97.4 220 41.4
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 1.4e-18 97.4 209 42.1
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 1.8e-18 97.1 203 40.9
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.8e-18 97.1 210 32.4
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 2.4e-18 96.7 212 34.4
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 3.1e-18 96.3 209 42.1
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 3.1e-18 96.3 206 47.6
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 4.0e-18 95.9 213 42.7
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 6.9e-18 95.1 163 39.3
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 1.2e-17 94.4 205 41.0
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 1.2e-17 94.4 198 33.8
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 2.0e-17 93.6 221 41.2
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 2.6e-17 93.2 203 29.6
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.6e-17 93.2 211 31.8
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 4.5e-17 92.4 209 43.5
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 2.2e-16 90.1 213 40.4
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 3.8e-16 89.4 209 31.1
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 4.9e-16 89.0 214 41.6
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 4.9e-16 89.0 206 35.9
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 4.9e-16 89.0 155 37.4
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 8.4e-16 88.2 213 41.8
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 4.2e-15 85.9 181 39.2
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 7.1e-15 85.1 221 39.8
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 7.1e-15 85.1 221 39.8
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 7.1e-15 85.1 221 29.9
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 7.1e-15 85.1 213 31.9
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 2.7e-14 83.2 203 30.0
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 6.0e-14 82.0 222 41.0
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 6.0e-14 82.0 222 41.0
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 6.0e-14 82.0 203 30.0
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 7.9e-14 81.6 222 41.0
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 1.8e-13 80.5 216 30.6
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.8e-13 80.5 215 29.8
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 2.3e-13 80.1 191 38.7
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 6.7e-13 78.6 213 31.0
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 8.7e-13 78.2 229 31.9
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.5e-12 77.4 219 29.2
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 1.9e-12 77.0 213 29.1
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 3.3e-12 76.3 151 35.8
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 4.3e-12 75.9 205 29.8
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 9.6e-12 74.7 220 28.6
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.3e-11 74.3 220 30.9
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.3e-11 74.3 234 35.5
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 1.0e-08 64.7 67 49.3
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 8.5e-08 61.6 171 26.3
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 3.2e-07 59.7 193 23.8
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 7.2e-07 58.5 174 39.1
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 7.2e-07 58.5 79 44.3
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 1.2e-06 57.8 48 58.3
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 2.7e-06 56.6 62 46.8
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 6.1e-06 55.5 68 42.6


User provided reference genes

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