Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 0.0e+00 1440.6 723 100.0
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 5.9e-239 831.2 720 61.4
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 7.0e-232 807.7 719 58.7
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 7.7e-231 804.3 729 58.2
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 7.2e-229 797.7 725 57.1
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 4.7e-228 795.0 724 57.6
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.5e-226 790.0 729 57.8
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 3.4e-226 788.9 728 56.9
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 4.5e-223 778.5 721 57.1
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 1.0e-222 777.3 709 57.1
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.9e-221 773.1 709 56.8
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.0e-219 767.3 720 55.0
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.0e-219 765.8 713 56.4
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 6.8e-219 764.6 741 55.3
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.0e-218 763.1 713 56.0
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 6.3e-217 758.1 719 56.7
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 9.2e-216 754.2 715 55.5
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 4.5e-215 751.9 719 55.9
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 2.9e-214 749.2 730 55.1
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 2.5e-213 746.1 722 56.8
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 2.8e-212 742.7 722 56.0
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 3.6e-212 742.3 737 53.7
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 3.6e-212 742.3 724 55.9
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.2e-210 737.3 655 58.2
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.6e-207 726.9 680 56.3
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.0e-207 726.5 728 53.2
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 1.7e-206 723.4 726 53.4
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 8.6e-206 721.1 759 52.8
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 7.3e-205 718.0 654 57.3
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 8.9e-203 711.1 725 52.1
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 2.9e-201 706.1 734 51.6
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.1e-200 704.1 727 52.8
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 4.1e-200 702.2 717 53.1
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 7.0e-200 701.4 732 53.4
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 1.6e-199 700.3 734 51.4
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 2.0e-199 699.9 809 49.8
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 3.0e-198 696.0 722 50.1
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 5.0e-198 695.3 720 53.8
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 1.1e-197 694.1 726 51.4
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.9e-197 693.3 716 51.0
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.9e-197 693.3 713 51.1
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 3.3e-197 692.6 719 51.2
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 4.7e-196 688.7 724 51.0
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 3.1e-195 686.0 727 51.6
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 8.9e-195 684.5 720 53.1
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 2.4e-192 676.4 733 49.5
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.2e-191 674.1 770 50.4
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 3.5e-191 672.5 724 52.2
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 6.0e-191 671.8 708 50.8
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.0e-190 671.0 730 52.6
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 5.1e-190 668.7 725 49.0
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 2.5e-189 666.4 711 49.5
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 2.5e-189 666.4 802 47.0
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 4.3e-189 665.6 776 48.2
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 5.6e-189 665.2 775 48.3
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 3.6e-188 662.5 718 49.2
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 9.9e-186 654.4 711 48.5
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 6.4e-185 651.7 721 50.3
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 3.2e-184 649.4 716 49.0
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 7.1e-184 648.3 708 48.3
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 2.7e-183 646.4 646 50.9
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 6.0e-183 645.2 724 50.7
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.0e-182 642.9 707 49.9
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 8.6e-182 641.3 761 46.5
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.2e-180 637.5 764 45.9
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 1.1e-179 634.4 733 47.2
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 3.1e-179 632.9 714 48.0
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 4.0e-179 632.5 714 48.0
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 6.9e-179 631.7 725 47.2
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 8.9e-179 631.3 720 50.0
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 2.1e-172 610.1 694 48.3
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 4.8e-172 609.0 686 48.0
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.6e-167 594.0 687 50.5
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 3.5e-167 592.8 724 45.0
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 6.7e-166 588.6 714 45.5
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 8.7e-166 588.2 587 53.3
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 3.3e-165 586.3 705 46.7
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 2.1e-159 567.0 718 42.9
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.0e-150 538.1 724 44.8
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 4.2e-144 516.2 683 42.6
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.3e-141 506.1 560 50.5
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 4.1e-139 499.6 574 50.2
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.9e-137 493.4 443 59.4
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 7.4e-133 478.8 564 46.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 6.5e-129 465.7 511 48.5
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 2.5e-128 463.8 532 47.4
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 2.7e-127 460.3 450 54.2
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 8.2e-124 448.7 721 38.6
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 9.4e-120 435.3 583 44.8
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.7e-116 424.5 366 57.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 1.1e-115 421.8 436 52.3
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.0e-110 405.2 408 51.5
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 2.3e-110 404.1 539 43.2
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 3.0e-110 403.7 331 61.6
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 6.5e-105 386.0 352 58.2
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 4.1e-99 366.7 369 52.8
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 7.0e-99 365.9 705 32.9
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 5.9e-98 362.8 286 64.3
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 8.6e-97 359.0 327 55.4
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.8e-94 351.3 330 57.0
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 3.9e-89 333.6 371 47.4
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 4.3e-88 330.1 802 30.3
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.6e-87 328.2 922 28.5
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 1.6e-87 328.2 688 31.2
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 1.9e-83 314.7 340 49.4
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 5.0e-81 306.6 234 66.7
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 8.3e-76 289.3 507 38.9
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 8.6e-73 279.3 276 53.6
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.8e-71 274.2 247 59.1
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 4.6e-66 256.9 198 63.6
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 6.9e-62 243.0 262 47.3
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 2.6e-61 241.1 898 23.9
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.4e-59 234.6 160 71.2
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 2.1e-55 221.5 159 69.8
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 6.2e-55 219.9 706 28.3
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.3e-52 212.2 163 65.0
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 6.0e-50 203.4 716 27.8
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.3e-49 202.2 245 44.9
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.2e-45 189.1 135 70.4
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.9e-34 149.8 142 51.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 2.9e-28 131.3 141 50.4
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.0e-25 122.9 98 65.3
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 2.0e-24 118.6 167 42.5
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 7.4e-16 90.1 127 38.6
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 2.5e-11 75.1 159 32.7
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.7e-10 71.6 630 22.1
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 4.7e-10 70.9 181 29.3
arahy.Tifrunner.gnm1.ann1.DVH85A Arachis hypogaea HOM05D005820 ORTHO05D007116 6.7e-09 67.0 58 56.9
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.3e-08 64.7 35 80.0
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 1.4e-06 59.3 131 32.8
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 4.1e-06 57.8 47 55.3
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 9.1e-06 56.6 51 60.8


User provided reference genes

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