Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 2.8e-247 858.2 452 100.0
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.7e-64 250.4 216 63.4
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 6.0e-64 249.2 212 62.7
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 6.6e-63 245.7 217 60.8
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 8.6e-63 245.4 217 60.8
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 8.6e-63 245.4 217 60.8
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.9e-62 244.2 215 61.4
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.9e-62 244.2 210 63.3
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.5e-62 243.8 216 60.6
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 3.3e-62 243.4 216 61.1
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 7.3e-62 242.3 214 61.7
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 9.5e-62 241.9 215 60.9
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.6e-61 241.1 215 61.9
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 2.1e-61 240.7 216 60.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 1.4e-60 238.0 213 62.9
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.8e-60 237.7 222 58.1
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.8e-60 237.7 229 55.9
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 2.4e-60 237.3 213 59.2
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 6.8e-60 235.7 213 61.5
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.5e-59 234.6 223 58.3
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.4e-59 233.4 216 60.6
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 9.9e-59 231.9 212 60.8
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.3e-58 231.5 216 58.3
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.3e-58 231.5 225 57.8
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 1.7e-58 231.1 225 56.9
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 3.8e-58 229.9 214 61.2
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 4.9e-58 229.6 216 57.4
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 4.9e-58 229.6 217 58.5
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 6.4e-58 229.2 220 56.8
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 8.4e-58 228.8 217 59.4
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 8.4e-58 228.8 219 57.1
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 1.4e-57 228.0 191 66.0
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 2.4e-57 227.3 194 61.3
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 3.2e-57 226.9 223 55.6
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 7.1e-57 225.7 216 56.0
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 7.1e-57 225.7 217 56.7
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 7.1e-57 225.7 218 57.3
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 9.2e-57 225.3 208 58.7
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 9.2e-57 225.3 225 55.1
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 9.2e-57 225.3 215 57.7
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 1.6e-56 224.6 234 54.3
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.7e-56 223.8 214 60.3
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 4.6e-56 223.0 208 56.2
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 4.6e-56 223.0 210 58.1
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 6.0e-56 222.6 217 56.2
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 6.0e-56 222.6 180 65.6
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.0e-55 221.9 208 59.1
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 3.9e-55 219.9 216 57.9
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 6.6e-55 219.2 211 56.4
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.1e-54 218.4 211 55.5
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.5e-54 218.0 208 57.2
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 3.3e-54 216.9 218 54.1
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 4.3e-54 216.5 218 56.0
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 5.6e-54 216.1 216 56.9
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 5.6e-54 216.1 209 56.9
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 7.3e-54 215.7 212 56.1
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 7.3e-54 215.7 211 56.9
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 9.6e-54 215.3 211 55.5
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 9.6e-54 215.3 242 52.5
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 9.6e-54 215.3 211 54.5
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.3e-53 214.9 214 56.5
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.3e-53 214.9 216 55.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 1.3e-53 214.9 209 56.5
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.6e-53 214.5 217 55.8
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 1.6e-53 214.5 212 55.7
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.6e-53 214.5 146 72.6
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 2.8e-53 213.8 204 57.8
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 3.6e-53 213.4 214 56.1
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.6e-53 213.4 217 58.5
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 3.6e-53 213.4 231 53.2
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 4.8e-53 213.0 215 55.8
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 6.2e-53 212.6 217 55.8
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.1e-52 211.8 217 55.3
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 1.8e-52 211.1 216 55.1
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.4e-52 210.7 219 56.2
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 5.3e-52 209.5 194 56.7
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.3e-52 209.5 230 53.0
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.3e-52 209.5 232 53.4
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 6.9e-52 209.1 207 55.6
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 6.9e-52 209.1 207 55.6
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.5e-51 208.0 213 54.0
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.5e-51 208.0 212 54.7
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.0e-51 207.6 231 51.5
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.0e-51 207.6 219 53.4
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 2.0e-51 207.6 142 72.5
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 3.4e-51 206.8 232 51.3
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 4.4e-51 206.5 216 53.7
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 4.4e-51 206.5 221 52.5
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 4.4e-51 206.5 215 52.1
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.4e-51 206.5 232 50.9
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 5.8e-51 206.1 160 65.0
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.3e-50 204.9 216 51.9
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 1.7e-50 204.5 219 52.5
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.7e-50 204.5 237 50.2
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.7e-50 204.5 214 53.7
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 6.4e-50 202.6 207 55.1
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 6.4e-50 202.6 184 57.6
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 8.4e-50 202.2 187 56.7
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 1.1e-49 201.8 216 51.4
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.1e-49 201.8 213 55.4
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.9e-49 201.1 210 51.9
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.4e-49 200.7 216 51.4
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 5.4e-49 199.5 195 54.9
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 9.3e-49 198.7 187 56.1
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.7e-48 197.2 200 53.0
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 4.6e-48 196.4 195 53.8
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 6.0e-48 196.1 195 55.9
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 7.8e-48 195.7 221 50.2
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-47 195.3 189 56.1
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.3e-47 194.9 209 53.1
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 3.0e-47 193.7 227 50.7
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 3.0e-47 193.7 220 51.8
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 3.9e-47 193.4 194 55.2
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 3.9e-47 193.4 195 53.3
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 5.1e-47 193.0 206 51.5
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 8.7e-47 192.2 140 68.6
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.5e-46 191.4 197 52.8
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 1.9e-46 191.0 140 67.1
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 4.3e-46 189.9 196 50.5
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 2.8e-45 187.2 196 50.0
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 6.2e-45 186.0 196 50.5
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 2.4e-44 184.1 122 76.2
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.4e-44 184.1 225 49.3
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 4.0e-44 183.3 180 56.7
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 5.8e-43 179.5 229 46.3
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 4.9e-42 176.4 194 47.9
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 6.4e-42 176.0 150 58.7
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 7.1e-41 172.6 137 64.2
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.6e-40 169.9 213 47.4
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 7.9e-40 169.1 230 42.6
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.3e-39 167.5 200 49.5
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 5.6e-38 162.9 214 47.2
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.8e-37 160.6 132 62.1
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 2.0e-35 154.5 141 53.9
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 4.9e-34 149.8 137 59.9
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 1.4e-33 148.3 128 60.9
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.5e-33 146.4 212 41.5
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 3.9e-31 140.2 144 52.8
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.1e-28 132.1 225 40.4
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 1.4e-28 131.7 223 39.5
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 2.5e-22 110.9 212 36.3
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 5.7e-22 109.8 103 57.3
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.5e-19 101.7 160 45.6
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 7.7e-19 99.4 167 43.1
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 7.7e-19 99.4 66 68.2
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.0e-18 99.0 56 78.6
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 7.2e-17 92.8 57 73.7
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.1e-16 91.3 55 74.5
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 9.7e-14 82.4 116 43.1
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.1e-12 79.0 79 54.4
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 1.2e-11 75.5 58 62.1
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.1e-09 68.9 85 49.4
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.5e-09 66.6 47 61.7
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.6e-08 65.1 64 54.7
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 8.8e-07 59.3 131 34.4
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.0e-06 58.2 46 63.0
FAN25G3581 Fragaria x ananassa HOM05D017504 ORTHO05D022678 3.3e-06 57.4 30 86.7
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 3.3e-06 57.4 144 34.7
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 4.4e-06 57.0 60 43.3


User provided reference genes

Program Settings