Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 0.0e+00 1149.8 570 100.0
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.2e-125 454.5 528 50.6
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.8e-113 414.1 573 45.0
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.0e-112 410.6 560 45.2
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 4.5e-109 399.4 542 43.5
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 7.5e-104 382.1 533 43.3
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 8.2e-103 378.6 523 43.4
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 8.2e-103 378.6 523 43.4
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 1.3e-100 371.3 494 47.4
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.8e-97 360.9 526 43.0
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 5.2e-97 359.4 482 46.5
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 3.7e-95 353.2 528 41.5
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.2e-93 348.2 597 37.7
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.7e-92 344.4 524 43.7
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 2.9e-92 343.6 547 39.5
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.5e-91 341.3 475 44.0
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.9e-91 340.9 444 47.3
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 4.2e-91 339.7 445 44.9
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.6e-90 337.8 527 40.8
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 2.8e-90 337.0 468 41.5
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 1.8e-89 334.3 525 41.7
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.8e-89 332.4 543 40.3
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 1.7e-87 327.8 392 46.7
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 3.7e-87 326.6 455 43.1
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 9.2e-86 322.0 528 38.1
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.7e-85 320.5 468 45.1
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 2.9e-84 317.0 453 42.2
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.9e-84 317.0 542 39.7
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.3e-83 313.5 529 37.2
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 4.3e-83 313.2 510 39.4
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.5e-83 312.0 459 42.3
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.2e-82 311.6 515 37.5
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.1e-82 310.8 491 42.4
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 2.8e-82 310.5 562 36.7
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 2.8e-82 310.5 489 41.5
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 6.1e-82 309.3 530 39.4
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.0e-81 308.5 466 42.3
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 1.8e-81 307.8 456 43.4
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 2.3e-81 307.4 551 38.3
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.0e-81 307.0 465 41.3
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 4.0e-81 306.6 467 40.9
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.2e-80 305.1 499 37.3
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 2.0e-80 304.3 480 41.0
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 5.7e-80 302.8 437 41.4
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.7e-79 301.2 532 39.8
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.7e-79 300.1 503 38.0
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.4e-78 297.4 504 38.3
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.2e-78 297.0 435 41.6
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.2e-78 297.0 504 38.3
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 9.2e-78 295.4 527 37.6
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.2e-78 295.4 465 41.5
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 1.2e-77 295.0 451 41.2
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 2.7e-77 293.9 503 37.8
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 4.6e-77 293.1 460 38.7
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 1.7e-76 291.2 538 35.9
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 2.3e-76 290.8 483 40.4
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.5e-75 288.1 495 39.0
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 2.5e-75 287.3 488 39.3
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 2.5e-75 287.3 435 41.6
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 4.3e-75 286.6 528 38.4
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 3.6e-74 283.5 526 37.3
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.1e-73 282.0 522 37.5
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.4e-73 281.6 399 44.4
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.4e-73 281.6 493 39.4
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.4e-73 281.6 500 41.2
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.4e-73 281.6 458 39.7
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 4.0e-73 280.0 498 40.6
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.2e-72 278.5 443 40.9
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 1.3e-71 275.0 526 35.9
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.9e-71 273.9 465 39.4
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 4.9e-71 273.1 409 41.8
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 6.4e-71 272.7 527 34.9
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.1e-70 271.9 452 39.2
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.4e-70 270.8 511 37.0
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.4e-70 270.8 525 36.4
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 4.1e-70 270.0 526 36.9
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 3.5e-69 266.9 462 40.7
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 3.5e-69 266.9 471 37.8
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.0e-68 265.4 432 39.6
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.3e-68 264.2 538 34.4
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 6.6e-68 262.7 571 34.5
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 4.3e-67 260.0 405 40.2
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 9.5e-67 258.8 527 37.2
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 2.1e-66 257.7 317 46.1
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 2.3e-65 254.2 467 37.3
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 2.6e-64 250.8 309 45.0
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 3.4e-64 250.4 320 45.3
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 4.4e-64 250.0 525 34.3
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 4.9e-63 246.5 458 36.0
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 6.4e-63 246.1 370 38.6
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 6.0e-61 239.6 567 33.5
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 5.1e-60 236.5 327 42.8
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.9e-59 234.6 343 38.2
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 6.2e-58 229.6 439 36.7
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 4.0e-57 226.9 456 35.1
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.7e-55 221.5 326 39.3
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 5.4e-54 216.5 446 33.6
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 2.1e-53 214.5 452 34.1
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 6.0e-53 213.0 521 31.3
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 3.1e-49 200.7 427 35.1
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 3.1e-49 200.7 362 37.6
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.6e-48 197.6 465 34.4
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 7.6e-48 196.1 237 45.6
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.7e-47 194.9 236 42.8
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 6.4e-47 193.0 415 35.9
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 8.4e-47 192.6 317 37.2
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 7.1e-46 189.5 301 39.2
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.1e-45 188.0 533 29.8
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 3.0e-44 184.1 388 33.0
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 5.1e-44 183.3 235 42.6
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 5.1e-44 183.3 238 42.9
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 8.7e-44 182.6 238 42.0
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 1.1e-43 182.2 335 35.8
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 2.5e-43 181.0 329 35.6
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 4.3e-43 180.3 238 42.0
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 4.3e-43 180.3 496 30.2
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.3e-42 178.7 496 29.8
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 3.6e-42 177.2 255 39.2
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 4.8e-42 176.8 278 38.5
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 4.8e-42 176.8 278 38.5
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 2.4e-41 174.5 239 42.7
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 3.1e-41 174.1 239 42.7
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 3.1e-41 174.1 239 42.7
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 3.1e-41 174.1 266 37.6
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 6.9e-41 172.9 245 40.4
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 2.0e-40 171.4 235 41.3
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 7.6e-40 169.5 159 56.6
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.7e-39 168.3 282 35.1
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 3.2e-38 164.1 262 37.4
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 7.9e-37 159.5 179 49.2
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 3.7e-34 150.6 300 33.3
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 1.2e-32 145.6 232 37.5
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 9.9e-32 142.5 91 72.5
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 1.3e-31 142.1 107 65.4
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 1.5e-27 128.6 274 33.2
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 2.4e-25 121.3 533 26.1
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 5.3e-25 120.2 118 50.0
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 7.6e-24 116.3 236 31.4
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.1e-22 112.5 200 36.5
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.5e-22 111.3 299 27.1
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 1.2e-21 109.0 208 32.2
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.3e-20 105.5 76 61.8
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 3.0e-20 104.4 339 29.5
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 6.3e-18 96.7 126 40.5
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 1.4e-17 95.5 114 43.9
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 6.9e-17 93.2 163 36.8
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.6e-16 91.3 163 36.2
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 3.4e-16 90.9 116 44.0
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 5.0e-15 87.0 148 37.8
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 6.5e-15 86.7 151 37.1
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.5e-14 84.7 131 33.6
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 4.2e-14 84.0 61 60.7
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 1.3e-07 62.4 287 25.1
Sed0013187 Sechium edule HOM05D004258 ORTHO05D005163 2.2e-07 61.6 71 35.2
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 2.9e-07 61.2 74 32.4
MELO3C013235.2 Cucumis melo HOM05D004258 ORTHO05D005163 5.0e-07 60.5 74 31.1
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 6.5e-07 60.1 72 33.3
CsaV3_7G022050 Cucumis sativus L. HOM05D004258 ORTHO05D005163 8.5e-07 59.7 74 32.4
PSO170G1843 Papaver somniferum HOM05D004258 ORTHO05D005163 1.1e-06 59.3 75 36.0
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.9e-06 58.5 50 50.0
PSO528G0114 Papaver somniferum HOM05D004258 ORTHO05D005163 3.2e-06 57.8 75 34.7
PSO675G4589 Papaver somniferum HOM05D007740 ORTHO05D009757 3.2e-06 57.8 139 26.6
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 4.2e-06 57.4 50 48.0
SEGI_17891 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 9.4e-06 56.2 169 23.1


User provided reference genes

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