Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.3e-154 548.9 279 100.0
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 3.3e-113 412.1 361 62.3
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.9e-108 396.4 324 66.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.0e-106 389.0 328 63.1
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 9.6e-105 384.0 322 63.0
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.3e-104 383.6 325 63.4
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.3e-104 383.6 325 62.2
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.8e-104 382.5 322 62.7
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 4.8e-104 381.7 322 63.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 6.2e-104 381.3 322 62.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-103 380.2 321 62.3
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.8e-103 379.8 322 62.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.8e-103 379.8 322 62.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.4e-103 379.4 322 62.4
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.0e-103 378.6 322 61.2
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 6.9e-103 377.9 322 63.0
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 6.9e-103 377.9 322 62.7
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.2e-102 377.1 322 61.2
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.5e-102 376.7 325 61.2
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.5e-102 376.7 325 61.2
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.0e-102 376.3 323 62.2
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.8e-102 374.8 322 63.0
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-101 373.6 325 60.9
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.2e-101 372.9 325 60.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.9e-101 372.5 322 62.7
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.9e-101 372.5 325 61.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 8.4e-101 370.9 322 60.9
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.4e-100 370.2 322 60.2
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.4e-100 369.4 322 59.9
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.4e-100 369.4 353 57.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 5.5e-100 368.2 325 60.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-99 367.1 321 60.1
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.2e-99 367.1 324 61.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 3.5e-99 365.5 321 60.7
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 3.5e-99 365.5 334 58.1
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.0e-98 364.0 313 61.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.0e-98 362.5 327 58.7
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 8.7e-98 360.9 321 59.8
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.5e-97 360.1 323 58.5
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.5e-97 360.1 322 59.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.9e-97 359.8 323 59.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.3e-97 359.0 322 60.6
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.3e-97 359.0 322 60.6
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 3.3e-97 359.0 322 60.6
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 3.3e-97 359.0 322 58.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 4.3e-97 358.6 322 57.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.3e-97 358.6 351 55.3
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.3e-97 358.6 322 58.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 5.6e-97 358.2 350 58.6
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 9.6e-97 357.5 322 58.4
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.6e-96 356.7 322 58.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.8e-96 355.9 321 58.9
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.8e-96 355.9 321 58.9
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.8e-96 355.9 322 58.1
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 2.8e-96 355.9 355 54.6
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 8.1e-96 354.4 322 58.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.1e-95 354.0 322 56.8
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.1e-95 354.0 355 54.4
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.8e-95 353.2 322 58.4
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.1e-95 352.4 323 58.8
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 4.0e-95 352.1 322 57.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 6.9e-95 351.3 322 58.7
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.2e-94 350.5 321 58.6
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.6e-94 349.4 322 56.5
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 7.6e-94 347.8 322 57.1
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.2e-93 346.3 324 59.0
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.9e-93 345.9 322 56.5
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.8e-93 345.5 322 57.8
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.8e-93 345.5 322 57.8
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.9e-92 343.2 324 56.2
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.1e-91 339.7 322 57.5
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 3.0e-90 335.9 324 58.0
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 5.1e-90 335.1 315 58.1
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 7.4e-89 331.3 322 53.7
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.1e-88 329.7 307 60.9
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 3.7e-88 328.9 322 53.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.8e-88 328.6 323 56.0
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.8e-87 326.6 322 53.1
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 4.1e-87 325.5 321 54.2
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.0e-86 323.2 190 83.2
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.6e-86 322.8 291 60.1
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.9e-86 321.6 321 53.3
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 7.6e-86 321.2 322 52.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 7.6e-86 321.2 322 52.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 7.6e-86 321.2 302 59.9
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 7.6e-86 321.2 351 53.8
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.3e-85 320.5 322 49.4
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-85 320.1 322 51.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.2e-85 319.7 322 51.6
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.9e-85 319.3 289 59.2
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.8e-85 318.9 270 65.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 5.0e-85 318.5 342 50.6
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.5e-85 317.8 322 51.6
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.4e-84 317.0 322 51.6
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.4e-84 317.0 322 51.6
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.5e-84 316.2 322 50.6
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 4.2e-84 315.5 341 50.1
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 5.5e-84 315.1 192 79.7
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 9.3e-84 314.3 298 58.7
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 3.6e-83 312.4 336 52.1
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 2.3e-82 309.7 322 50.0
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 5.1e-82 308.5 323 49.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 5.1e-82 308.5 323 49.8
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.1e-82 308.5 319 51.1
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.7e-82 308.1 315 57.1
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.5e-81 307.0 323 49.8
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.7e-81 305.1 294 56.5
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.1e-79 299.3 321 48.9
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.0e-78 296.6 294 53.7
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.4e-78 295.8 321 48.9
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 7.7e-78 294.7 289 57.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.8e-77 292.4 314 51.0
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.0e-77 292.0 280 55.7
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-76 290.8 190 75.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.4e-76 290.4 289 56.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 3.2e-76 289.3 197 73.6
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.2e-75 287.3 325 49.2
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.6e-75 285.4 293 51.2
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.0e-70 270.0 314 50.6
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.1e-68 264.2 314 50.0
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.7e-64 250.4 316 46.2
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.1e-63 247.7 171 67.3
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.7e-59 233.0 226 55.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.8e-58 230.3 226 54.9
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.0e-58 229.2 226 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.5e-57 227.3 275 45.5
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.5e-57 227.3 233 53.6
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 3.7e-56 222.6 225 52.9
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.3e-56 221.9 226 52.7
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.5e-54 216.1 223 52.5
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.8e-50 203.8 286 44.8
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 6.3e-48 195.3 118 83.1
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.0e-43 178.3 192 51.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.4e-42 177.6 219 47.5
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 4.1e-39 166.0 96 85.4
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.8e-38 161.8 118 68.6
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.7e-37 160.6 97 80.4
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.3e-37 160.2 98 80.6
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 6.6e-37 158.7 98 81.6
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 6.6e-37 158.7 99 72.7
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.2e-35 154.5 98 78.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 2.8e-35 153.3 96 78.1
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 8.0e-35 151.8 313 36.4
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 3.0e-34 149.8 97 74.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.4e-31 140.2 101 64.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.0e-31 138.7 319 34.2
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.6e-30 137.5 125 60.0
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.7e-30 136.7 125 58.4
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.0e-29 133.3 225 39.6
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 3.0e-29 133.3 109 60.6
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.5e-28 130.2 207 42.5
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.1e-26 123.2 82 74.4
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 8.9e-26 121.7 178 43.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.5e-25 118.6 74 79.7
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 2.4e-23 113.6 150 48.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.0e-18 96.3 97 54.6
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 5.8e-17 92.4 72 69.4
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 5.1e-13 79.3 125 40.0
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 8.6e-13 78.6 65 60.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 7.3e-12 75.5 57 66.7
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.4e-10 71.2 40 82.5
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 4.0e-10 69.7 40 80.0
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 2.4e-07 60.5 49 63.3
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-06 58.2 45 64.4
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.6e-06 57.8 116 32.8


User provided reference genes

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