Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 0.0e+00 1486.9 774 100.0
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.4e-302 1042.7 779 70.5
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.0e-297 1026.5 831 63.5
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 5.8e-277 957.6 791 65.7
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.9e-275 952.6 789 65.0
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 7.6e-269 930.6 801 63.5
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 4.2e-267 924.9 795 64.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.2e-266 923.3 843 62.0
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 5.1e-265 917.9 797 64.4
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.9e-259 899.4 787 64.7
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 4.6e-258 894.8 681 66.8
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.5e-256 889.8 787 63.7
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.0e-256 889.4 786 61.5
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 2.5e-256 889.0 787 63.9
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 5.7e-256 887.9 787 63.9
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.7e-255 886.3 796 61.7
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.8e-255 884.8 808 63.1
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.1e-254 882.1 794 62.5
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 2.9e-252 875.5 793 61.9
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.6e-250 868.6 787 63.2
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.6e-250 868.6 793 62.9
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.6e-250 868.6 793 62.9
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 7.9e-250 867.5 793 63.1
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.0e-249 867.1 787 61.1
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 5.1e-249 864.8 784 62.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.8e-247 859.0 795 61.9
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 8.2e-247 857.4 792 61.1
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.4e-246 856.7 793 61.2
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 2.4e-246 855.9 799 61.1
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 9.1e-246 854.0 694 65.1
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 4.5e-245 851.7 802 61.8
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 7.7e-245 850.9 803 60.1
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.3e-244 850.1 792 62.1
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 8.5e-244 847.4 792 60.9
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.8e-241 839.7 798 61.2
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 6.7e-241 837.8 791 60.2
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 2.6e-240 835.9 832 59.1
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 2.8e-239 832.4 785 61.8
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 3.7e-239 832.0 799 59.4
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 6.3e-239 831.2 795 60.0
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.1e-238 830.5 805 60.6
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.3e-236 823.5 801 59.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.0e-236 821.6 792 59.3
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 4.2e-235 818.5 806 58.1
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.5e-235 818.1 792 59.3
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.6e-234 816.6 804 58.6
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.6e-234 816.6 801 57.7
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.0e-233 812.4 792 59.3
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.8e-233 811.2 792 59.2
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 8.8e-233 810.8 804 58.0
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 5.7e-232 808.1 792 58.2
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 5.7e-232 808.1 793 59.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 7.5e-232 807.7 785 55.8
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.8e-231 805.8 790 58.7
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.8e-231 805.1 789 56.9
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.8e-230 803.1 801 57.8
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.4e-230 801.6 817 57.9
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.1e-230 800.8 790 59.6
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.1e-230 800.8 790 59.6
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.6e-229 800.0 791 59.7
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.9e-229 798.1 791 59.5
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.3e-228 797.0 805 57.9
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.8e-228 795.4 789 59.6
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 2.7e-226 789.3 791 57.8
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 4.7e-226 788.5 794 57.8
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 6.8e-225 784.6 793 57.5
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.2e-224 783.9 728 60.9
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.7e-223 780.0 804 59.1
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.1e-222 777.3 798 56.9
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.8e-222 776.5 795 57.7
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 4.5e-221 771.9 790 57.1
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 5.0e-220 768.5 797 56.8
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 8.6e-220 767.7 790 56.7
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 1.9e-219 766.5 790 57.3
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 7.3e-219 764.6 794 57.4
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.4e-217 760.4 790 57.0
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.2e-214 749.2 788 55.6
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 9.2e-214 747.7 679 60.5
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.2e-213 747.3 792 55.2
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.2e-213 747.3 797 56.1
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.6e-213 746.9 805 55.9
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 2.0e-213 746.5 790 56.5
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.9e-211 740.0 797 55.0
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 4.7e-210 735.3 789 53.4
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 6.2e-210 734.9 790 55.3
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 3.1e-209 732.6 795 55.7
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 8.9e-209 731.1 841 52.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.2e-208 730.7 795 55.7
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 7.5e-208 728.0 788 55.1
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.3e-207 727.2 790 55.9
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 4.3e-203 712.2 789 53.9
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 4.7e-202 708.8 791 53.7
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 2.3e-201 706.4 790 54.6
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 4.0e-201 705.7 790 54.4
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 4.0e-201 705.7 789 54.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 4.4e-200 702.2 791 54.6
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 2.2e-199 699.9 789 54.4
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.1e-198 694.9 881 50.7
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.5e-195 686.4 795 52.7
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 4.3e-195 685.6 790 52.5
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 1.6e-194 683.7 799 52.8
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 3.9e-188 662.5 790 52.5
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 4.3e-187 659.1 798 51.0
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.8e-186 656.4 593 64.2
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 8.4e-183 644.8 791 50.7
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.6e-181 640.6 837 49.5
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 9.0e-177 624.8 737 52.6
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 5.1e-172 609.0 1244 38.0
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 3.4e-168 596.3 605 56.2
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 6.9e-161 572.0 806 46.2
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 6.0e-157 558.9 545 54.9
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.5e-155 553.5 491 61.3
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 3.2e-150 536.6 811 43.9
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 6.1e-141 505.8 803 46.1
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.0e-140 503.4 798 44.5
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 2.8e-138 496.9 803 44.7
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 5.3e-137 492.7 807 42.5
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 3.8e-127 459.9 472 53.2
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 1.0e-119 435.3 802 36.2
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.3e-108 397.5 360 64.7
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.8e-107 392.1 387 55.3
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.3e-106 391.7 362 64.6
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.5e-102 375.6 395 58.5
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 8.6e-95 352.4 492 44.9
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.6e-93 347.1 304 67.4
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.4e-89 334.3 386 50.0
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 2.3e-79 301.2 486 40.7
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.4e-75 287.3 331 51.4
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.2e-69 266.5 301 50.5
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.3e-62 243.0 173 68.2
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.8e-61 241.1 776 29.1
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 2.4e-60 238.0 193 59.6
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.4e-57 228.8 907 29.1
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 6.7e-55 219.9 717 30.5
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 4.8e-53 213.8 147 71.4
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-37 162.5 98 82.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-37 160.6 145 56.6
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-34 151.8 90 81.1
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.8e-34 151.0 275 37.5
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.5e-34 150.2 120 65.0
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-32 143.7 83 83.1
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.8e-31 142.1 155 54.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-30 137.5 82 79.3
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-29 135.6 113 61.9
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-29 135.2 84 78.6
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 3.7e-29 134.4 142 54.2
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 6.9e-28 130.2 191 41.4
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 2.9e-26 124.8 188 45.2
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-25 120.9 67 80.6
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 2.1e-24 118.6 97 64.9
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 8.8e-23 113.2 156 38.5
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 7.4e-22 110.2 69 75.4
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 1.3e-21 109.4 116 55.2
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 2.8e-21 108.2 102 55.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.7e-21 107.8 61 82.0
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 3.7e-21 107.8 82 64.6
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-21 106.7 61 80.3
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 5.3e-20 104.0 155 55.5
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.3e-20 104.0 53 92.5
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-19 102.8 60 83.3
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.6e-19 101.7 52 92.3
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 2.9e-18 98.2 53 86.8
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.9e-18 98.2 52 88.5
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 8.5e-18 96.7 154 53.2
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 9.4e-17 93.2 51 84.3
Ah.15g100450 Amaranthus hybridus HOM05D035932 ORTHO05D026494 3.0e-15 88.2 59 74.6
Ah.15g100480 Amaranthus hybridus HOM05D035932 ORTHO05D026494 3.0e-15 88.2 59 74.6
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 5.2e-15 87.4 272 28.7
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 8.8e-15 86.7 49 83.7
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.6e-14 85.1 120 44.2
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-13 80.9 78 47.4
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 4.5e-11 74.3 184 34.2
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-10 73.2 60 66.7
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.0e-10 73.2 86 48.8
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-10 72.8 49 61.2
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 2.1e-08 65.5 133 39.1
A02p09200 Brassica napus HOM05D061471 ORTHO05D041986 6.7e-07 60.5 32 78.1
BraA02t05987Z Brassica rapa HOM05D061471 ORTHO05D041986 6.7e-07 60.5 32 78.1
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 3.3e-06 58.2 41 65.9
Ah.09g231660 Amaranthus hybridus HOM05D002420 ORTHO05D002422 5.7e-06 57.4 33 78.8
Actinidia30340 Actinidia chinensis HOM05D004098 ORTHO05D053527 7.5e-06 57.0 37 70.3


User provided reference genes

Program Settings