Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019764 Daucus carota HOM05D000911 ORTHO05D176036 1.1e-53 213.0 103 100.0
DCAR_004224 Daucus carota HOM05D000911 ORTHO05D025227 3.2e-13 78.6 134 36.6
DCAR_008159 Daucus carota HOM05D000911 ORTHO05D025227 7.8e-12 73.9 92 40.2
vmacro22907 Vaccinium macrocarpon HOM05D000911 ORTHO05D000890 4.3e-10 68.2 92 37.0
Hma1.2p1_0249F.1_g102260 Hydrangea macrophylla HOM05D000911 ORTHO05D000890 2.4e-08 62.4 35 74.3
Rhsim06G0163400 Rhododendron simsii HOM05D000911 ORTHO05D000890 3.1e-08 62.0 42 69.0
Nitab4.5_0000888g0150 Nicotiana tabacum HOM05D000911 ORTHO05D000890 4.0e-08 61.6 89 34.8
Eucgr.A01119 Eucalyptus grandis HOM05D000911 ORTHO05D000890 5.3e-08 61.2 39 69.2
Manes.12G074000 Manihot esculenta HOM05D000911 ORTHO05D000890 5.3e-08 61.2 35 71.4
QL08p032743 Quercus lobata HOM05D000911 ORTHO05D000890 5.3e-08 61.2 35 74.3
GSVIVG01030439001 Vitis vinifera HOM05D000911 ORTHO05D000890 5.3e-08 61.2 35 71.4
Ciclev10015580m.g Citrus clementina HOM05D000911 ORTHO05D000890 6.9e-08 60.8 35 71.4
Lalb_Chr13g0304271 Lupinus albus HOM05D000911 ORTHO05D000890 6.9e-08 60.8 35 71.4
Sc05g0009240 Simmondsia chinensis HOM05D000911 ORTHO05D000890 6.9e-08 60.8 35 74.3
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 9.0e-08 60.5 137 29.2
Phvul.003G079600 Phaseolus vulgaris HOM05D000911 ORTHO05D000890 9.0e-08 60.5 35 71.4
VMungo1215G3013 Vigna mungo HOM05D000911 ORTHO05D000890 9.0e-08 60.5 35 71.4
arahy.Tifrunner.gnm1.ann1.RIM768 Arachis hypogaea HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 71.4
arahy.Tifrunner.gnm1.ann1.YB5YRA Arachis hypogaea HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 71.4
CSS0032464 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 71.4
AUR62012718 Chenopodium quinoa HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 77.1
AUR62021938 Chenopodium quinoa HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 77.1
Dinv05418 Davidia involucrata HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 68.6
Medtr4g132250 Medicago truncatula HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 71.4
Nitab4.5_0000533g0140 Nicotiana tabacum HOM05D000911 ORTHO05D000890 1.2e-07 60.1 93 33.3
Prupe.4G019500 Prunus persica HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 71.4
TPR.G36998 Trifolium pratense HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 71.4
vmacro12197 Vaccinium macrocarpon HOM05D000911 ORTHO05D000890 1.2e-07 60.1 35 71.4
Atru.chr6.3202 Acer truncatum HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 68.6
Ah.14g088000 Amaranthus hybridus HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 74.3
EL10Ac8g20071 Beta vulgaris HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 74.3
ClCG02G008870 Citrullus lanatus HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 71.4
Cc05_g04350 Coffea canephora HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 74.3
MELO3C019277.2 Cucumis melo HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 71.4
CsaV3_2G034880 Cucumis sativus L. HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 71.4
Duzib235G1128 Durio zibethinus HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 74.3
Duzib248G1060 Durio zibethinus HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 74.3
Glyma.17G012600 Glycine max HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 71.4
Hund21413 Selenicereus undatus HOM05D000911 ORTHO05D000890 1.5e-07 59.7 35 71.4
Ca_21079_v3 Cicer arietinum L. HOM05D000911 ORTHO05D000890 2.0e-07 59.3 35 71.4
CiPaw.04G115100 Carya illinoinensis HOM05D000911 ORTHO05D000890 2.6e-07 58.9 35 71.4
Sed0006172 Sechium edule HOM05D000911 ORTHO05D000890 2.6e-07 58.9 35 68.6
CSS0023512 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 3.4e-07 58.5 35 68.6
QL05p072984 Quercus lobata HOM05D000911 ORTHO05D000890 3.4e-07 58.5 35 68.6
QL08p005768 Quercus lobata HOM05D000911 ORTHO05D000890 3.4e-07 58.5 35 68.6
Sc12g0002300 Simmondsia chinensis HOM05D000911 ORTHO05D000890 3.4e-07 58.5 35 68.6
CiPaw.03G159300 Carya illinoinensis HOM05D000911 ORTHO05D000890 4.5e-07 58.2 35 68.6
Hund23463 Selenicereus undatus HOM05D000911 ORTHO05D000890 4.5e-07 58.2 35 68.6
CAN.G1014.1 Capsicum annuum HOM05D000911 ORTHO05D000890 5.8e-07 57.8 35 71.4
Ciclev10006954m.g Citrus clementina HOM05D000911 ORTHO05D000890 5.8e-07 57.8 37 64.9
Nitab4.5_0002827g0090 Nicotiana tabacum HOM05D000911 ORTHO05D000890 5.8e-07 57.8 35 71.4
Nitab4.5_0007799g0040 Nicotiana tabacum HOM05D000911 ORTHO05D000890 5.8e-07 57.8 35 71.4
Peaxi162Scf00147g00613 Petunia axillaris HOM05D000911 ORTHO05D000890 5.8e-07 57.8 35 71.4
Potri.011G004700 Populus trichocarpa HOM05D000911 ORTHO05D000890 5.8e-07 57.8 35 71.4
Sabra11G0003600 Salix brachista HOM05D001191 ORTHO05D000979 5.8e-07 57.8 35 71.4
Solyc02g080620.3 Solanum lycopersicum HOM05D000911 ORTHO05D000890 5.8e-07 57.8 35 71.4
Sopen02g025330 Solanum pennellii HOM05D000911 ORTHO05D000890 5.8e-07 57.8 35 71.4
Actinidia05509 Actinidia chinensis HOM05D000911 ORTHO05D000890 7.6e-07 57.4 35 68.6
BcaC05g25047 Brassica carinata HOM05D001382 ORTHO05D001266 7.6e-07 57.4 35 71.4
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 7.6e-07 57.4 35 71.4
C05p09890 Brassica napus HOM05D000911 ORTHO05D001266 7.6e-07 57.4 35 71.4
BolC5t29728H Brassica oleracea HOM05D000911 ORTHO05D001266 7.6e-07 57.4 35 71.4
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 7.6e-07 57.4 35 71.4
CSS0002511 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 7.6e-07 57.4 35 71.4
CSS0009709 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D000890 7.6e-07 57.4 35 71.4
Dinv13900 Davidia involucrata HOM05D000911 ORTHO05D000890 7.6e-07 57.4 35 68.6
Migut.H01573 Erythranthe guttata HOM05D000911 ORTHO05D000890 7.6e-07 57.4 35 68.6
Lj4g0025071 Lotus japonicus HOM05D000911 ORTHO05D000890 7.6e-07 57.4 35 68.6
Psat4g006440 Pisum sativum HOM05D000911 ORTHO05D000890 7.6e-07 57.4 35 68.6
CiPaw.09G092800 Carya illinoinensis HOM05D000911 ORTHO05D000890 9.9e-07 57.0 35 65.7
FvH4_3g01940 Fragaria vesca HOM05D000911 ORTHO05D000890 9.9e-07 57.0 35 68.6
FAN25G3392 Fragaria x ananassa HOM05D000911 ORTHO05D000890 9.9e-07 57.0 35 68.6
MD10G1322400 Malus domestica HOM05D000911 ORTHO05D000890 9.9e-07 57.0 35 68.6
RcHm_v2.0_Chr5g0002851 Rosa chinensis HOM05D000911 ORTHO05D000890 9.9e-07 57.0 35 68.6
ATR0794G109 Amborella trichopoda HOM05D000911 ORTHO05D000890 1.3e-06 56.6 35 65.7
Glyma.09G004200 Glycine max HOM05D000911 ORTHO05D000890 1.3e-06 56.6 37 62.2
SalBow1G3326 Salvia bowleyana HOM05D000911 ORTHO05D000890 1.3e-06 56.6 35 68.6
TWI18G1433 Tripterygium wilfordii HOM05D000911 ORTHO05D000890 1.3e-06 56.6 34 67.6
vmacro15790 Vaccinium macrocarpon HOM05D000911 ORTHO05D025227 1.3e-06 56.6 35 65.7
vmacro15806 Vaccinium macrocarpon HOM05D000911 ORTHO05D025227 1.3e-06 56.6 35 65.7
CANSAT64G1020 Cannabis sativa HOM05D000911 ORTHO05D000890 1.7e-06 56.2 35 62.9
CiPaw.10G071800 Carya illinoinensis HOM05D000911 ORTHO05D000890 1.7e-06 56.2 35 65.7
Haze_12852 Corylus avellana HOM05D000911 ORTHO05D000890 1.7e-06 56.2 39 64.1
ECA248G1242 Erigeron canadensis HOM05D000911 ORTHO05D000890 1.7e-06 56.2 35 65.7
Medtr2g088130 Medicago truncatula HOM05D000911 ORTHO05D000890 1.7e-06 56.2 35 68.6
Psat1g185800 Pisum sativum HOM05D000911 ORTHO05D000890 1.7e-06 56.2 35 65.7
Thecc.02G365600 Theobroma cacao HOM05D000911 ORTHO05D000890 1.7e-06 56.2 35 68.6
Ah.01g003470 Amaranthus hybridus HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 65.7
ClCG01G021920 Citrullus lanatus HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 68.6
MELO3C007396.2 Cucumis melo HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 68.6
CsaV3_6G048980 Cucumis sativus L. HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 68.6
Thhalv10007886m.g Eutrema salsugineum HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 68.6
Hma1.2p1_0091F.1_g046450 Hydrangea macrophylla HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 65.7
MD05G1348000 Malus domestica HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 65.7
Oeu014928.1 Olea europaea HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 65.7
Peaxi162Scf00047g01817 Petunia axillaris HOM05D000911 ORTHO05D000890 2.2e-06 55.8 34 67.6
PGR042G3273 Punica granatum HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 68.6
Sp1g10420 Schrenkiella parvula HOM05D000911 ORTHO05D000890 2.2e-06 55.8 35 68.6
Actinidia26906 Actinidia chinensis HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 65.7
Aa31LG1G2980 Aethionema arabicum HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 68.6
Carub.0001s1146 Capsella rubella HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 68.6
CARHR012130 Cardamine hirsuta HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 68.6
FAN21G3155 Fragaria x ananassa HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 65.7
Glyma.12G193000 Glycine max HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 68.6
Glyma.13G309300 Glycine max HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 68.6
HanXRQChr01g0004201 Helianthus annuus HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 65.7
Hma1.2p1_0749F.1_g212650 Hydrangea macrophylla HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 65.7
Phvul.005G115600 Phaseolus vulgaris HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 68.6
VMungo1080G1165 Vigna mungo HOM05D000911 ORTHO05D000890 2.9e-06 55.5 35 68.6
Cpa.g.sc87.88 Carica papaya HOM05D000911 ORTHO05D000890 3.8e-06 55.1 35 71.4
Cfa014389 Carpinus fangiana HOM05D000911 ORTHO05D000890 3.8e-06 55.1 35 68.6
Eucgr.E04043 Eucalyptus grandis HOM05D000911 ORTHO05D000890 3.8e-06 55.1 35 65.7
PGSC0003DMG400016478 Solanum tuberosum HOM05D000911 ORTHO05D000890 3.8e-06 55.1 35 65.7
BcaB03g13231 Brassica carinata HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 68.6
A08p33230 Brassica napus HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 68.6
BolC8t49125H Brassica oleracea HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 68.6
BraA08t35242Z Brassica rapa HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 68.6
Ciclev10015131m.g Citrus clementina HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
Cc09_g01580 Coffea canephora HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
Haze_06809 Corylus avellana HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
Gohir.A06G148600 Gossypium hirsutum HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 68.6
Gohir.D06G154600 Gossypium hirsutum HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 68.6
Gorai.010G180700 Gossypium raimondii HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 68.6
Oeu025271.1 Olea europaea HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
Psat5g261760 Pisum sativum HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
Sabra04G0006300 Salix brachista HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
TPR.G4227 Trifolium pratense HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
TWI38G0912 Tripterygium wilfordii HOM05D000911 ORTHO05D000890 4.9e-06 54.7 35 65.7
MSTRG.14638 Avicennia marina HOM05D000911 ORTHO05D000890 6.4e-06 54.3 35 65.7
PGR042G1139 Punica granatum HOM05D000911 ORTHO05D000890 6.4e-06 54.3 35 65.7
AL1G22980 Arabidopsis lyrata HOM05D000911 ORTHO05D000890 8.4e-06 53.9 35 65.7
AT1G11790 Arabidopsis thaliana HOM05D000911 ORTHO05D000890 8.4e-06 53.9 35 65.7
MSTRG.7203 Avicennia marina HOM05D000911 ORTHO05D000890 8.4e-06 53.9 35 65.7
Migut.M01327 Erythranthe guttata HOM05D000911 ORTHO05D000890 8.4e-06 53.9 35 62.9
PSO210G2249 Papaver somniferum HOM05D000911 ORTHO05D000890 8.4e-06 53.9 35 65.7
PSO832G0644 Papaver somniferum HOM05D000911 ORTHO05D000890 8.4e-06 53.9 35 65.7
Phvul.006G149600 Phaseolus vulgaris HOM05D000911 ORTHO05D000890 8.4e-06 53.9 52 46.2
GSVIVG01012716001 Vitis vinifera HOM05D000911 ORTHO05D000890 8.4e-06 53.9 35 62.9


User provided reference genes

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