Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 3.5e-118 428.3 219 100.0
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 4.4e-113 411.4 218 95.0
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 7.3e-108 394.0 217 91.7
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 6.2e-107 391.0 219 88.6
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.1e-106 388.7 219 88.1
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 8.9e-106 387.1 219 89.0
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 8.9e-106 387.1 217 89.9
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 2.6e-105 385.6 219 87.2
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.3e-104 383.3 219 86.8
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 3.7e-104 381.7 216 88.0
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 3.7e-104 381.7 220 87.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 3.7e-104 381.7 221 87.3
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 4.9e-104 381.3 221 87.8
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 4.9e-104 381.3 221 87.3
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 6.4e-104 380.9 220 85.9
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.1e-103 380.2 221 86.4
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.9e-103 379.4 221 86.4
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.9e-103 379.4 221 86.9
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 2.4e-103 379.0 221 86.9
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.2e-103 378.6 221 86.9
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.2e-103 378.6 221 86.9
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 3.2e-103 378.6 219 84.9
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 4.1e-103 378.3 220 86.8
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 1.2e-102 376.7 219 85.8
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.2e-102 376.7 219 85.4
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 6.0e-102 374.4 220 86.8
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 2.3e-101 372.5 219 85.4
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.3e-101 372.5 220 85.9
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 2.3e-101 372.5 221 84.6
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 3.0e-101 372.1 220 86.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 3.9e-101 371.7 217 84.8
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 5.1e-101 371.3 219 86.3
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 5.1e-101 371.3 219 83.6
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 5.1e-101 371.3 216 85.2
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 6.6e-101 370.9 219 84.5
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 8.6e-101 370.5 219 85.4
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 8.6e-101 370.5 219 84.9
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 8.6e-101 370.5 220 85.0
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.5e-100 369.8 217 84.8
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 4.3e-100 368.2 220 84.5
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.6e-100 367.9 217 84.8
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 5.6e-100 367.9 220 84.1
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 7.3e-100 367.5 220 84.1
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 9.5e-100 367.1 219 83.6
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 9.5e-100 367.1 220 83.6
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.2e-99 366.7 217 83.4
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.2e-99 366.7 219 84.9
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.6e-99 366.3 216 85.6
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.1e-99 365.9 221 86.0
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.8e-99 365.5 218 83.5
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 2.8e-99 365.5 220 85.0
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.6e-99 365.2 218 84.9
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.6e-99 365.2 220 83.6
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.7e-99 364.8 217 83.9
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 6.2e-99 364.4 220 83.2
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 6.2e-99 364.4 220 83.2
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 6.2e-99 364.4 220 83.2
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 8.1e-99 364.0 217 83.4
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.1e-99 364.0 217 83.4
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 8.1e-99 364.0 219 83.6
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.1e-98 363.6 220 83.2
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 81.8
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 83.2
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.8e-98 362.8 218 84.9
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.8e-98 362.8 218 84.9
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.8e-98 362.8 217 82.9
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 84.5
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 84.5
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 3.1e-98 362.1 220 82.7
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 3.1e-98 362.1 220 83.2
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.1e-98 362.1 217 82.9
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 3.1e-98 362.1 214 85.5
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 3.1e-98 362.1 217 83.4
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 5.2e-98 361.3 220 82.7
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 5.2e-98 361.3 219 82.2
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 5.2e-98 361.3 219 82.2
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 5.2e-98 361.3 230 80.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 5.2e-98 361.3 214 85.0
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 6.8e-98 360.9 220 82.3
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 8.9e-98 360.5 220 82.3
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 1.2e-97 360.1 220 81.8
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.2e-97 360.1 220 81.8
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.2e-97 360.1 220 81.8
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 1.2e-97 360.1 218 83.5
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.5e-97 359.8 220 82.7
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 2.0e-97 359.4 219 81.3
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 2.0e-97 359.4 219 82.2
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.6e-97 359.0 218 83.0
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.4e-97 358.6 220 81.8
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 3.4e-97 358.6 215 84.2
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 4.4e-97 358.2 218 83.0
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 81.4
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 82.3
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 7.6e-97 357.5 218 81.7
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.3e-96 356.7 215 84.7
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-96 356.7 218 83.0
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 80.3
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 81.7
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.7e-96 356.3 219 81.7
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 2.2e-96 355.9 218 82.1
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.9e-96 355.5 217 80.6
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.7e-96 355.1 220 81.4
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 3.7e-96 355.1 217 80.6
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 82.1
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 81.2
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 6.4e-96 354.4 218 81.7
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 6.4e-96 354.4 225 82.7
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 81.2
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 5.4e-95 351.3 217 80.2
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 5.4e-95 351.3 218 80.3
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 5.4e-95 351.3 219 79.9
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 5.4e-95 351.3 221 81.4
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 7.1e-95 350.9 219 79.5
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 9.2e-95 350.5 220 80.9
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 6.0e-94 347.8 220 80.9
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.3e-93 345.9 219 81.3
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 219 79.9
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 221 78.3
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.5e-92 342.4 218 79.8
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.3e-83 313.5 220 74.1
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.8e-82 309.7 224 71.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.8e-82 309.7 173 84.4
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 9.9e-81 303.9 165 88.5
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.7e-80 303.1 193 77.7
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 3.5e-78 295.4 219 71.7
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.4e-74 282.7 163 83.4
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 5.3e-74 281.6 223 66.4
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 5.3e-74 281.6 165 84.2
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 6.9e-74 281.2 219 70.8
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.4e-71 273.5 224 66.5
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.1e-71 271.2 197 70.1
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 2.1e-70 269.6 169 76.3
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 7.9e-70 267.7 228 65.4
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.2e-64 249.6 219 64.4
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 3.0e-61 239.2 220 61.8
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 6.3e-59 231.5 215 56.7
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.0e-48 197.6 142 78.9
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 9.4e-47 191.0 185 55.1
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 3.6e-46 189.1 217 50.7
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.3e-45 186.4 131 70.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 4.1e-42 175.6 150 56.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.3e-29 133.3 105 69.5
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.2e-15 85.9 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 4.2e-15 85.9 59 72.9
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.7e-11 72.8 55 72.7
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.7e-11 72.8 57 71.9
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.1e-07 61.2 100 41.0


User provided reference genes

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