Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018517 Daucus carota HOM05D002224 ORTHO05D043348 7.0e-30 133.3 66 100.0
DCAR_002340 Daucus carota HOM05D002224 ORTHO05D002446 2.7e-26 121.3 63 93.7
Dinv44647 Davidia involucrata HOM05D002224 ORTHO05D002446 2.4e-22 108.2 60 85.0
Lj3A795G23 Lonicera japonica HOM05D002224 ORTHO05D002446 2.0e-21 105.1 60 88.3
Dinv29900 Davidia involucrata HOM05D002224 ORTHO05D002446 1.3e-20 102.4 60 83.3
CSS0042816 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D043348 2.9e-20 101.3 63 77.8
CiPaw.02G115800 Carya illinoinensis HOM05D002224 ORTHO05D002446 3.8e-20 100.9 60 85.0
Lj6C657T15 Lonicera japonica HOM05D002224 ORTHO05D002446 6.6e-20 100.1 60 80.0
Haze_11315 Corylus avellana HOM05D002224 ORTHO05D002446 8.6e-20 99.8 64 79.7
Haze_11317 Corylus avellana HOM05D002224 ORTHO05D002446 8.6e-20 99.8 64 79.7
CSS0035478 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D002446 2.5e-19 98.2 60 78.3
Ciclev10004192m.g Citrus clementina HOM05D002224 ORTHO05D002446 3.3e-19 97.8 59 84.7
Nitab4.5_0005738g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 5.5e-19 97.1 59 76.3
Nitab4.5_0008399g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 5.5e-19 97.1 59 76.3
Atru.chr4.2182 Acer truncatum HOM05D002224 ORTHO05D002446 7.2e-19 96.7 59 83.1
Thecc.04G247700 Theobroma cacao HOM05D002224 ORTHO05D002446 1.2e-18 95.9 59 83.1
COL.COLO4_15805 Corchorus olitorius HOM05D002224 ORTHO05D002446 1.6e-18 95.5 59 83.1
Lj6g0016969 Lotus japonicus HOM05D002224 ORTHO05D002446 1.6e-18 95.5 59 81.4
Cc03_g04990 Coffea canephora HOM05D002224 ORTHO05D002446 3.6e-18 94.4 59 76.3
Manes.03G168200 Manihot esculenta HOM05D002224 ORTHO05D002446 3.6e-18 94.4 59 79.7
Sopen06g018860 Solanum pennellii HOM05D002224 ORTHO05D002446 6.1e-18 93.6 60 73.3
Glyma.20G202100 Glycine max HOM05D002224 ORTHO05D002446 8.0e-18 93.2 59 81.4
Nn1g02667 Nelumbo nucifera HOM05D002224 ORTHO05D002446 8.0e-18 93.2 60 78.3
TAR636G2710 Trochodendron aralioides HOM05D002224 ORTHO05D002446 8.0e-18 93.2 60 80.0
DCAR_030729 Daucus carota HOM05D002224 ORTHO05D002446 1.0e-17 92.8 61 80.3
Lalb_Chr03g0037041 Lupinus albus HOM05D002224 ORTHO05D002446 1.4e-17 92.4 59 81.4
Manes.15G037500 Manihot esculenta HOM05D002224 ORTHO05D002446 1.4e-17 92.4 59 79.7
Gorai.011G171900 Gossypium raimondii HOM05D002224 ORTHO05D002446 1.8e-17 92.0 58 77.6
Sabra08G0124600 Salix brachista HOM05D002224 ORTHO05D002446 1.8e-17 92.0 59 78.0
Potri.008G163300 Populus trichocarpa HOM05D002224 ORTHO05D002446 2.3e-17 91.7 59 79.7
Solyc09g089560.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 2.3e-17 91.7 59 74.6
Solyc06g053750.3 Solanum lycopersicum HOM05D002224 ORTHO05D002446 3.0e-17 91.3 60 71.7
Duzib212G0982 Durio zibethinus HOM05D002224 ORTHO05D002446 4.0e-17 90.9 59 79.7
Glyma.10G188600 Glycine max HOM05D002224 ORTHO05D002446 4.0e-17 90.9 59 79.7
Lj5g0007272 Lotus japonicus HOM05D002224 ORTHO05D002446 4.0e-17 90.9 59 79.7
Potri.010G075000 Populus trichocarpa HOM05D002224 ORTHO05D002446 4.0e-17 90.9 59 78.0
Rhsim04G0189200 Rhododendron simsii HOM05D002224 ORTHO05D002446 4.0e-17 90.9 63 69.8
Sopen09g032480 Solanum pennellii HOM05D002224 ORTHO05D002446 4.0e-17 90.9 59 74.6
FAN22G0018 Fragaria x ananassa HOM05D002224 ORTHO05D002446 5.2e-17 90.5 59 78.0
Glyma.10G008700 Glycine max HOM05D002224 ORTHO05D002446 5.2e-17 90.5 59 78.0
QL06p015938 Quercus lobata HOM05D002224 ORTHO05D002446 5.2e-17 90.5 59 79.7
vmacro08439 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 6.8e-17 90.1 59 72.9
Cpa.g.sc44.110 Carica papaya HOM05D002224 ORTHO05D002446 1.2e-16 89.4 59 76.3
Lalb_Chr21g0312421 Lupinus albus HOM05D002224 ORTHO05D002446 1.2e-16 89.4 62 74.2
Gohir.A10G113500 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.5e-16 89.0 58 75.9
Gohir.D10G153900 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.5e-16 89.0 58 75.9
Prupe.1G033200 Prunus persica HOM05D002224 ORTHO05D002446 1.5e-16 89.0 59 78.0
Solyc03g005430.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 1.5e-16 89.0 59 71.2
Sopen03g001460 Solanum pennellii HOM05D002224 ORTHO05D002446 1.5e-16 89.0 59 71.2
GSVIVG01018133001 Vitis vinifera HOM05D002224 ORTHO05D002446 1.5e-16 89.0 59 78.0
Actinidia05458 Actinidia chinensis HOM05D002224 ORTHO05D002446 2.0e-16 88.6 60 71.7
Sabra10G0033800 Salix brachista HOM05D002224 ORTHO05D002446 2.0e-16 88.6 59 76.3
CAN.G1007.9 Capsicum annuum HOM05D002224 ORTHO05D002446 3.4e-16 87.8 59 72.9
HanXRQChr03g0092341 Helianthus annuus HOM05D002224 ORTHO05D002446 3.4e-16 87.8 63 73.0
Lsat_1_v5_gn_3_122660 Lactuca sativa HOM05D002224 ORTHO05D002446 3.4e-16 87.8 60 75.0
Ca_11941_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 4.4e-16 87.4 59 76.3
Lalb_Chr19g0128431 Lupinus albus HOM05D002224 ORTHO05D002446 4.4e-16 87.4 59 78.0
PSO210G1885 Papaver somniferum HOM05D002224 ORTHO05D002446 4.4e-16 87.4 62 71.0
CAN.G638.71 Capsicum annuum HOM05D002224 ORTHO05D002446 5.7e-16 87.0 59 71.2
FvH4_4g02970 Fragaria vesca HOM05D002224 ORTHO05D002446 5.7e-16 87.0 59 76.3
FAN12G0222 Fragaria x ananassa HOM05D002224 ORTHO05D002446 5.7e-16 87.0 59 76.3
FAN17G0240 Fragaria x ananassa HOM05D002224 ORTHO05D002446 5.7e-16 87.0 59 76.3
RcHm_v2.0_Chr4g0391041 Rosa chinensis HOM05D002224 ORTHO05D002446 5.7e-16 87.0 59 76.3
arahy.Tifrunner.gnm1.ann1.P060ZG Arachis hypogaea HOM05D002224 ORTHO05D002446 7.5e-16 86.7 59 74.6
arahy.Tifrunner.gnm1.ann1.V2K6XN Arachis hypogaea HOM05D002224 ORTHO05D002446 7.5e-16 86.7 59 74.6
Glyma.20G086700 Glycine max HOM05D002224 ORTHO05D002446 7.5e-16 86.7 59 74.6
MD13G1209100 Malus domestica HOM05D002224 ORTHO05D002446 9.8e-16 86.3 59 76.3
TAR633G1794 Trochodendron aralioides HOM05D002224 ORTHO05D002446 9.8e-16 86.3 59 74.6
PSO832G3587 Papaver somniferum HOM05D002224 ORTHO05D002446 1.3e-15 85.9 62 69.4
Psat6g107120 Pisum sativum HOM05D002224 ORTHO05D002446 1.3e-15 85.9 59 74.6
vmacro15416 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 1.3e-15 85.9 60 71.7
CANSAT78G0691 Cannabis sativa HOM05D002224 ORTHO05D002446 1.7e-15 85.5 59 78.0
Duzib052G0858 Durio zibethinus HOM05D002224 ORTHO05D002446 1.7e-15 85.5 59 76.3
ECA240G1645 Erigeron canadensis HOM05D002224 ORTHO05D002446 1.7e-15 85.5 59 74.6
MD16G1211000 Malus domestica HOM05D002224 ORTHO05D002446 1.7e-15 85.5 59 76.3
TWI09G1092 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 1.7e-15 85.5 59 72.9
MSTRG.24697 Avicennia marina HOM05D002224 ORTHO05D002446 2.2e-15 85.1 59 72.9
Peaxi162Scf00024g00053 Petunia axillaris HOM05D002224 ORTHO05D002446 2.2e-15 85.1 59 71.2
SalBow3G3388 Salvia bowleyana HOM05D002224 ORTHO05D002446 2.2e-15 85.1 56 75.0
TPR.G739 Trifolium pratense HOM05D002224 ORTHO05D002446 2.2e-15 85.1 59 74.6
MSTRG.21894 Avicennia marina HOM05D002224 ORTHO05D002446 2.8e-15 84.7 62 69.4
Duzib052G0795 Durio zibethinus HOM05D002224 ORTHO05D002446 2.8e-15 84.7 57 77.2
DCAR_027286 Daucus carota HOM05D002224 ORTHO05D002446 3.7e-15 84.3 60 75.0
Nitab4.5_0003331g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 4.9e-15 84.0 58 72.4
TAR365G0712 Trochodendron aralioides HOM05D002224 ORTHO05D002446 6.3e-15 83.6 60 75.0
VMungo0720G0464 Vigna mungo HOM05D002224 ORTHO05D002446 8.3e-15 83.2 59 72.9
Ca_11949_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 1.1e-14 82.8 59 71.2
Ca_30398_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 1.1e-14 82.8 59 71.2
Hund04557 Selenicereus undatus HOM05D002224 ORTHO05D002446 1.8e-14 82.0 59 71.2
Nitab4.5_0000436g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 2.4e-14 81.6 58 70.7
Sc13g0005120 Simmondsia chinensis HOM05D002224 ORTHO05D002446 2.4e-14 81.6 59 72.9
Sc25g0004120 Simmondsia chinensis HOM05D002224 ORTHO05D002446 2.4e-14 81.6 56 78.6
Oeu002596.1 Olea europaea HOM05D002224 ORTHO05D002446 3.1e-14 81.3 60 70.0
Rhsim02G0034400 Rhododendron simsii HOM05D002224 ORTHO05D002446 3.1e-14 81.3 60 68.3
VMungo0720G3056 Vigna mungo HOM05D002224 ORTHO05D002446 3.1e-14 81.3 59 71.2
Aqoxy5G00291 Aquilegia oxysepala HOM05D002224 ORTHO05D002446 4.1e-14 80.9 59 67.8
SalBow2G1285 Salvia bowleyana HOM05D002224 ORTHO05D002446 9.2e-14 79.7 62 66.1
SGA_v2.0_scaffold79G25653 Striga asiatica HOM05D002224 ORTHO05D002446 9.2e-14 79.7 60 68.3
HanXRQChr13g0424301 Helianthus annuus HOM05D002224 ORTHO05D002446 1.2e-13 79.3 59 69.5
SGA_v2.0_scaffold308G48105 Striga asiatica HOM05D002224 ORTHO05D002446 1.2e-13 79.3 59 69.5
Migut.G00445 Erythranthe guttata HOM05D002224 ORTHO05D002446 2.7e-13 78.2 59 69.5
Phvul.007G271500 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 2.7e-13 78.2 59 64.4
MBI11_g40184_MAGBIO Magnolia biondii HOM05D002224 ORTHO05D002446 3.5e-13 77.8 61 65.6
Gohir.A01G024400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 4.5e-13 77.4 63 66.7
Peaxi162Scf00019g00284 Petunia axillaris HOM05D002224 ORTHO05D002446 1.0e-12 76.3 60 68.3
TWI73G0813 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 1.3e-12 75.9 58 69.0
Ah.07g207460 Amaranthus hybridus HOM05D002224 ORTHO05D002446 2.3e-12 75.1 59 67.8
CARHR003630 Cardamine hirsuta HOM05D002224 ORTHO05D002446 2.3e-12 75.1 59 61.0
AUR62002254 Chenopodium quinoa HOM05D002224 ORTHO05D002446 2.3e-12 75.1 59 67.8
Gohir.A02G036400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 2.3e-12 75.1 59 62.7
Gorai.005G047400 Gossypium raimondii HOM05D002224 ORTHO05D002446 2.3e-12 75.1 59 64.4
Medtr1g044450 Medicago truncatula HOM05D002224 ORTHO05D002446 2.3e-12 75.1 59 66.1
Sp2g08380 Schrenkiella parvula HOM05D002224 ORTHO05D002446 2.3e-12 75.1 59 66.1
Gohir.D01G022400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 2.9e-12 74.7 63 65.1
Gorai.002G024900 Gossypium raimondii HOM05D002224 ORTHO05D002446 2.9e-12 74.7 63 65.1
TAR362G0167 Trochodendron aralioides HOM05D002224 ORTHO05D002446 2.9e-12 74.7 59 66.1
Aa31LG5G3630 Aethionema arabicum HOM05D002224 ORTHO05D002446 3.9e-12 74.3 59 64.4
Gohir.A09G223700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.9e-12 74.3 59 67.8
Gohir.D09G225700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.9e-12 74.3 59 67.8
Gorai.006G247200 Gossypium raimondii HOM05D002224 ORTHO05D002446 3.9e-12 74.3 59 67.8
AT5G43560 Arabidopsis thaliana HOM05D002224 ORTHO05D002446 5.0e-12 73.9 59 62.7
CARHR180040 Cardamine hirsuta HOM05D002224 ORTHO05D002446 5.0e-12 73.9 60 65.0
TWI53G1239 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 5.0e-12 73.9 59 64.4
TWI53G1395 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 5.0e-12 73.9 59 64.4
Sp1g03110 Schrenkiella parvula HOM05D002224 ORTHO05D002446 6.6e-12 73.6 59 67.8
TPR.G26447 Trifolium pratense HOM05D002224 ORTHO05D002446 8.6e-12 73.2 58 67.2
Actinidia04471 Actinidia chinensis HOM05D002224 ORTHO05D002446 1.1e-11 72.8 60 61.7
AUR62015466 Chenopodium quinoa HOM05D002224 ORTHO05D002446 1.5e-11 72.4 59 66.1
Psat6g132600 Pisum sativum HOM05D002224 ORTHO05D002446 1.5e-11 72.4 58 69.0
Oeu058878.1 Olea europaea HOM05D002224 ORTHO05D002446 1.9e-11 72.0 58 60.3
Hund11858 Selenicereus undatus HOM05D002224 ORTHO05D002446 2.5e-11 71.6 59 59.3
AL8G16740 Arabidopsis lyrata HOM05D002224 ORTHO05D002446 4.3e-11 70.9 59 59.3
Psat6g140440 Pisum sativum HOM05D002224 ORTHO05D002446 5.6e-11 70.5 58 67.2
EL10Ac3g05897 Beta vulgaris HOM05D002224 ORTHO05D002446 9.5e-11 69.7 59 62.7
unitig_748.g7317 Utricularia gibba HOM05D002224 ORTHO05D002446 9.5e-11 69.7 61 60.7
AT1G04300 Arabidopsis thaliana HOM05D002224 ORTHO05D002446 1.2e-10 69.3 59 64.4
unitig_748.g8318 Utricularia gibba HOM05D002224 ORTHO05D002446 2.1e-10 68.6 60 63.3
BcaC07g42175 Brassica carinata HOM05D002224 ORTHO05D002446 3.6e-10 67.8 59 59.3
A09p67930 Brassica napus HOM05D002224 ORTHO05D002446 3.6e-10 67.8 59 59.3
C08p52350 Brassica napus HOM05D002224 ORTHO05D002446 3.6e-10 67.8 59 59.3
BolC8t52764H Brassica oleracea HOM05D002224 ORTHO05D002446 3.6e-10 67.8 59 59.3
PGR004G2419 Punica granatum HOM05D002224 ORTHO05D002446 6.1e-10 67.0 59 62.7
SHI00618 Sapria himalayana HOM05D002224 ORTHO05D002446 6.1e-10 67.0 57 59.6
HPP92_010253 Vanilla planifolia HOM05D002224 ORTHO05D002446 6.1e-10 67.0 58 60.3
Sed0000078 Sechium edule HOM05D002224 ORTHO05D002446 8.0e-10 66.6 58 62.1
BraA09t42128Z Brassica rapa HOM05D002224 ORTHO05D002446 1.0e-09 66.2 59 57.6
ClCG05G004530 Citrullus lanatus HOM05D002224 ORTHO05D002446 1.0e-09 66.2 56 62.5
MELO3C006460.2 Cucumis melo HOM05D002224 ORTHO05D002446 1.0e-09 66.2 56 62.5
CsaV3_3G012500 Cucumis sativus L. HOM05D002224 ORTHO05D002446 1.0e-09 66.2 56 62.5
Thhalv10003141m.g Eutrema salsugineum HOM05D002224 ORTHO05D002446 1.0e-09 66.2 59 57.6
Hma1.2p1_0650F.1_g195580 Hydrangea macrophylla HOM05D002224 ORTHO05D002446 1.0e-09 66.2 50 70.0
Lsat_1_v5_gn_5_73041 Lactuca sativa HOM05D002224 ORTHO05D002446 1.0e-09 66.2 55 69.1
Lalb_Chr02g0150601 Lupinus albus HOM05D002224 ORTHO05D002446 1.0e-09 66.2 59 66.1
Carub.0001s0349 Capsella rubella HOM05D002224 ORTHO05D002446 1.4e-09 65.9 60 61.7
Eucgr.H03150 Eucalyptus grandis HOM05D002224 ORTHO05D002446 2.3e-09 65.1 55 65.5
THA.LOC104801093 Tarenaya hassleriana HOM05D002224 ORTHO05D002446 3.1e-09 64.7 59 57.6
Medtr1g073790 Medicago truncatula HOM05D002224 ORTHO05D002446 5.2e-09 63.9 58 60.3
Sed0005071 Sechium edule HOM05D002224 ORTHO05D002446 5.2e-09 63.9 57 61.4
THA.LOC104815986 Tarenaya hassleriana HOM05D002224 ORTHO05D002446 4.4e-08 60.8 59 55.9
CDE07G1877 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 5.8e-08 60.5 32 71.9
CDE04G0749 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 7.5e-08 60.1 59 50.8
AL1G13900 Arabidopsis lyrata HOM05D002224 ORTHO05D002446 9.8e-08 59.7 52 61.5
Nn3g19583 Nelumbo nucifera HOM05D002224 ORTHO05D002446 9.8e-08 59.7 28 85.7
BcaC07g42194 Brassica carinata HOM05D002224 ORTHO05D002446 1.3e-07 59.3 55 56.4
CDE07G0985 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 1.3e-07 59.3 59 50.8
Zm00001eb151690 Zea mays HOM05D002224 ORTHO05D002446 2.2e-07 58.5 33 72.7
Aqoxy2G03594 Aquilegia oxysepala HOM05D002224 ORTHO05D002446 2.9e-07 58.2 30 83.3
BcaC07g36918 Brassica carinata HOM05D002224 ORTHO05D002446 2.9e-07 58.2 60 51.7
A08p37000 Brassica napus HOM05D002224 ORTHO05D002446 2.9e-07 58.2 60 51.7
C08p01010 Brassica napus HOM05D002224 ORTHO05D002446 2.9e-07 58.2 60 51.7
BraA08t35600Z Brassica rapa HOM05D002224 ORTHO05D002446 2.9e-07 58.2 60 51.7
HPP92_015885 Vanilla planifolia HOM05D002224 ORTHO05D002446 4.9e-07 57.4 58 55.2
ECA233G3249 Erigeron canadensis HOM05D002224 ORTHO05D002446 6.4e-07 57.0 34 76.5
Zm00001eb030950 Zea mays HOM05D002224 ORTHO05D002446 1.1e-06 56.2 63 57.1
BolC8t46901H Brassica oleracea HOM05D002224 ORTHO05D002446 1.9e-06 55.5 60 50.0
ATR0665G342 Amborella trichopoda HOM05D002224 ORTHO05D002446 3.2e-06 54.7 59 52.5
BcaC05g24454 Brassica carinata HOM05D002224 ORTHO05D002446 3.2e-06 54.7 59 52.5
C05p02490 Brassica napus HOM05D002224 ORTHO05D002446 3.2e-06 54.7 59 52.5
BolC5t29028H Brassica oleracea HOM05D002224 ORTHO05D002446 3.2e-06 54.7 59 52.5
Os05g0508700 Oryza sativa ssp. japonica HOM05D002224 ORTHO05D002446 4.1e-06 54.3 38 63.2
C07p26200 Brassica napus HOM05D002224 ORTHO05D002446 7.0e-06 53.5 56 55.4
PGSC0003DMG402016322 Solanum tuberosum HOM05D002224 ORTHO05D002446 7.0e-06 53.5 57 47.4
BcaC06g31689 Brassica carinata HOM05D002224 ORTHO05D002446 9.2e-06 53.1 51 54.9


User provided reference genes

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