Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 0.0e+00 1114.4 584 100.0
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.6e-213 745.7 584 68.2
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 9.4e-211 737.3 608 64.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 6.3e-207 724.5 594 65.8
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 5.9e-205 718.0 583 68.3
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.0e-204 717.2 595 66.6
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.9e-203 713.0 595 67.2
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.2e-203 711.8 586 65.2
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 7.2e-203 711.1 588 67.3
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 9.4e-203 710.7 596 65.1
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 7.9e-202 707.6 586 66.6
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.0e-201 707.2 588 68.2
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.5e-200 703.4 576 66.5
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.6e-200 702.6 603 64.0
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.4e-200 701.0 603 63.8
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 9.7e-200 700.7 577 66.6
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 2.8e-199 699.1 584 67.0
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 4.8e-199 698.4 610 63.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 8.2e-199 697.6 603 64.7
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 2.4e-198 696.0 603 64.8
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.3e-198 694.9 631 60.9
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 7.0e-198 694.5 598 61.5
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.2e-197 693.7 590 63.7
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.5e-197 693.3 601 63.9
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 5.9e-197 691.4 583 66.6
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.3e-196 690.3 590 64.7
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.3e-196 690.3 598 65.1
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.7e-196 689.9 623 61.2
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.2e-196 689.5 600 62.2
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 2.9e-196 689.1 590 66.1
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.5e-196 687.6 589 63.3
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-195 686.8 602 62.5
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.6e-194 683.3 597 65.7
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.1e-194 682.9 602 62.8
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.6e-194 682.2 573 63.5
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 6.1e-194 681.4 603 62.5
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.0e-193 680.6 591 64.1
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.0e-193 680.6 607 61.1
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.4e-193 680.2 610 62.0
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.2e-193 678.3 604 61.9
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 5.2e-193 678.3 581 65.2
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.1e-192 677.2 600 63.8
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.1e-192 677.2 607 61.8
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.5e-192 676.8 611 60.7
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 3.7e-191 672.2 594 64.8
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.8e-190 669.8 589 61.5
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 3.1e-190 669.1 596 60.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 5.3e-190 668.3 607 59.1
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.2e-189 667.2 623 61.2
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.6e-189 666.8 625 61.3
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.0e-189 666.4 614 59.0
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.6e-189 666.0 597 61.3
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 4.5e-189 665.2 571 62.3
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.3e-188 663.7 602 63.0
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.7e-188 663.3 626 58.6
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 2.2e-188 662.9 644 57.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.9e-188 662.5 470 72.3
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 2.9e-188 662.5 608 60.2
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 5.0e-188 661.8 590 61.9
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.9e-187 659.8 511 68.7
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.9e-187 659.8 597 60.5
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 9.4e-187 657.5 582 63.7
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.6e-186 656.8 597 61.3
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 4.7e-186 655.2 598 60.5
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 8.0e-186 654.4 608 59.7
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.0e-185 654.1 536 67.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.4e-185 653.7 597 60.3
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 8.8e-185 651.0 588 61.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.5e-184 650.2 592 59.0
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 5.7e-184 648.3 597 61.8
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.7e-184 647.5 589 62.5
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 9.7e-184 647.5 599 61.1
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 3.7e-183 645.6 605 61.2
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.4e-182 642.9 585 61.2
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 3.1e-182 642.5 598 61.4
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 4.1e-182 642.1 587 61.5
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 4.1e-182 642.1 613 58.6
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.2e-181 640.6 570 60.5
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.0e-181 639.8 589 58.2
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.7e-181 639.4 605 60.7
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 3.5e-181 639.0 595 57.6
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 4.5e-181 638.6 571 60.1
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 5.9e-181 638.3 571 60.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.7e-180 636.7 592 61.1
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 2.2e-180 636.3 581 60.4
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.2e-180 636.3 586 61.9
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 5.0e-180 635.2 602 61.5
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 6.5e-180 634.8 551 65.3
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.5e-180 634.4 585 59.3
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.5e-179 633.6 591 61.3
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 5.5e-179 631.7 572 60.5
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 7.2e-179 631.3 563 62.2
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.0e-178 627.9 596 59.9
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 1.0e-177 627.5 566 60.4
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 2.3e-177 626.3 533 62.9
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 6.8e-177 624.8 636 57.9
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 6.8e-177 624.8 606 61.1
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.6e-176 622.9 606 59.7
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 9.8e-176 620.9 594 59.1
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.7e-175 619.0 591 57.9
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 6.3e-175 618.2 597 56.4
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 8.3e-175 617.8 593 59.2
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.8e-174 616.7 576 57.3
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.4e-174 616.3 596 56.9
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 2.4e-174 616.3 578 57.4
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 4.1e-174 615.5 596 56.7
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 4.1e-174 615.5 578 58.5
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 4.1e-174 615.5 578 58.7
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 5.4e-174 615.1 586 58.4
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 7.0e-174 614.8 576 57.3
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 7.0e-174 614.8 597 56.8
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.1e-174 614.4 631 56.6
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.7e-173 612.8 602 56.5
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 2.9e-172 609.4 577 57.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 6.6e-172 608.2 544 60.5
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 9.5e-171 604.4 566 60.6
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 4.7e-170 602.1 587 56.4
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 6.1e-170 601.7 589 58.2
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.2e-168 597.4 585 59.8
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 9.8e-168 594.3 568 59.2
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.1e-166 590.9 571 58.8
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.6e-165 587.0 480 66.7
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 8.6e-164 581.3 546 59.3
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 2.5e-163 579.7 545 59.3
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 7.3e-163 578.2 554 58.5
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 1.2e-162 577.4 579 56.0
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.2e-162 577.4 634 52.2
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 3.6e-162 575.9 634 51.9
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 5.2e-161 572.0 469 67.0
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 9.8e-160 567.8 566 56.7
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 5.6e-155 552.0 585 54.2
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.4e-153 547.4 568 54.0
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 8.3e-151 538.1 499 59.7
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 2.1e-149 533.5 592 52.7
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 5.2e-145 518.8 577 52.0
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.4e-142 510.0 607 50.4
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 7.1e-142 508.4 555 53.5
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.2e-138 497.7 428 61.2
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 6.0e-133 478.8 562 48.6
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.0e-132 476.5 386 68.7
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.3e-124 451.1 569 48.5
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.8e-122 443.4 439 55.6
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 6.0e-117 425.6 391 61.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.1e-115 421.4 338 65.1
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.4e-97 360.5 315 62.9
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.4e-96 356.7 338 58.6
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 4.5e-96 356.3 631 35.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 2.0e-88 330.9 363 53.7
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 9.8e-67 258.8 163 81.6
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 2.3e-60 237.7 245 54.7
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 9.1e-57 225.7 271 52.4
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 6.8e-52 209.5 224 57.6
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 4.4e-43 180.3 138 70.3
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 4.9e-34 150.2 372 32.3
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 1.6e-32 145.2 446 26.2
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 3.5e-32 144.1 539 24.7
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.8e-28 131.7 169 49.7
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 9.9e-19 99.4 104 51.9
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.4e-17 95.5 81 58.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 3.2e-17 94.4 66 75.8
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 1.3e-15 89.0 82 57.3
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.7e-15 88.6 73 60.3
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 5.1e-15 87.0 64 56.2
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.6e-13 82.0 71 59.2
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.2e-13 80.1 196 31.1
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.4e-12 78.2 62 62.9
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 9.0e-12 76.3 100 45.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.2e-11 75.9 103 43.7
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.0e-07 62.8 35 82.9
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 1.3e-07 62.4 250 25.6
Ca_06859_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 5.1e-07 60.5 223 26.9
unitig_899.g15441 Utricularia gibba HOM05D001818 ORTHO05D001780 8.7e-07 59.7 253 30.0
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.1e-06 59.3 312 26.9
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.9e-06 58.5 35 77.1
Oeu010133.1 Olea europaea HOM05D010114 ORTHO05D000601 4.3e-06 57.4 64 48.4
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 7.4e-06 56.6 36 75.0


User provided reference genes

Program Settings