Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 4.6e-146 521.2 255 100.0
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 6.2e-127 457.6 255 87.1
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 87.5
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 86.7
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 9.0e-126 453.8 255 86.3
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 86.3
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 2.6e-125 452.2 255 86.7
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 2.6e-125 452.2 255 86.3
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.5
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.5e-125 451.4 252 86.5
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 86.3
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 7.6e-125 450.7 256 85.5
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 7.6e-125 450.7 257 85.6
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.0e-124 450.3 255 85.1
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 85.5
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.3e-124 449.9 254 85.4
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 84.7
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 85.5
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 85.5
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 86.3
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 84.7
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 3.8e-124 448.4 255 85.9
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 4.9e-124 448.0 255 84.7
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.9e-124 448.0 256 85.5
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 4.9e-124 448.0 255 84.7
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 6.5e-124 447.6 255 85.9
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.4e-124 447.2 255 84.7
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 8.4e-124 447.2 255 85.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.4e-123 446.4 255 85.1
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.4e-123 446.4 252 84.9
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.4e-123 446.4 255 85.9
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-123 446.0 255 84.3
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.9e-123 446.0 256 84.4
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 85.9
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 85.1
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 86.3
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 85.1
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 4.2e-123 444.9 256 84.8
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 4.2e-123 444.9 254 85.8
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 5.5e-123 444.5 255 84.7
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 9.3e-123 443.7 255 86.3
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.3e-123 443.7 255 83.5
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.2e-122 443.4 255 84.3
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.1e-122 442.6 254 85.0
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 2.7e-122 442.2 256 85.2
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 2.7e-122 442.2 255 84.3
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.7e-122 442.2 255 83.5
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.7e-122 442.2 255 83.9
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 4.6e-122 441.4 255 84.3
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 4.6e-122 441.4 253 85.0
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 7.9e-122 440.7 255 83.5
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 1.0e-121 440.3 256 84.8
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.0e-121 440.3 255 85.1
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.8e-121 439.5 256 84.4
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 3.0e-121 438.7 255 84.7
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 3.0e-121 438.7 253 84.2
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 84.7
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 83.9
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 85.5
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 84.7
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 3.9e-121 438.3 255 83.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 3.9e-121 438.3 256 83.2
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 5.1e-121 438.0 255 84.7
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 6.7e-121 437.6 256 84.0
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 6.7e-121 437.6 256 82.8
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 6.7e-121 437.6 255 83.5
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.1e-120 436.8 253 84.6
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.1e-120 436.8 255 84.3
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.5e-120 436.4 256 83.6
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.9e-120 436.0 256 84.0
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.9e-120 436.0 256 84.0
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.9e-120 436.0 255 83.9
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.9e-120 436.0 256 84.0
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 4.3e-120 434.9 255 81.6
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.7e-120 434.5 262 83.6
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.7e-120 434.5 255 82.7
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 7.4e-120 434.1 253 84.2
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 7.4e-120 434.1 253 84.2
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 7.4e-120 434.1 255 82.7
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 9.7e-120 433.7 255 82.7
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 9.7e-120 433.7 255 82.7
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-119 433.3 253 84.2
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.6e-119 433.0 253 84.2
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 1.6e-119 433.0 255 82.7
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.3e-119 431.0 255 82.0
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.4e-118 429.9 255 81.6
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.8e-118 429.5 255 83.5
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.8e-118 429.5 255 83.1
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.8e-118 429.5 255 82.7
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.8e-118 429.5 252 81.7
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.8e-118 429.5 252 82.9
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 2.4e-118 429.1 256 82.4
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 6.9e-118 427.6 253 83.4
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 6.9e-118 427.6 255 81.2
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 9.0e-118 427.2 253 83.4
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 9.0e-118 427.2 257 80.9
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 9.0e-118 427.2 255 80.4
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.2e-117 426.8 252 83.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.2e-117 426.8 252 83.7
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.0e-117 426.0 255 81.2
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.0e-116 423.7 255 80.4
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.0e-116 423.7 306 70.6
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 8.5e-116 420.6 255 80.0
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.1e-115 420.2 257 80.2
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 2.1e-114 416.0 255 81.2
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 2.1e-114 416.0 283 74.2
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 4.6e-114 414.8 243 81.5
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.7e-113 411.0 240 85.4
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 8.8e-113 410.6 255 79.6
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.7e-111 406.4 250 76.4
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.1e-110 403.7 294 71.4
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 4.1e-110 401.7 240 82.5
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 3.4e-109 398.7 233 79.4
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 3.6e-106 388.7 219 85.4
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 2.3e-105 386.0 267 73.0
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 9.7e-104 380.6 230 77.8
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.4e-102 376.7 229 77.7
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 1.4e-102 376.7 255 76.1
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.4e-102 376.7 232 75.0
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.2e-101 373.6 232 75.9
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.2e-101 373.6 232 76.3
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.5e-101 373.2 253 71.1
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 1.3e-100 370.2 259 72.2
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.4e-97 360.1 200 84.5
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.4e-97 360.1 232 75.9
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.1e-96 357.1 232 76.3
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.3e-95 353.6 319 59.9
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.8e-95 352.4 255 70.6
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 1.4e-94 350.1 240 70.8
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.3e-92 343.6 240 69.6
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.8e-92 342.0 240 75.0
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.9e-83 313.2 161 92.5
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 5.5e-83 311.6 249 65.9
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 2.6e-80 302.8 162 88.3
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 1.4e-78 297.0 160 88.8
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 5.4e-78 295.0 248 58.1
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.3e-76 290.4 285 59.3
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.1e-75 287.3 173 83.8
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 1.2e-74 283.9 201 71.6
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.0e-73 278.9 156 87.2
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 5.2e-73 278.5 162 85.2
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 5.4e-70 268.5 232 52.6
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.0e-61 240.0 268 53.4
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.1e-57 227.6 122 88.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 5.2e-57 225.3 116 94.8
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 7.5e-56 221.5 135 79.3
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.5e-51 206.5 223 43.9
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 4.0e-49 199.1 107 91.6
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 3.9e-44 182.6 165 61.2
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 5.1e-44 182.2 211 46.9
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 5.1e-44 182.2 121 75.2
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.3e-43 178.3 100 87.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.5e-35 154.1 84 83.3
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.9e-35 153.7 83 83.1
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.3e-35 152.5 84 84.5
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 4.3e-35 152.5 100 75.0
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.6e-34 150.6 83 84.3
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.0e-33 144.8 84 81.0
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.0e-32 143.7 84 79.8
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.7e-31 140.6 77 83.1
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.9e-31 139.8 84 78.6
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 5.4e-30 135.6 94 72.3
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.1e-29 133.7 76 82.9
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.5e-29 132.9 76 82.9
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 6.0e-29 132.1 84 78.6
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-28 128.3 70 84.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-28 128.3 70 84.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-28 128.3 70 84.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 8.7e-28 128.3 70 84.3
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.5e-27 127.5 76 78.9
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.3e-27 126.3 70 82.9
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.1e-25 121.3 70 80.0
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 3.1e-25 119.8 84 75.0
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.0e-25 118.2 71 78.9
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.0e-24 117.1 76 75.0
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 8.7e-12 75.1 41 85.4
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 2.6e-08 63.5 55 60.0
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 1.4e-06 57.8 30 90.0


User provided reference genes

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