Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 1.2e-252 875.9 427 100.0
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 2.7e-122 443.0 467 53.5
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 2.2e-100 370.2 436 48.2
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.0e-97 359.8 434 46.5
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 7.6e-93 345.1 433 46.4
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.4e-91 340.1 456 43.9
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 4.2e-91 339.3 432 46.1
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.8e-87 326.6 430 41.4
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 8.4e-84 315.1 404 45.5
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.9e-83 313.9 433 44.1
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 1.3e-81 307.8 422 40.0
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 2.3e-81 307.0 437 41.4
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 8.7e-81 305.1 467 38.5
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 2.5e-80 303.5 420 42.4
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 2.5e-80 303.5 420 42.4
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 4.8e-79 299.3 424 41.5
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 4.8e-79 299.3 427 41.0
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 8.1e-79 298.5 430 41.9
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.4e-78 297.0 424 41.5
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 3.4e-77 293.1 434 40.8
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.7e-76 290.8 295 48.5
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.8e-76 289.7 295 51.2
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 4.9e-76 289.3 293 48.8
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 4.9e-76 289.3 300 49.7
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 6.4e-76 288.9 309 48.5
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 8.4e-76 288.5 367 42.0
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.9e-75 287.3 443 40.2
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 2.4e-75 287.0 297 46.8
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 1.2e-74 284.6 422 40.3
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 1.2e-74 284.6 432 40.5
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 2.1e-74 283.9 405 40.2
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 4.6e-74 282.7 438 40.2
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 1.8e-73 280.8 293 48.1
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.3e-73 280.4 409 41.1
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.1e-73 279.3 425 40.0
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 6.7e-73 278.9 295 48.5
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 6.7e-73 278.9 345 44.9
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.5e-72 276.9 409 40.8
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 4.3e-72 276.2 436 39.0
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 5.6e-72 275.8 340 42.6
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.1e-71 273.9 440 38.6
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 4.8e-71 272.7 431 39.9
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.2e-71 272.3 387 41.3
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.4e-70 270.4 409 40.1
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 2.4e-70 270.4 426 38.0
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.1e-70 270.0 457 37.9
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 6.9e-70 268.9 420 38.1
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 2.6e-69 266.9 438 38.6
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 7.6e-69 265.4 400 38.8
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 7.6e-69 265.4 436 37.8
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 7.6e-69 265.4 311 45.3
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 1.0e-68 265.0 300 46.0
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 1.7e-68 264.2 422 36.3
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.9e-68 263.5 442 37.6
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 6.4e-68 262.3 300 45.7
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 6.4e-68 262.3 438 37.7
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 1.1e-67 261.5 294 45.6
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 2.5e-67 260.4 449 37.4
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 2.5e-67 260.4 294 46.6
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 2.5e-67 260.4 434 38.2
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 9.3e-67 258.5 424 36.8
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 1.6e-66 257.7 294 44.9
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 2.1e-66 257.3 418 36.6
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 2.7e-66 256.9 425 38.6
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 4.6e-66 256.1 292 44.2
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 7.9e-66 255.4 426 37.8
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 1.8e-65 254.2 289 44.3
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.3e-65 253.8 292 43.8
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.3e-65 253.8 436 36.7
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 3.0e-65 253.4 282 44.3
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 3.9e-65 253.1 394 39.6
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 8.7e-65 251.9 275 44.0
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 2.5e-64 250.4 420 37.1
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 6.2e-63 245.7 299 44.8
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 8.2e-63 245.4 287 45.3
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.4e-62 244.6 290 42.8
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 4.0e-62 243.0 439 36.4
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 5.3e-62 242.7 419 35.8
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 3.4e-61 240.0 409 37.9
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.5e-61 239.6 295 43.4
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 7.6e-61 238.8 448 35.7
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.0e-60 238.4 409 37.7
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 1.3e-60 238.0 433 37.2
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.2e-60 237.3 445 38.0
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 1.4e-59 234.6 297 45.5
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.9e-59 234.2 339 42.8
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 4.2e-59 233.0 295 43.7
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 2.3e-57 227.3 399 36.3
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 2.3e-57 227.3 363 37.2
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 5.1e-57 226.1 287 43.2
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 7.4e-56 222.2 288 41.3
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 9.0e-54 215.3 397 36.8
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.2e-53 214.9 323 38.1
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 3.4e-53 213.4 253 45.1
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 5.5e-51 206.1 292 38.7
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 1.2e-50 204.9 413 35.4
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 1.6e-50 204.5 347 36.9
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.4e-49 201.4 308 39.6
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.3e-49 200.7 291 36.1
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 3.0e-49 200.3 273 41.4
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 5.1e-49 199.5 373 34.6
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.5e-48 198.0 298 40.3
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 7.4e-48 195.7 303 39.3
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 1.8e-46 191.0 429 32.9
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.4e-46 190.7 356 35.1
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 3.1e-46 190.3 312 37.2
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 5.3e-46 189.5 244 38.9
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.2e-45 188.3 216 43.1
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.6e-45 187.2 305 35.7
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 8.5e-44 182.2 209 44.5
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 4.2e-43 179.9 337 35.6
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 3.6e-42 176.8 300 35.3
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 3.0e-41 173.7 213 44.1
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 3.0e-41 173.7 213 44.1
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 6.7e-41 172.6 302 36.1
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 6.7e-41 172.6 291 34.4
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 5.7e-40 169.5 216 41.7
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 7.4e-40 169.1 216 41.7
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 7.4e-40 169.1 266 37.6
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.3e-39 168.3 209 42.6
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.2e-39 167.5 213 41.8
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 2.8e-39 167.2 210 42.9
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 2.8e-39 167.2 223 40.8
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 2.8e-39 167.2 223 40.8
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 2.8e-39 167.2 431 30.4
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 6.3e-39 166.0 223 40.4
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 6.3e-39 166.0 123 59.3
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 8.2e-39 165.6 211 41.7
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 1.7e-36 157.9 220 38.2
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 4.2e-35 153.3 167 46.1
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 2.1e-34 151.0 231 38.5
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 1.1e-30 138.7 273 33.3
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.6e-29 134.0 276 31.9
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.5e-29 133.7 263 34.6
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 2.5e-27 127.5 88 63.6
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 3.0e-25 120.6 278 33.8
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 8.8e-25 119.0 223 33.6
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 1.7e-23 114.8 349 28.9
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 2.2e-23 114.4 72 65.3
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 3.7e-23 113.6 332 27.1
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 1.3e-20 105.1 180 35.0
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 6.5e-20 102.8 160 37.5
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 9.4e-19 99.0 167 32.9
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.6e-18 98.2 167 32.9
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 1.8e-17 94.7 127 43.3
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 5.2e-17 93.2 133 42.1
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 1.5e-16 91.7 61 57.4
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.0e-16 91.3 171 33.9
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.2e-15 87.8 60 61.7
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 7.0e-14 82.8 166 32.5
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 9.1e-14 82.4 129 34.1
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 2.3e-12 77.8 278 26.6
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 7.5e-08 62.8 88 38.6
GSVIVG01008795001 Vitis vinifera HOM05D004258 ORTHO05D005163 2.9e-07 60.8 96 33.3
vmacro05816 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 3.7e-07 60.5 98 29.6
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 4.9e-07 60.1 153 25.5
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 8.3e-07 59.3 65 43.1
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 1.1e-06 58.9 52 50.0
CSS0027613 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 1.4e-06 58.5 98 27.6
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 1.4e-06 58.5 156 28.8
Peaxi162Scf00066g00717 Petunia axillaris HOM05D004258 ORTHO05D005163 1.4e-06 58.5 155 27.1
QL09p007788 Quercus lobata HOM05D002415 ORTHO05D002522 1.4e-06 58.5 64 35.9
Cpa.g.sc64.156 Carica papaya HOM05D004258 ORTHO05D005163 1.8e-06 58.2 50 44.0
FAN25G1943 Fragaria x ananassa HOM05D000104 ORTHO05D006385 1.8e-06 58.2 150 27.3
A07p42810 Brassica napus HOM05D004258 ORTHO05D005163 3.2e-06 57.4 131 31.3
CiPaw.15G030100 Carya illinoinensis HOM05D004258 ORTHO05D005163 3.2e-06 57.4 50 46.0
CiPaw.15G030500 Carya illinoinensis HOM05D004258 ORTHO05D005163 3.2e-06 57.4 50 46.0
Dinv35053 Davidia involucrata HOM05D003353 ORTHO05D003751 3.2e-06 57.4 98 27.6
Lj1g0024592 Lotus japonicus HOM05D004258 ORTHO05D005163 3.2e-06 57.4 50 46.0
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 3.2e-06 57.4 102 29.4
PSO675G4589 Papaver somniferum HOM05D007740 ORTHO05D009757 3.2e-06 57.4 50 40.0
Duzib116G0801 Durio zibethinus HOM05D004258 ORTHO05D005163 4.1e-06 57.0 51 47.1
Cpa.g.sc215.4 Carica papaya HOM05D003353 ORTHO05D003751 5.4e-06 56.6 104 29.8
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 5.4e-06 56.6 145 26.2
SHI09239 Sapria himalayana HOM05D004258 ORTHO05D005163 5.4e-06 56.6 52 40.4
TAR628G1383 Trochodendron aralioides HOM05D004258 ORTHO05D005163 5.4e-06 56.6 50 46.0
Lalb_Chr04g0253581 Lupinus albus HOM05D004258 ORTHO05D005163 7.0e-06 56.2 50 44.0
Cc10_g13570 Coffea canephora HOM05D004258 ORTHO05D005163 9.2e-06 55.8 50 46.0
Thhalv10004504m.g Eutrema salsugineum HOM05D002415 ORTHO05D002522 9.2e-06 55.8 72 34.7
FvH4_3g12610 Fragaria vesca HOM05D000104 ORTHO05D006385 9.2e-06 55.8 150 26.0
Manes.18G083535 Manihot esculenta HOM05D004258 ORTHO05D005163 9.2e-06 55.8 81 35.8
QL09p031581 Quercus lobata HOM05D004258 ORTHO05D005163 9.2e-06 55.8 50 44.0
QL09p032109 Quercus lobata HOM05D004258 ORTHO05D005163 9.2e-06 55.8 50 44.0
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 9.2e-06 55.8 100 28.0
Rhsim11G0072600 Rhododendron simsii HOM05D004258 ORTHO05D005163 9.2e-06 55.8 52 46.2
THA.LOC104803335 Tarenaya hassleriana HOM05D002415 ORTHO05D002522 9.2e-06 55.8 53 43.4


User provided reference genes

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